HEADER OXIDOREDUCTASE 21-JUN-05 2A1X TITLE HUMAN PHYTANOYL-COA 2-HYDROXYLASE IN COMPLEX WITH IRON AND 2- TITLE 2 OXOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYTANOYL-COA DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHYTANOYL-COA ALPHA-HYDROXYLASE, PHYH, PHYTANIC ACID COMPND 5 OXIDASE, PHYTANOYL-COA 2-HYDROXYLASE; COMPND 6 EC: 1.14.11.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHYH, PAHX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS BETA JELLY ROLL, DOUBLE-STRANDED BETA-HELIX, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.L.KAVANAGH,M.A.MCDONOUGH,T.SEARLES,D.BUTLER,G.BUNKOCZI,F.VON DELFT, AUTHOR 2 A.EDWARDS,C.ARROWSMITH,M.SUNDSTROM,C.J.SCHOFIELD,U.OPPERMANN, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 31-JAN-18 2A1X 1 AUTHOR REVDAT 4 13-JUL-11 2A1X 1 VERSN REVDAT 3 24-FEB-09 2A1X 1 VERSN REVDAT 2 20-DEC-05 2A1X 1 JRNL REVDAT 1 16-AUG-05 2A1X 0 JRNL AUTH M.A.MCDONOUGH,K.L.KAVANAGH,D.BUTLER,T.SEARLES,U.OPPERMANN, JRNL AUTH 2 C.J.SCHOFIELD JRNL TITL STRUCTURE OF HUMAN PHYTANOYL-COA 2-HYDROXYLASE IDENTIFIES JRNL TITL 2 MOLECULAR MECHANISMS OF REFSUM DISEASE JRNL REF J.BIOL.CHEM. V. 280 41101 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16186124 JRNL DOI 10.1074/JBC.M507528200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 9110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 472 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1961 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 51.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.69000 REMARK 3 B22 (A**2) : 3.40000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.696 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.175 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2012 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1795 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2722 ; 1.360 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4133 ; 0.811 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 7.634 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;35.286 ;23.804 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 318 ;16.544 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.882 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2231 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 414 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 369 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1819 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 928 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1182 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 45 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.099 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 19 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.021 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 1.446 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 506 ; 0.307 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2006 ; 2.389 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 810 ; 4.263 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 716 ; 5.662 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9091 17.2925 36.1656 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: -0.0560 REMARK 3 T33: 0.0113 T12: 0.0047 REMARK 3 T13: -0.0164 T23: 0.1451 REMARK 3 L TENSOR REMARK 3 L11: 5.3131 L22: 1.5005 REMARK 3 L33: 3.1446 L12: 0.6034 REMARK 3 L13: -1.2940 L23: 0.2177 REMARK 3 S TENSOR REMARK 3 S11: 0.0409 S12: -0.6886 S13: -0.3403 REMARK 3 S21: 0.1370 S22: -0.1012 S23: -0.0371 REMARK 3 S31: 0.2566 S32: 0.0113 S33: 0.0604 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2A1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.3 M TRI-AMMONIUM REMARK 280 CITRATE, PH 7.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.96450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.33850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.77050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.96450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.33850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.77050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.96450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.33850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.77050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.96450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.33850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.77050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 THR A 33 REMARK 465 ILE A 34 REMARK 465 SER A 35 REMARK 465 SER A 36 REMARK 465 ALA A 37 REMARK 465 SER A 38 REMARK 465 PHE A 39 REMARK 465 HIS A 40 REMARK 465 PRO A 41 REMARK 465 GLN A 42 REMARK 465 ASN A 51 REMARK 465 VAL A 52 REMARK 465 SER A 109 REMARK 465 GLU A 110 REMARK 465 TYR A 111 REMARK 465 ALA A 112 REMARK 465 PRO A 113 REMARK 465 SER A 165 REMARK 465 GLY A 166 REMARK 465 LYS A 167 REMARK 465 LYS A 168 REMARK 465 THR A 169 REMARK 465 SER A 170 REMARK 465 ARG A 171 REMARK 465 HIS A 172 REMARK 465 PRO A 223 REMARK 465 LYS A 224 REMARK 465 TRP A 225 REMARK 465 GLU A 226 REMARK 465 GLY A 227 REMARK 465 GLY A 228 REMARK 465 VAL A 229 REMARK 465 ASN A 230 REMARK 465 LYS A 231 REMARK 465 MET A 232 REMARK 465 PHE A 233 REMARK 465 TYR A 239 REMARK 465 GLU A 303 REMARK 465 VAL A 304 REMARK 465 VAL A 305 REMARK 465 GLY A 306 REMARK 465 ILE A 307 REMARK 465 ALA A 308 REMARK 465 HIS A 309 REMARK 465 LYS A 310 REMARK 465 PHE A 311 REMARK 465 PHE A 312 REMARK 465 GLY A 313 REMARK 465 ALA A 314 REMARK 465 GLU A 315 REMARK 465 ASN A 316 REMARK 465 SER A 317 REMARK 465 VAL A 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 43 N CB CG CD OE1 NE2 REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 ASN A 50 CG OD1 ND2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 ASN A 71 CG OD1 ND2 REMARK 470 ARG A 82 NE CZ NH1 NH2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 VAL A 93 CG1 CG2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 SER A 114 OG REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 ARG A 201 NE CZ NH1 NH2 REMARK 470 HIS A 234 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 237 CG CD OE1 NE2 REMARK 470 LYS A 243 CE NZ REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 LYS A 252 NZ REMARK 470 GLN A 268 CG CD OE1 NE2 REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 LYS A 332 CD CE NZ REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 55 -138.27 -114.24 REMARK 500 ASN A 71 63.32 34.79 REMARK 500 LEU A 96 -70.30 -64.78 REMARK 500 PRO A 182 58.67 -92.65 REMARK 500 GLU A 197 -176.59 -170.58 REMARK 500 SER A 200 -164.28 -125.97 REMARK 500 GLN A 237 49.54 -106.43 REMARK 500 GLU A 241 -92.15 -93.51 REMARK 500 LYS A 243 129.03 -173.21 REMARK 500 THR A 336 -72.28 -73.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 234 GLY A 235 -141.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 450 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AKG A 451 O5 REMARK 620 2 ASP A 177 OD1 166.8 REMARK 620 3 HIS A 264 NE2 103.0 89.0 REMARK 620 4 HOH A 463 O 92.0 82.5 89.3 REMARK 620 5 HIS A 175 NE2 96.1 87.5 98.0 167.6 REMARK 620 6 AKG A 451 O2 75.6 91.9 174.5 85.5 87.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 451 DBREF 2A1X A 31 338 UNP O14832 PAHX_HUMAN 31 338 SEQRES 1 A 308 SER GLY THR ILE SER SER ALA SER PHE HIS PRO GLN GLN SEQRES 2 A 308 PHE GLN TYR THR LEU ASP ASN ASN VAL LEU THR LEU GLU SEQRES 3 A 308 GLN ARG LYS PHE TYR GLU GLU ASN GLY PHE LEU VAL ILE SEQRES 4 A 308 LYS ASN LEU VAL PRO ASP ALA ASP ILE GLN ARG PHE ARG SEQRES 5 A 308 ASN GLU PHE GLU LYS ILE CYS ARG LYS GLU VAL LYS PRO SEQRES 6 A 308 LEU GLY LEU THR VAL MET ARG ASP VAL THR ILE SER LYS SEQRES 7 A 308 SER GLU TYR ALA PRO SER GLU LYS MET ILE THR LYS VAL SEQRES 8 A 308 GLN ASP PHE GLN GLU ASP LYS GLU LEU PHE ARG TYR CYS SEQRES 9 A 308 THR LEU PRO GLU ILE LEU LYS TYR VAL GLU CYS PHE THR SEQRES 10 A 308 GLY PRO ASN ILE MET ALA MET HIS THR MET LEU ILE ASN SEQRES 11 A 308 LYS PRO PRO ASP SER GLY LYS LYS THR SER ARG HIS PRO SEQRES 12 A 308 LEU HIS GLN ASP LEU HIS TYR PHE PRO PHE ARG PRO SER SEQRES 13 A 308 ASP LEU ILE VAL CYS ALA TRP THR ALA MET GLU HIS ILE SEQRES 14 A 308 SER ARG ASN ASN GLY CYS LEU VAL VAL LEU PRO GLY THR SEQRES 15 A 308 HIS LYS GLY SER LEU LYS PRO HIS ASP TYR PRO LYS TRP SEQRES 16 A 308 GLU GLY GLY VAL ASN LYS MET PHE HIS GLY ILE GLN ASP SEQRES 17 A 308 TYR GLU GLU ASN LYS ALA ARG VAL HIS LEU VAL MET GLU SEQRES 18 A 308 LYS GLY ASP THR VAL PHE PHE HIS PRO LEU LEU ILE HIS SEQRES 19 A 308 GLY SER GLY GLN ASN LYS THR GLN GLY PHE ARG LYS ALA SEQRES 20 A 308 ILE SER CYS HIS PHE ALA SER ALA ASP CYS HIS TYR ILE SEQRES 21 A 308 ASP VAL LYS GLY THR SER GLN GLU ASN ILE GLU LYS GLU SEQRES 22 A 308 VAL VAL GLY ILE ALA HIS LYS PHE PHE GLY ALA GLU ASN SEQRES 23 A 308 SER VAL ASN LEU LYS ASP ILE TRP MET PHE ARG ALA ARG SEQRES 24 A 308 LEU VAL LYS GLY GLU ARG THR ASN LEU HET FE2 A 450 1 HET AKG A 451 10 HETNAM FE2 FE (II) ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 2 FE2 FE 2+ FORMUL 3 AKG C5 H6 O5 FORMUL 4 HOH *15(H2 O) HELIX 1 1 GLU A 56 GLY A 65 1 10 HELIX 2 2 PRO A 74 ARG A 90 1 17 HELIX 3 3 ASP A 127 LEU A 136 1 10 HELIX 4 4 LEU A 136 GLY A 148 1 13 HELIX 5 5 GLN A 176 PHE A 181 5 6 HELIX 6 6 PRO A 185 ASP A 187 5 3 HELIX 7 7 GLY A 211 GLY A 215 5 5 HELIX 8 8 THR A 295 LYS A 302 5 8 HELIX 9 9 ASN A 319 ALA A 328 1 10 SHEET 1 A 7 PHE A 66 ILE A 69 0 SHEET 2 A 7 THR A 255 PHE A 258 -1 O PHE A 257 N LEU A 67 SHEET 3 A 7 ILE A 189 ALA A 195 -1 N TRP A 193 O VAL A 256 SHEET 4 A 7 ARG A 275 SER A 284 -1 O CYS A 280 N ALA A 192 SHEET 5 A 7 ILE A 151 LYS A 161 -1 N ILE A 159 O ALA A 277 SHEET 6 A 7 LYS A 120 GLN A 122 -1 N VAL A 121 O LEU A 158 SHEET 7 A 7 THR A 99 MET A 101 -1 N THR A 99 O GLN A 122 SHEET 1 B 6 PHE A 66 ILE A 69 0 SHEET 2 B 6 THR A 255 PHE A 258 -1 O PHE A 257 N LEU A 67 SHEET 3 B 6 ILE A 189 ALA A 195 -1 N TRP A 193 O VAL A 256 SHEET 4 B 6 ARG A 275 SER A 284 -1 O CYS A 280 N ALA A 192 SHEET 5 B 6 ILE A 151 LYS A 161 -1 N ILE A 159 O ALA A 277 SHEET 6 B 6 ARG A 329 LYS A 332 -1 O LYS A 332 N ILE A 151 SHEET 1 C 2 VAL A 104 ILE A 106 0 SHEET 2 C 2 GLU A 115 MET A 117 -1 O MET A 117 N VAL A 104 SHEET 1 D 2 PHE A 183 ARG A 184 0 SHEET 2 D 2 HIS A 288 TYR A 289 -1 O HIS A 288 N ARG A 184 SHEET 1 E 3 VAL A 246 LEU A 248 0 SHEET 2 E 3 LEU A 206 VAL A 208 -1 N LEU A 206 O LEU A 248 SHEET 3 E 3 HIS A 264 SER A 266 -1 O GLY A 265 N VAL A 207 LINK FE FE2 A 450 O5 AKG A 451 1555 1555 2.29 LINK FE FE2 A 450 OD1 ASP A 177 1555 1555 2.29 LINK FE FE2 A 450 NE2 HIS A 264 1555 1555 2.23 LINK FE FE2 A 450 O HOH A 463 1555 1555 2.19 LINK FE FE2 A 450 NE2 HIS A 175 1555 1555 2.22 LINK FE FE2 A 450 O2 AKG A 451 1555 1555 2.03 CISPEP 1 ARG A 184 PRO A 185 0 -10.29 SITE 1 AC1 5 HIS A 175 ASP A 177 HIS A 264 AKG A 451 SITE 2 AC1 5 HOH A 463 SITE 1 AC2 11 LYS A 120 MET A 157 ILE A 159 HIS A 175 SITE 2 AC2 11 ASP A 177 TRP A 193 HIS A 264 SER A 266 SITE 3 AC2 11 ARG A 275 FE2 A 450 HOH A 463 CRYST1 67.929 86.677 97.541 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014721 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010252 0.00000 MASTER 429 0 2 9 20 0 5 6 0 0 0 24 END