HEADER VIRAL PROTEIN,METAL BINDING PROTEIN 30-JUN-05 2A51 TITLE STRUCTURE OF THE (13-51) DOMAIN OF THE NUCLEOCAPSID PROTEIN TITLE 2 NCP8 FROM SIVLHOEST COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN; COMPND 5 SYNONYM: NUCLEOCAPSID PROTEIN NCP8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN SOURCE 4 SIV(SIMIAN IMMUNODEFICIENCY VIRUS) KEYWDS SIVLHOEST, NMR STRUCTURE, NCP8, NUCLEOCAPSID, VIRAL PROTEIN, KEYWDS 2 METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.MORELLET,H.MEUDAL,S.BOUAZIZ,B.P.ROQUES REVDAT 2 24-FEB-09 2A51 1 VERSN REVDAT 1 20-JUN-06 2A51 0 JRNL AUTH N.MORELLET,H.MEUDAL,S.BOUAZIZ,B.P.ROQUES JRNL TITL STRUCTURE OF THE ZINC FINGER DOMAIN ENCOMPASSING JRNL TITL 2 RESIDUES 13-51 OF THE NUCLEOCAPSID PROTEIN FROM JRNL TITL 3 SIMIAN IMMUNODEFICIENCY VIRUS JRNL REF BIOCHEM.J. V. 393 725 2006 JRNL REFN ISSN 0264-6021 JRNL PMID 16229684 JRNL DOI 10.1042/BJ20051203 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 98 REMARK 3 AUTHORS : ACCELRYS REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 474 NOE-DERIVED DISTANCE CONSTRAINTS REMARK 4 REMARK 4 2A51 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB033496. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM (13-51)NCP7 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 4 31.21 -88.68 REMARK 500 1 ASN A 5 -71.47 -139.52 REMARK 500 2 ASN A 5 -62.66 -100.94 REMARK 500 4 ASN A 5 -73.75 -137.20 REMARK 500 5 PHE A 4 31.78 -92.27 REMARK 500 5 ASN A 5 -71.35 -140.11 REMARK 500 6 ASN A 5 -67.62 -135.35 REMARK 500 7 PHE A 4 36.82 -93.45 REMARK 500 7 ASN A 5 -73.85 -142.92 REMARK 500 8 PHE A 4 33.94 -94.64 REMARK 500 8 ASN A 5 -72.72 -144.74 REMARK 500 9 ASN A 5 -73.69 -97.01 REMARK 500 10 PHE A 4 37.24 -97.48 REMARK 500 10 ASN A 5 -70.91 -144.19 REMARK 500 11 PHE A 4 31.80 -89.90 REMARK 500 11 ASN A 5 -71.73 -139.06 REMARK 500 12 PHE A 4 38.82 -93.65 REMARK 500 12 ASN A 5 -70.38 -146.53 REMARK 500 13 PHE A 4 32.66 -90.61 REMARK 500 13 ASN A 5 -73.90 -140.31 REMARK 500 14 ASN A 5 -72.08 -135.04 REMARK 500 15 ASN A 5 -73.47 -128.28 REMARK 500 15 GLU A 22 -64.70 -90.51 REMARK 500 16 PHE A 4 35.45 -89.64 REMARK 500 16 ASN A 5 -66.23 -145.00 REMARK 500 17 PHE A 4 41.16 -104.44 REMARK 500 17 ASN A 5 -71.01 -146.00 REMARK 500 19 PHE A 4 35.95 -90.47 REMARK 500 19 ASN A 5 -73.09 -145.73 REMARK 500 19 PRO A 19 171.81 -58.00 REMARK 500 20 PHE A 4 30.09 -87.08 REMARK 500 20 ASN A 5 -74.53 -138.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 54H ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 3 SG REMARK 620 2 CYS A 6 SG 109.5 REMARK 620 3 HIS A 11 NE2 104.8 113.2 REMARK 620 4 CYS A 16 SG 107.9 111.3 109.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 55H ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 24 SG REMARK 620 2 CYS A 27 SG 112.6 REMARK 620 3 HIS A 32 NE2 107.3 109.7 REMARK 620 4 CYS A 37 SG 105.6 113.4 107.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 54H REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 55H DBREF 2A51 A 1 39 PDB 2A51 2A51 1 39 SEQRES 1 A 39 LEU THR CYS PHE ASN CYS GLY LYS PRO GLY HIS THR ALA SEQRES 2 A 39 ARG MET CYS ARG GLN PRO ARG GLN GLU GLY CYS TRP ASN SEQRES 3 A 39 CYS GLY SER LYS GLU HIS ARG PHE ALA GLN CYS PRO LYS HET ZN A 54H 1 HET ZN A 55H 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) LINK ZN ZN A 54H SG CYS A 3 1555 1555 2.22 LINK ZN ZN A 54H SG CYS A 6 1555 1555 2.25 LINK ZN ZN A 54H NE2 HIS A 11 1555 1555 2.06 LINK ZN ZN A 54H SG CYS A 16 1555 1555 2.23 LINK ZN ZN A 55H SG CYS A 24 1555 1555 2.28 LINK ZN ZN A 55H SG CYS A 27 1555 1555 2.21 LINK ZN ZN A 55H NE2 HIS A 32 1555 1555 2.00 LINK ZN ZN A 55H SG CYS A 37 1555 1555 2.19 SITE 1 AC1 5 CYS A 3 CYS A 6 HIS A 11 CYS A 16 SITE 2 AC1 5 GLN A 18 SITE 1 AC2 4 CYS A 24 CYS A 27 HIS A 32 CYS A 37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 127 0 2 0 0 0 3 6 0 0 0 3 END