HEADER ISOMERASE 08-JUN-05 1ZXM TITLE HUMAN TOPO IIA ATPASE/AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE II, ALPHA ISOZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TOPO IIA ATPASE; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TOP2A, TOP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSB23 KEYWDS GHKL NUCLEOTIDE-BINDING FOLD, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WEI,A.J.RUTHENBURG,S.K.BECHIS,G.L.VERDINE REVDAT 3 24-FEB-09 1ZXM 1 VERSN REVDAT 2 20-DEC-05 1ZXM 1 JRNL REVDAT 1 23-AUG-05 1ZXM 0 JRNL AUTH H.WEI,A.J.RUTHENBURG,S.K.BECHIS,G.L.VERDINE JRNL TITL NUCLEOTIDE-DEPENDENT DOMAIN MOVEMENT IN THE ATPASE JRNL TITL 2 DOMAIN OF A HUMAN TYPE IIA DNA TOPOISOMERASE. JRNL REF J.BIOL.CHEM. V. 280 37041 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16100112 JRNL DOI 10.1074/JBC.M506520200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 70576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3582 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 528 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZXM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB033238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 160 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70576 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, TRIS CHLORIDE, MAGNESIUM REMARK 280 CHLORIDE, DTT, BME, AMP-PNP., PH 7.4, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.38600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.44350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.64250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.44350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.38600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.64250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS THE DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 346 REMARK 465 GLY A 347 REMARK 465 GLY A 348 REMARK 465 VAL A 349 REMARK 465 GLY A 406 REMARK 465 ILE A 407 REMARK 465 VAL A 408 REMARK 465 GLU A 409 REMARK 465 SER A 410 REMARK 465 ILE A 411 REMARK 465 LEU A 412 REMARK 465 ASN A 413 REMARK 465 TRP A 414 REMARK 465 VAL A 415 REMARK 465 LYS A 416 REMARK 465 PHE A 417 REMARK 465 LYS A 418 REMARK 465 ALA A 419 REMARK 465 GLN A 420 REMARK 465 VAL A 421 REMARK 465 GLN A 422 REMARK 465 LEU A 423 REMARK 465 ASN A 424 REMARK 465 LYS A 425 REMARK 465 LYS A 426 REMARK 465 CYS A 427 REMARK 465 SER A 428 REMARK 465 LYS B 346 REMARK 465 GLY B 347 REMARK 465 GLY B 348 REMARK 465 VAL B 349 REMARK 465 ALA B 350 REMARK 465 LEU B 412 REMARK 465 ASN B 413 REMARK 465 TRP B 414 REMARK 465 VAL B 415 REMARK 465 LYS B 416 REMARK 465 PHE B 417 REMARK 465 LYS B 418 REMARK 465 ALA B 419 REMARK 465 GLN B 420 REMARK 465 VAL B 421 REMARK 465 GLN B 422 REMARK 465 LEU B 423 REMARK 465 ASN B 424 REMARK 465 LYS B 425 REMARK 465 LYS B 426 REMARK 465 CYS B 427 REMARK 465 SER B 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 ASN A 210 CG OD1 ND2 REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 VAL A 288 CG1 CG2 REMARK 470 MET A 303 CG SD CE REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 GLN B 229 CG CD OE1 NE2 REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 GLU B 281 CG CD OE1 OE2 REMARK 470 HIS B 295 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 338 CG1 CG2 REMARK 470 LYS B 344 CG CD CE NZ REMARK 470 LYS B 352 CG CD CE NZ REMARK 470 GLU B 396 CG CD OE1 OE2 REMARK 470 ILE B 403 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 68 -44.19 -136.14 REMARK 500 ASN A 121 -159.02 -102.30 REMARK 500 ARG A 162 -37.30 -151.08 REMARK 500 ASN A 210 34.92 -142.84 REMARK 500 LYS A 276 -84.67 17.32 REMARK 500 LYS A 344 18.39 -69.96 REMARK 500 VAL B 68 -43.07 -138.35 REMARK 500 ASN B 114 59.10 38.71 REMARK 500 ARG B 162 -49.07 -139.63 REMARK 500 ASN B 210 23.18 -155.31 REMARK 500 LYS B 276 -75.34 -34.87 REMARK 500 GLU B 291 132.97 -172.70 REMARK 500 ASN B 370 61.36 38.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1115 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B1120 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH B1124 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B1137 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1142 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1159 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH A1167 DISTANCE = 5.99 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 ANP 901 AND MG 903 ARE ASSOCIATED WITH PROTEIN CHAIN A REMARK 600 ANP 902 AND MG 904 ARE ASSOCIATED WITH PROTEIN CHAIN B REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 901 O1G REMARK 620 2 ANP A 901 O1B 85.8 REMARK 620 3 ANP A 901 O1A 103.3 75.5 REMARK 620 4 HOH A 927 O 87.4 88.8 160.1 REMARK 620 5 HOH A 928 O 89.7 175.4 104.9 91.7 REMARK 620 6 ASN A 91 OD1 169.5 97.2 87.2 82.6 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 904 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP B 902 O1G REMARK 620 2 ANP B 902 O1B 86.5 REMARK 620 3 HOH B 923 O 89.2 174.0 REMARK 620 4 HOH B 922 O 91.2 92.1 92.2 REMARK 620 5 ANP B 902 O1A 104.5 70.5 106.6 155.4 REMARK 620 6 ASN B 91 OD1 172.2 98.7 86.0 82.8 82.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 903 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 904 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 901 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZXN RELATED DB: PDB DBREF 1ZXM A 29 428 UNP P11388 TOP2A_HUMAN 29 428 DBREF 1ZXM B 29 428 UNP P11388 TOP2A_HUMAN 29 428 SEQRES 1 A 400 SER VAL GLU ARG ILE TYR GLN LYS LYS THR GLN LEU GLU SEQRES 2 A 400 HIS ILE LEU LEU ARG PRO ASP THR TYR ILE GLY SER VAL SEQRES 3 A 400 GLU LEU VAL THR GLN GLN MET TRP VAL TYR ASP GLU ASP SEQRES 4 A 400 VAL GLY ILE ASN TYR ARG GLU VAL THR PHE VAL PRO GLY SEQRES 5 A 400 LEU TYR LYS ILE PHE ASP GLU ILE LEU VAL ASN ALA ALA SEQRES 6 A 400 ASP ASN LYS GLN ARG ASP PRO LYS MET SER CYS ILE ARG SEQRES 7 A 400 VAL THR ILE ASP PRO GLU ASN ASN LEU ILE SER ILE TRP SEQRES 8 A 400 ASN ASN GLY LYS GLY ILE PRO VAL VAL GLU HIS LYS VAL SEQRES 9 A 400 GLU LYS MET TYR VAL PRO ALA LEU ILE PHE GLY GLN LEU SEQRES 10 A 400 LEU THR SER SER ASN TYR ASP ASP ASP GLU LYS LYS VAL SEQRES 11 A 400 THR GLY GLY ARG ASN GLY TYR GLY ALA LYS LEU CYS ASN SEQRES 12 A 400 ILE PHE SER THR LYS PHE THR VAL GLU THR ALA SER ARG SEQRES 13 A 400 GLU TYR LYS LYS MET PHE LYS GLN THR TRP MET ASP ASN SEQRES 14 A 400 MET GLY ARG ALA GLY GLU MET GLU LEU LYS PRO PHE ASN SEQRES 15 A 400 GLY GLU ASP TYR THR CYS ILE THR PHE GLN PRO ASP LEU SEQRES 16 A 400 SER LYS PHE LYS MET GLN SER LEU ASP LYS ASP ILE VAL SEQRES 17 A 400 ALA LEU MET VAL ARG ARG ALA TYR ASP ILE ALA GLY SER SEQRES 18 A 400 THR LYS ASP VAL LYS VAL PHE LEU ASN GLY ASN LYS LEU SEQRES 19 A 400 PRO VAL LYS GLY PHE ARG SER TYR VAL ASP MET TYR LEU SEQRES 20 A 400 LYS ASP LYS LEU ASP GLU THR GLY ASN SER LEU LYS VAL SEQRES 21 A 400 ILE HIS GLU GLN VAL ASN HIS ARG TRP GLU VAL CYS LEU SEQRES 22 A 400 THR MET SER GLU LYS GLY PHE GLN GLN ILE SER PHE VAL SEQRES 23 A 400 ASN SER ILE ALA THR SER LYS GLY GLY ARG HIS VAL ASP SEQRES 24 A 400 TYR VAL ALA ASP GLN ILE VAL THR LYS LEU VAL ASP VAL SEQRES 25 A 400 VAL LYS LYS LYS ASN LYS GLY GLY VAL ALA VAL LYS ALA SEQRES 26 A 400 HIS GLN VAL LYS ASN HIS MET TRP ILE PHE VAL ASN ALA SEQRES 27 A 400 LEU ILE GLU ASN PRO THR PHE ASP SER GLN THR LYS GLU SEQRES 28 A 400 ASN MET THR LEU GLN PRO LYS SER PHE GLY SER THR CYS SEQRES 29 A 400 GLN LEU SER GLU LYS PHE ILE LYS ALA ALA ILE GLY CYS SEQRES 30 A 400 GLY ILE VAL GLU SER ILE LEU ASN TRP VAL LYS PHE LYS SEQRES 31 A 400 ALA GLN VAL GLN LEU ASN LYS LYS CYS SER SEQRES 1 B 400 SER VAL GLU ARG ILE TYR GLN LYS LYS THR GLN LEU GLU SEQRES 2 B 400 HIS ILE LEU LEU ARG PRO ASP THR TYR ILE GLY SER VAL SEQRES 3 B 400 GLU LEU VAL THR GLN GLN MET TRP VAL TYR ASP GLU ASP SEQRES 4 B 400 VAL GLY ILE ASN TYR ARG GLU VAL THR PHE VAL PRO GLY SEQRES 5 B 400 LEU TYR LYS ILE PHE ASP GLU ILE LEU VAL ASN ALA ALA SEQRES 6 B 400 ASP ASN LYS GLN ARG ASP PRO LYS MET SER CYS ILE ARG SEQRES 7 B 400 VAL THR ILE ASP PRO GLU ASN ASN LEU ILE SER ILE TRP SEQRES 8 B 400 ASN ASN GLY LYS GLY ILE PRO VAL VAL GLU HIS LYS VAL SEQRES 9 B 400 GLU LYS MET TYR VAL PRO ALA LEU ILE PHE GLY GLN LEU SEQRES 10 B 400 LEU THR SER SER ASN TYR ASP ASP ASP GLU LYS LYS VAL SEQRES 11 B 400 THR GLY GLY ARG ASN GLY TYR GLY ALA LYS LEU CYS ASN SEQRES 12 B 400 ILE PHE SER THR LYS PHE THR VAL GLU THR ALA SER ARG SEQRES 13 B 400 GLU TYR LYS LYS MET PHE LYS GLN THR TRP MET ASP ASN SEQRES 14 B 400 MET GLY ARG ALA GLY GLU MET GLU LEU LYS PRO PHE ASN SEQRES 15 B 400 GLY GLU ASP TYR THR CYS ILE THR PHE GLN PRO ASP LEU SEQRES 16 B 400 SER LYS PHE LYS MET GLN SER LEU ASP LYS ASP ILE VAL SEQRES 17 B 400 ALA LEU MET VAL ARG ARG ALA TYR ASP ILE ALA GLY SER SEQRES 18 B 400 THR LYS ASP VAL LYS VAL PHE LEU ASN GLY ASN LYS LEU SEQRES 19 B 400 PRO VAL LYS GLY PHE ARG SER TYR VAL ASP MET TYR LEU SEQRES 20 B 400 LYS ASP LYS LEU ASP GLU THR GLY ASN SER LEU LYS VAL SEQRES 21 B 400 ILE HIS GLU GLN VAL ASN HIS ARG TRP GLU VAL CYS LEU SEQRES 22 B 400 THR MET SER GLU LYS GLY PHE GLN GLN ILE SER PHE VAL SEQRES 23 B 400 ASN SER ILE ALA THR SER LYS GLY GLY ARG HIS VAL ASP SEQRES 24 B 400 TYR VAL ALA ASP GLN ILE VAL THR LYS LEU VAL ASP VAL SEQRES 25 B 400 VAL LYS LYS LYS ASN LYS GLY GLY VAL ALA VAL LYS ALA SEQRES 26 B 400 HIS GLN VAL LYS ASN HIS MET TRP ILE PHE VAL ASN ALA SEQRES 27 B 400 LEU ILE GLU ASN PRO THR PHE ASP SER GLN THR LYS GLU SEQRES 28 B 400 ASN MET THR LEU GLN PRO LYS SER PHE GLY SER THR CYS SEQRES 29 B 400 GLN LEU SER GLU LYS PHE ILE LYS ALA ALA ILE GLY CYS SEQRES 30 B 400 GLY ILE VAL GLU SER ILE LEU ASN TRP VAL LYS PHE LYS SEQRES 31 B 400 ALA GLN VAL GLN LEU ASN LYS LYS CYS SER HET MG A 903 1 HET MG B 904 1 HET ANP A 901 31 HET ANP B 902 31 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 MG 2(MG 2+) FORMUL 5 ANP 2(C10 H17 N6 O12 P3) FORMUL 7 HOH *528(H2 O) HELIX 1 1 SER A 29 TYR A 34 1 6 HELIX 2 2 THR A 38 ARG A 46 1 9 HELIX 3 3 PRO A 47 GLY A 52 1 6 HELIX 4 4 VAL A 78 ASP A 99 1 22 HELIX 5 5 VAL A 137 GLN A 144 1 8 HELIX 6 6 ASP A 152 LYS A 156 5 5 HELIX 7 7 TYR A 165 PHE A 173 1 9 HELIX 8 8 LEU A 223 LYS A 227 5 5 HELIX 9 9 ASP A 232 THR A 250 1 19 HELIX 10 10 GLY A 266 LYS A 276 1 11 HELIX 11 11 ARG A 324 LYS A 342 1 19 HELIX 12 12 LYS A 352 ASN A 358 1 7 HELIX 13 13 GLN A 384 PHE A 388 5 5 HELIX 14 14 SER A 395 ILE A 403 1 9 HELIX 15 15 SER B 29 TYR B 34 1 6 HELIX 16 16 THR B 38 ARG B 46 1 9 HELIX 17 17 PRO B 47 GLY B 52 1 6 HELIX 18 18 VAL B 78 ASP B 99 1 22 HELIX 19 19 VAL B 137 GLN B 144 1 8 HELIX 20 20 TYR B 165 PHE B 173 1 9 HELIX 21 21 LEU B 223 LYS B 227 5 5 HELIX 22 22 ASP B 232 THR B 250 1 19 HELIX 23 23 GLY B 266 LYS B 276 1 11 HELIX 24 24 ARG B 324 LYS B 343 1 20 HELIX 25 25 LYS B 352 ASN B 358 1 7 HELIX 26 26 GLN B 384 PHE B 388 5 5 HELIX 27 27 SER B 395 ILE B 403 1 9 HELIX 28 28 GLY B 406 ILE B 411 1 6 SHEET 1 A 2 GLN A 35 LYS A 36 0 SHEET 2 A 2 THR B 147 SER B 148 -1 O SER B 148 N GLN A 35 SHEET 1 B 2 VAL A 57 ASP A 65 0 SHEET 2 B 2 GLY A 69 PHE A 77 -1 O GLY A 69 N ASP A 65 SHEET 1 C 3 ARG A 200 ALA A 201 0 SHEET 2 C 3 LYS A 188 MET A 195 -1 N MET A 195 O ARG A 200 SHEET 3 C 3 GLU A 205 PRO A 208 -1 O GLU A 205 N LYS A 191 SHEET 1 D 8 ARG A 200 ALA A 201 0 SHEET 2 D 8 LYS A 188 MET A 195 -1 N MET A 195 O ARG A 200 SHEET 3 D 8 SER A 174 SER A 183 -1 N THR A 181 O PHE A 190 SHEET 4 D 8 TYR A 214 PRO A 221 -1 O THR A 218 N THR A 178 SHEET 5 D 8 LEU A 115 ASN A 121 -1 N ILE A 116 O PHE A 219 SHEET 6 D 8 CYS A 104 ASP A 110 -1 N ARG A 106 O TRP A 119 SHEET 7 D 8 LYS A 254 LEU A 257 1 O PHE A 256 N VAL A 107 SHEET 8 D 8 ASN A 260 LYS A 261 -1 O ASN A 260 N LEU A 257 SHEET 1 E 2 GLU A 129 HIS A 130 0 SHEET 2 E 2 MET A 135 TYR A 136 -1 O MET A 135 N HIS A 130 SHEET 1 F 2 THR A 147 SER A 148 0 SHEET 2 F 2 GLN B 35 LYS B 36 -1 O GLN B 35 N SER A 148 SHEET 1 G 5 ILE A 289 ASN A 294 0 SHEET 2 G 5 TRP A 297 MET A 303 -1 O LEU A 301 N ILE A 289 SHEET 3 G 5 MET A 360 ALA A 366 -1 O PHE A 363 N CYS A 300 SHEET 4 G 5 GLN A 309 VAL A 314 1 N GLN A 309 O ILE A 362 SHEET 5 G 5 ILE A 317 ALA A 318 -1 O ILE A 317 N VAL A 314 SHEET 1 H 2 GLY A 322 GLY A 323 0 SHEET 2 H 2 ASN A 380 MET A 381 1 O MET A 381 N GLY A 322 SHEET 1 I 2 VAL B 57 ASP B 65 0 SHEET 2 I 2 GLY B 69 PHE B 77 -1 O GLY B 69 N ASP B 65 SHEET 1 J 3 ARG B 200 ALA B 201 0 SHEET 2 J 3 LYS B 188 MET B 195 -1 N MET B 195 O ARG B 200 SHEET 3 J 3 GLU B 205 PRO B 208 -1 O GLU B 205 N LYS B 191 SHEET 1 K 8 ARG B 200 ALA B 201 0 SHEET 2 K 8 LYS B 188 MET B 195 -1 N MET B 195 O ARG B 200 SHEET 3 K 8 SER B 174 SER B 183 -1 N THR B 181 O PHE B 190 SHEET 4 K 8 TYR B 214 PRO B 221 -1 O THR B 218 N THR B 178 SHEET 5 K 8 LEU B 115 ASN B 121 -1 N ILE B 116 O PHE B 219 SHEET 6 K 8 CYS B 104 ASP B 110 -1 N ASP B 110 O LEU B 115 SHEET 7 K 8 LYS B 254 LEU B 257 1 O PHE B 256 N VAL B 107 SHEET 8 K 8 ASN B 260 LYS B 261 -1 O ASN B 260 N LEU B 257 SHEET 1 L 2 GLU B 129 HIS B 130 0 SHEET 2 L 2 MET B 135 TYR B 136 -1 O MET B 135 N HIS B 130 SHEET 1 M 5 ILE B 289 ASN B 294 0 SHEET 2 M 5 TRP B 297 MET B 303 -1 O LEU B 301 N ILE B 289 SHEET 3 M 5 MET B 360 ALA B 366 -1 O PHE B 363 N CYS B 300 SHEET 4 M 5 GLN B 309 VAL B 314 1 N GLN B 309 O ILE B 362 SHEET 5 M 5 ILE B 317 ALA B 318 -1 O ILE B 317 N VAL B 314 SHEET 1 N 2 GLY B 322 GLY B 323 0 SHEET 2 N 2 ASN B 380 MET B 381 1 O MET B 381 N GLY B 322 LINK O1G ANP A 901 MG MG A 903 1555 1555 2.02 LINK O1B ANP A 901 MG MG A 903 1555 1555 2.04 LINK MG MG A 903 O1A ANP A 901 1555 1555 2.44 LINK MG MG A 903 O HOH A 927 1555 1555 2.28 LINK MG MG A 903 O HOH A 928 1555 1555 2.01 LINK MG MG A 903 OD1 ASN A 91 1555 1555 2.05 LINK O1G ANP B 902 MG MG B 904 1555 1555 2.02 LINK O1B ANP B 902 MG MG B 904 1555 1555 1.96 LINK MG MG B 904 O HOH B 923 1555 1555 2.03 LINK MG MG B 904 O HOH B 922 1555 1555 2.12 LINK MG MG B 904 O1A ANP B 902 1555 1555 2.59 LINK MG MG B 904 OD1 ASN B 91 1555 1555 2.15 SITE 1 AC1 4 ASN A 91 ANP A 901 HOH A 927 HOH A 928 SITE 1 AC2 4 ASN B 91 ANP B 902 HOH B 922 HOH B 923 SITE 1 AC3 31 GLU A 87 ASN A 91 ASN A 95 ARG A 98 SITE 2 AC3 31 ASN A 120 ILE A 125 ILE A 141 PHE A 142 SITE 3 AC3 31 THR A 147 SER A 148 SER A 149 ASN A 150 SITE 4 AC3 31 GLY A 161 ARG A 162 ASN A 163 GLY A 164 SITE 5 AC3 31 TYR A 165 GLY A 166 ALA A 167 LYS A 168 SITE 6 AC3 31 THR A 215 GLN A 376 LYS A 378 MG A 903 SITE 7 AC3 31 HOH A 924 HOH A 927 HOH A 928 HOH A 931 SITE 8 AC3 31 HOH A 933 HOH A 992 TYR B 34 SITE 1 AC4 28 TYR A 34 HOH A 954 GLU B 87 ASN B 91 SITE 2 AC4 28 ASN B 95 ASN B 120 ILE B 125 ILE B 141 SITE 3 AC4 28 PHE B 142 THR B 147 SER B 148 SER B 149 SITE 4 AC4 28 ASN B 150 GLY B 161 ARG B 162 ASN B 163 SITE 5 AC4 28 GLY B 164 TYR B 165 GLY B 166 ALA B 167 SITE 6 AC4 28 LYS B 168 GLN B 376 LYS B 378 MG B 904 SITE 7 AC4 28 HOH B 905 HOH B 915 HOH B 922 HOH B 923 CRYST1 70.772 75.285 164.887 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014130 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006065 0.00000 MASTER 400 0 4 28 48 0 17 6 0 0 0 62 END