HEADER METAL BINDING PROTEIN 21-JUN-05 2A20 TITLE SOLUTION STRUCTURE OF RIM2 ZINC FINGER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN COMPND 3 2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: ZINC-FINGER DOMAIN, FYVE-TYPE, RESIDUES 83-142; COMPND 6 SYNONYM: RAB3-INTERACTING MOLECULE 2, RIM 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RIMS2, RIM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-KT KEYWDS ZINC-FINGER DOMAIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.DULUBOVA,X.LOU,J.LU,I.HURYEVA,A.ALAM,R.SCHNEGGENBURGER, AUTHOR 2 T.C.SUDHOF,J.RIZO REVDAT 3 24-FEB-09 2A20 1 VERSN REVDAT 2 30-AUG-05 2A20 1 JRNL REVDAT 1 16-AUG-05 2A20 0 JRNL AUTH I.DULUBOVA,X.LOU,J.LU,I.HURYEVA,A.ALAM, JRNL AUTH 2 R.SCHNEGGENBURGER,T.C.SUDHOF,J.RIZO JRNL TITL A MUNC13/RIM/RAB3 TRIPARTITE COMPLEX: FROM PRIMING JRNL TITL 2 TO PLASTICITY? JRNL REF EMBO J. V. 24 2839 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16052212 JRNL DOI 10.1038/SJ.EMBOJ.7600753 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A20 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB033392. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM U-15N,13C RIM2 ZF REMARK 210 DOMAIN, 20 MM PIPES PH 6.9, REMARK 210 150 MM NACL, 1 MM TCEP, 90% REMARK 210 H2O, 10% D2O; 1 MM U-15N RIM2 REMARK 210 ZF DOMAIN, 20 MM PIPES PH 6.9, REMARK 210 150 MM NACL, 1 MM TCEP, 90% REMARK 210 H2O, 10% D2O; 1MM U-15N RIM2 REMARK 210 ZF DOMAIN, 20 MM PIPES PH 6.9, REMARK 210 150 MM NACL, 1 MM TCEP, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, NMRVIEW 5.0.16, REMARK 210 ARIA 2.0A REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 81 REMARK 465 SER A 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 102 94.76 -58.18 REMARK 500 1 TYR A 110 -77.69 -104.94 REMARK 500 1 ARG A 126 135.17 67.19 REMARK 500 1 SER A 127 97.47 -44.08 REMARK 500 1 ASN A 128 -36.46 179.82 REMARK 500 2 GLN A 85 -77.29 -154.49 REMARK 500 2 ILE A 94 -70.38 -124.45 REMARK 500 2 HIS A 96 29.55 45.39 REMARK 500 2 TYR A 110 -73.63 -111.11 REMARK 500 2 ARG A 126 -60.80 -139.99 REMARK 500 2 SER A 127 -38.17 -175.26 REMARK 500 3 ILE A 94 -70.14 -120.72 REMARK 500 3 PHE A 100 174.72 -51.57 REMARK 500 3 ALA A 101 -73.56 -48.12 REMARK 500 3 TYR A 110 -76.54 -104.46 REMARK 500 3 ARG A 126 -170.37 54.15 REMARK 500 3 ASN A 128 39.29 -176.83 REMARK 500 4 PHE A 100 174.24 -54.44 REMARK 500 4 ASP A 102 27.35 45.88 REMARK 500 4 CYS A 104 56.15 -146.66 REMARK 500 4 TYR A 110 -72.15 -111.34 REMARK 500 4 ARG A 126 -82.21 63.75 REMARK 500 4 SER A 127 -53.83 -169.74 REMARK 500 5 ILE A 94 -70.27 -123.84 REMARK 500 5 HIS A 96 25.68 48.12 REMARK 500 5 LYS A 97 -60.59 -109.58 REMARK 500 5 ASP A 102 -63.47 67.38 REMARK 500 5 TYR A 110 -72.42 -111.38 REMARK 500 5 ARG A 126 -71.43 -52.23 REMARK 500 5 SER A 127 -83.73 -49.17 REMARK 500 5 ASN A 128 33.90 -178.10 REMARK 500 6 GLN A 85 83.92 -155.28 REMARK 500 6 LYS A 86 -41.44 -176.99 REMARK 500 6 ILE A 94 -69.77 -127.06 REMARK 500 6 PHE A 100 -175.11 -61.09 REMARK 500 6 ALA A 101 -160.12 -72.70 REMARK 500 6 TYR A 110 -73.75 -107.71 REMARK 500 6 LEU A 125 48.28 -93.98 REMARK 500 6 ARG A 126 -62.62 69.27 REMARK 500 6 SER A 127 -158.16 -63.53 REMARK 500 7 HIS A 96 25.64 48.66 REMARK 500 7 ALA A 101 -72.60 -48.56 REMARK 500 7 ASP A 102 80.46 -177.91 REMARK 500 7 TYR A 110 -75.17 -106.93 REMARK 500 7 ARG A 126 40.66 -92.68 REMARK 500 7 SER A 127 28.33 -144.27 REMARK 500 7 ASN A 128 63.20 66.04 REMARK 500 8 GLN A 85 -63.12 73.19 REMARK 500 8 ILE A 94 -68.71 -126.40 REMARK 500 8 HIS A 96 28.71 48.26 REMARK 500 8 PHE A 100 173.62 -59.63 REMARK 500 8 TYR A 110 -81.93 -104.17 REMARK 500 9 GLU A 84 172.12 61.57 REMARK 500 9 GLN A 85 39.70 -140.06 REMARK 500 9 ILE A 94 -70.39 -115.30 REMARK 500 9 PHE A 100 -171.20 -57.69 REMARK 500 9 CYS A 104 49.23 -146.40 REMARK 500 9 TYR A 110 -74.22 -106.86 REMARK 500 9 ARG A 126 -51.39 -152.94 REMARK 500 9 SER A 127 -70.89 176.66 REMARK 500 10 GLU A 84 -59.19 -177.47 REMARK 500 10 GLN A 85 134.47 63.31 REMARK 500 10 ILE A 94 -72.13 -101.32 REMARK 500 10 ALA A 101 -76.36 -45.33 REMARK 500 10 ASP A 102 47.98 -171.54 REMARK 500 10 TYR A 110 -74.64 -107.45 REMARK 500 10 ARG A 126 171.98 -52.14 REMARK 500 10 SER A 127 -79.48 60.74 REMARK 500 10 ASN A 128 38.60 174.67 REMARK 500 11 ILE A 94 -73.24 -109.31 REMARK 500 11 LYS A 97 -62.91 -109.03 REMARK 500 11 PHE A 100 -175.39 -57.72 REMARK 500 11 TYR A 110 -78.34 -103.60 REMARK 500 11 GLN A 112 16.13 58.52 REMARK 500 11 LEU A 125 43.54 -92.62 REMARK 500 11 SER A 127 -165.80 -162.35 REMARK 500 12 ILE A 94 -72.31 -117.83 REMARK 500 12 HIS A 96 27.61 44.98 REMARK 500 12 PHE A 100 179.27 -57.60 REMARK 500 12 ALA A 101 -169.66 -69.91 REMARK 500 12 TYR A 110 -74.98 -107.25 REMARK 500 12 LEU A 125 -71.78 -92.55 REMARK 500 12 SER A 127 -82.48 54.64 REMARK 500 13 ILE A 94 -69.81 -121.80 REMARK 500 13 HIS A 96 27.56 44.84 REMARK 500 13 ASP A 102 37.15 178.73 REMARK 500 13 CYS A 104 119.41 62.20 REMARK 500 13 TYR A 110 -75.30 -105.18 REMARK 500 13 ARG A 126 -71.55 -139.15 REMARK 500 13 SER A 127 -44.28 -164.62 REMARK 500 14 GLU A 84 126.88 -172.62 REMARK 500 14 LYS A 86 58.98 -106.69 REMARK 500 14 ILE A 94 -56.79 -124.30 REMARK 500 14 LYS A 97 -46.35 -130.63 REMARK 500 14 PHE A 100 79.70 -62.04 REMARK 500 14 ALA A 101 -89.35 49.34 REMARK 500 14 ASP A 102 32.35 -159.18 REMARK 500 14 TYR A 110 -79.23 -102.75 REMARK 500 14 GLN A 112 14.72 59.88 REMARK 500 14 LEU A 125 34.14 -95.08 REMARK 500 14 ARG A 126 155.13 60.15 REMARK 500 14 SER A 127 -173.53 63.97 REMARK 500 14 ASN A 128 69.39 -67.25 REMARK 500 15 GLN A 85 76.92 57.83 REMARK 500 15 HIS A 96 24.67 49.78 REMARK 500 15 ALA A 101 -177.65 -68.13 REMARK 500 15 ASP A 102 85.39 -58.98 REMARK 500 15 TYR A 110 -79.21 -105.64 REMARK 500 15 ARG A 126 25.86 48.79 REMARK 500 16 GLN A 85 -54.73 -154.58 REMARK 500 16 LYS A 97 -43.71 -132.67 REMARK 500 16 ALA A 101 -158.50 44.83 REMARK 500 16 ASP A 102 49.52 -88.83 REMARK 500 16 TYR A 110 -84.11 -104.57 REMARK 500 16 ASN A 128 -43.42 -133.44 REMARK 500 17 GLN A 85 -168.79 45.86 REMARK 500 17 ASP A 102 -71.39 64.69 REMARK 500 17 TYR A 110 -82.20 -103.10 REMARK 500 17 LEU A 125 42.78 -142.55 REMARK 500 17 ARG A 126 -178.18 49.71 REMARK 500 17 GLN A 141 57.31 -147.32 REMARK 500 18 GLN A 85 123.22 61.74 REMARK 500 18 ILE A 94 -67.90 -123.56 REMARK 500 18 LYS A 97 -54.52 -126.28 REMARK 500 18 PHE A 100 177.64 -58.50 REMARK 500 18 ALA A 101 -82.53 -46.55 REMARK 500 18 ASP A 102 27.26 -159.83 REMARK 500 18 TYR A 110 -72.44 -108.05 REMARK 500 18 SER A 127 -58.12 -159.96 REMARK 500 19 GLU A 84 -67.02 -104.76 REMARK 500 19 GLN A 85 110.48 63.94 REMARK 500 19 LYS A 86 -68.26 -100.06 REMARK 500 19 ILE A 94 -55.83 -121.38 REMARK 500 19 LYS A 97 -49.22 -131.59 REMARK 500 19 TYR A 110 -84.00 -103.84 REMARK 500 19 LEU A 125 -86.45 -94.33 REMARK 500 20 GLN A 85 67.97 -169.20 REMARK 500 20 ILE A 94 -72.27 -108.31 REMARK 500 20 HIS A 96 24.98 49.87 REMARK 500 20 LYS A 97 -63.25 -108.07 REMARK 500 20 PHE A 100 173.56 -55.89 REMARK 500 20 ASP A 102 -63.74 67.97 REMARK 500 20 TYR A 110 -74.81 -104.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 292 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 92 SG REMARK 620 2 CYS A 95 SG 110.1 REMARK 620 3 CYS A 116 SG 115.6 99.7 REMARK 620 4 CYS A 119 SG 130.2 105.7 90.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 308 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 134 SG REMARK 620 2 CYS A 108 SG 114.2 REMARK 620 3 CYS A 137 SG 91.5 121.3 REMARK 620 4 CYS A 111 SG 108.7 125.8 88.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 292 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 308 DBREF 2A20 A 83 142 UNP Q9JIS1 RIMS2_RAT 83 142 SEQADV 2A20 GLY A 81 UNP Q9JIS1 CLONING ARTIFACT SEQADV 2A20 SER A 82 UNP Q9JIS1 CLONING ARTIFACT SEQRES 1 A 62 GLY SER GLN GLU GLN LYS GLY ASP ALA PRO THR CYS GLY SEQRES 2 A 62 ILE CYS HIS LYS THR LYS PHE ALA ASP GLY CYS GLY HIS SEQRES 3 A 62 ASN CYS SER TYR CYS GLN THR LYS PHE CYS ALA ARG CYS SEQRES 4 A 62 GLY GLY ARG VAL SER LEU ARG SER ASN LYS VAL MET TRP SEQRES 5 A 62 VAL CYS ASN LEU CYS ARG LYS GLN GLN GLU HET ZN A 292 1 HET ZN A 308 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 ASN A 135 GLN A 141 1 7 SHEET 1 A 2 HIS A 106 ASN A 107 0 SHEET 2 A 2 LYS A 114 PHE A 115 -1 O PHE A 115 N HIS A 106 SHEET 1 B 2 GLY A 120 SER A 124 0 SHEET 2 B 2 VAL A 130 CYS A 134 -1 O MET A 131 N VAL A 123 LINK ZN ZN A 292 SG CYS A 92 1555 1555 1.61 LINK ZN ZN A 292 SG CYS A 95 1555 1555 2.66 LINK ZN ZN A 292 SG CYS A 116 1555 1555 2.61 LINK ZN ZN A 292 SG CYS A 119 1555 1555 2.54 LINK ZN ZN A 308 SG CYS A 134 1555 1555 2.59 LINK ZN ZN A 308 SG CYS A 108 1555 1555 1.61 LINK ZN ZN A 308 SG CYS A 137 1555 1555 2.58 LINK ZN ZN A 308 SG CYS A 111 1555 1555 2.59 SITE 1 AC1 5 CYS A 92 ILE A 94 CYS A 95 CYS A 116 SITE 2 AC1 5 CYS A 119 SITE 1 AC2 4 CYS A 108 CYS A 111 CYS A 134 CYS A 137 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 258 0 2 1 4 0 3 6 0 0 0 5 END