HEADER TOXIN 31-MAY-05 1ZUF TITLE SOLUTION STRUCTURE OF DLP-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSIN-LIKE PEPTIDE 2/4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DLP-4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS HELIX, ANTIPARALLEL BETA-SHEET, TOXIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.M.TORRES,C.TSAMPAZI,D.P.GERAGHTY,P.S.BANSAL,P.F.ALEWOOD, AUTHOR 2 P.W.KUCHEL REVDAT 3 24-FEB-09 1ZUF 1 VERSN REVDAT 2 01-NOV-05 1ZUF 1 JRNL REVDAT 1 02-AUG-05 1ZUF 0 JRNL AUTH A.M.TORRES,C.TSAMPAZI,D.P.GERAGHTY,P.S.BANSAL, JRNL AUTH 2 P.F.ALEWOOD,P.W.KUCHEL JRNL TITL D-AMINO ACID RESIDUE IN A DEFENSIN-LIKE PEPTIDE JRNL TITL 2 FROM PLATYPUS VENOM: EFFECT ON STRUCTURE AND JRNL TITL 3 CHROMATOGRAPHIC PROPERTIES. JRNL REF BIOCHEM.J. V. 391 215 2005 JRNL REFN ISSN 0264-6021 JRNL PMID 16033333 JRNL DOI 10.1042/BJ20050900 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.M.TORRES,G.M.DE PLATER,M.DOVERSKOG, REMARK 1 AUTH 2 L.C.BIRINYI-STRACHAN,G.M.NICHOLSON,C.H.GALLAGHER, REMARK 1 AUTH 3 P.W.KUCHEL REMARK 1 TITL DEFENSIN-LIKE PEPTIDE-2 FROM PLATYPUS VENOM: REMARK 1 TITL 2 MEMBER OF A CLASS OF PEPTIDES WITH A DISTINCT REMARK 1 TITL 3 STRUCTURAL FOLD REMARK 1 REF BIOCHEM.J. V. 348 649 2000 REMARK 1 REFN ISSN 0264-6021 REMARK 1 PMID 10839998 REMARK 1 DOI 10.1042/0264-6021:3480649 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 451 RESTRAINTS, 432 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 7 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 12 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS. REMARK 4 REMARK 4 1ZUF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB033131. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM DLP-4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, XEASY 1.3.13, REMARK 210 INFIT, NOAH, DYANA 1.5, CNS 1.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 17 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 3 -35.94 173.73 REMARK 500 1 PHE A 4 85.26 -61.36 REMARK 500 1 GLU A 5 -74.45 -44.12 REMARK 500 1 GLN A 7 172.45 172.57 REMARK 500 1 ALA A 8 176.44 -59.36 REMARK 500 1 SER A 13 163.46 62.97 REMARK 500 1 ARG A 17 -164.30 -128.20 REMARK 500 1 ASN A 23 38.50 -150.18 REMARK 500 1 PRO A 26 80.22 -59.91 REMARK 500 1 GLU A 33 -56.62 178.53 REMARK 500 2 PHE A 3 64.77 60.76 REMARK 500 2 GLU A 5 95.60 56.27 REMARK 500 2 GLN A 7 170.72 175.99 REMARK 500 2 ALA A 8 -172.93 -68.45 REMARK 500 2 SER A 13 84.31 62.12 REMARK 500 2 ARG A 17 -165.48 -124.12 REMARK 500 2 ASN A 23 40.19 -150.18 REMARK 500 2 PRO A 26 83.38 -57.11 REMARK 500 2 CYS A 32 -78.65 -93.39 REMARK 500 2 GLU A 33 -51.44 -179.49 REMARK 500 3 PHE A 3 -50.13 177.93 REMARK 500 3 GLN A 7 155.03 168.42 REMARK 500 3 SER A 11 -64.60 -90.09 REMARK 500 3 SER A 13 147.85 66.21 REMARK 500 3 ASN A 23 28.93 -148.01 REMARK 500 3 PRO A 26 82.86 -56.67 REMARK 500 3 CYS A 32 -73.78 -90.03 REMARK 500 3 GLU A 33 -49.10 -179.13 REMARK 500 4 PHE A 3 -39.13 -179.89 REMARK 500 4 PHE A 4 -58.09 -171.30 REMARK 500 4 GLU A 5 88.58 177.83 REMARK 500 4 GLN A 7 157.62 174.58 REMARK 500 4 HIS A 12 21.21 -147.36 REMARK 500 4 SER A 13 178.84 53.25 REMARK 500 4 CYS A 16 94.78 -61.69 REMARK 500 4 ARG A 17 -163.63 -116.58 REMARK 500 4 ASN A 23 40.13 -150.08 REMARK 500 4 PRO A 26 90.43 -50.52 REMARK 500 4 GLU A 33 -53.06 -179.45 REMARK 500 4 GLU A 41 106.77 -58.13 REMARK 500 5 MET A 2 -57.96 -140.80 REMARK 500 5 PHE A 3 -171.94 -55.99 REMARK 500 5 MET A 6 -166.82 -101.56 REMARK 500 5 GLN A 7 179.82 169.94 REMARK 500 5 SER A 13 143.78 63.32 REMARK 500 5 CYS A 16 89.32 -66.37 REMARK 500 5 ARG A 17 -166.26 -118.18 REMARK 500 5 ASN A 23 40.00 -150.02 REMARK 500 5 PRO A 26 87.72 -52.49 REMARK 500 5 CYS A 32 -69.50 -94.43 REMARK 500 5 GLU A 33 -46.66 178.54 REMARK 500 6 PHE A 4 -163.34 -164.67 REMARK 500 6 GLU A 5 98.21 179.28 REMARK 500 6 GLN A 7 -172.45 178.05 REMARK 500 6 SER A 13 126.55 67.34 REMARK 500 6 CYS A 16 86.25 -62.51 REMARK 500 6 ARG A 22 40.29 -97.67 REMARK 500 6 TRP A 29 -178.71 47.75 REMARK 500 6 THR A 30 161.72 63.37 REMARK 500 6 GLU A 33 -44.08 -178.47 REMARK 500 7 PHE A 3 79.13 60.34 REMARK 500 7 GLN A 7 160.41 175.53 REMARK 500 7 SER A 13 179.95 56.95 REMARK 500 7 CYS A 16 99.69 -67.05 REMARK 500 7 ARG A 17 -164.65 -120.51 REMARK 500 7 ASN A 23 42.67 -149.29 REMARK 500 7 PRO A 26 93.57 -66.78 REMARK 500 7 TRP A 29 -159.10 38.58 REMARK 500 7 THR A 30 -179.16 51.73 REMARK 500 7 CYS A 32 -72.72 -90.29 REMARK 500 7 GLU A 33 -39.88 -178.61 REMARK 500 8 MET A 2 149.48 -176.70 REMARK 500 8 PHE A 3 145.41 63.15 REMARK 500 8 PHE A 4 83.08 -167.57 REMARK 500 8 GLN A 7 159.63 177.76 REMARK 500 8 SER A 13 -168.46 57.78 REMARK 500 8 CYS A 16 100.64 -57.56 REMARK 500 8 ARG A 17 -159.72 -119.27 REMARK 500 8 TRP A 29 173.29 54.28 REMARK 500 8 THR A 30 162.90 67.02 REMARK 500 8 GLU A 33 -49.16 -178.38 REMARK 500 9 MET A 2 -64.93 -108.95 REMARK 500 9 PHE A 3 88.15 60.81 REMARK 500 9 MET A 6 -68.32 -156.33 REMARK 500 9 GLN A 7 -176.16 65.61 REMARK 500 9 SER A 11 30.96 -98.23 REMARK 500 9 HIS A 12 29.43 -145.49 REMARK 500 9 SER A 13 -176.12 58.35 REMARK 500 9 ARG A 17 -161.84 -110.75 REMARK 500 9 TRP A 29 -159.70 36.87 REMARK 500 9 THR A 30 174.79 61.82 REMARK 500 9 GLU A 33 -46.38 -176.23 REMARK 500 9 CYS A 40 157.65 -43.90 REMARK 500 10 PHE A 3 162.77 -48.36 REMARK 500 10 GLU A 5 -42.34 178.21 REMARK 500 10 GLN A 7 155.93 177.36 REMARK 500 10 SER A 13 115.05 61.95 REMARK 500 10 CYS A 16 105.69 -58.32 REMARK 500 10 ARG A 17 -166.54 -116.96 REMARK 500 10 TRP A 29 -158.15 36.79 REMARK 500 10 THR A 30 176.86 64.76 REMARK 500 10 CYS A 32 -72.01 -97.84 REMARK 500 10 GLU A 33 -48.82 -176.83 REMARK 500 10 CYS A 40 156.00 -46.20 REMARK 500 11 PHE A 3 150.68 177.23 REMARK 500 11 PHE A 4 -77.27 -121.49 REMARK 500 11 GLU A 5 28.31 47.83 REMARK 500 11 GLN A 7 170.58 166.80 REMARK 500 11 SER A 13 137.81 63.80 REMARK 500 11 CYS A 16 95.10 -58.80 REMARK 500 11 ARG A 17 -161.89 -123.02 REMARK 500 11 ASN A 23 43.96 -150.26 REMARK 500 11 TRP A 29 -167.43 41.91 REMARK 500 11 THR A 30 167.44 56.61 REMARK 500 11 CYS A 32 -71.45 -89.94 REMARK 500 11 GLU A 33 -56.42 -179.47 REMARK 500 12 MET A 2 94.41 60.93 REMARK 500 12 PHE A 3 97.63 60.64 REMARK 500 12 GLN A 7 158.26 167.92 REMARK 500 12 SER A 13 118.21 64.47 REMARK 500 12 ARG A 17 -162.21 -117.61 REMARK 500 12 ASN A 23 40.69 -146.54 REMARK 500 12 PRO A 26 90.86 -67.78 REMARK 500 12 TRP A 29 -160.11 38.40 REMARK 500 12 THR A 30 169.12 64.89 REMARK 500 12 CYS A 32 -78.03 -89.90 REMARK 500 12 GLU A 33 -54.16 179.92 REMARK 500 13 PHE A 3 -34.77 173.01 REMARK 500 13 GLN A 7 -172.99 168.88 REMARK 500 13 SER A 13 -175.48 57.79 REMARK 500 13 CYS A 16 91.31 -69.78 REMARK 500 13 ARG A 17 -167.04 -103.49 REMARK 500 13 ASP A 18 74.75 -111.13 REMARK 500 13 ASN A 23 -23.96 -150.13 REMARK 500 13 CYS A 32 -71.73 -97.04 REMARK 500 13 GLU A 33 -48.89 -178.49 REMARK 500 14 MET A 2 80.76 61.73 REMARK 500 14 PHE A 3 111.19 60.60 REMARK 500 14 GLN A 7 -169.98 169.33 REMARK 500 14 SER A 13 122.26 65.82 REMARK 500 14 CYS A 16 91.58 -57.22 REMARK 500 14 ARG A 17 -158.64 -107.27 REMARK 500 14 SER A 20 32.72 -97.95 REMARK 500 14 TRP A 29 -179.74 48.32 REMARK 500 14 THR A 30 167.72 59.74 REMARK 500 14 GLU A 33 -55.80 -174.12 REMARK 500 15 PHE A 3 149.44 63.63 REMARK 500 15 PHE A 4 31.43 -98.60 REMARK 500 15 GLN A 7 -167.61 175.24 REMARK 500 15 SER A 13 124.59 62.52 REMARK 500 15 GLU A 21 -72.74 -107.67 REMARK 500 15 ASN A 23 56.49 -115.82 REMARK 500 15 MET A 27 167.23 -45.75 REMARK 500 15 CYS A 32 -70.47 -93.19 REMARK 500 15 GLU A 33 -39.16 -170.74 REMARK 500 16 GLU A 5 -74.54 -43.15 REMARK 500 16 GLN A 7 169.83 173.38 REMARK 500 16 SER A 13 146.37 66.65 REMARK 500 16 CYS A 16 94.35 -66.42 REMARK 500 16 ASN A 23 37.34 -150.08 REMARK 500 16 PRO A 26 90.89 -48.04 REMARK 500 16 TRP A 29 -158.96 37.29 REMARK 500 16 THR A 30 -177.02 62.78 REMARK 500 16 CYS A 32 -71.74 -89.99 REMARK 500 16 GLU A 33 -68.98 -165.42 REMARK 500 17 MET A 2 -93.45 37.72 REMARK 500 17 PHE A 3 106.72 -53.91 REMARK 500 17 GLU A 5 61.44 177.97 REMARK 500 17 GLN A 7 175.80 177.72 REMARK 500 17 SER A 13 -168.04 52.50 REMARK 500 17 ASN A 23 31.51 -150.20 REMARK 500 17 PRO A 26 87.82 -50.80 REMARK 500 17 CYS A 32 -70.87 -89.81 REMARK 500 17 GLU A 33 -44.65 179.16 REMARK 500 18 PHE A 3 157.97 172.49 REMARK 500 18 GLU A 5 -38.89 179.47 REMARK 500 18 MET A 6 -162.76 -59.35 REMARK 500 18 GLN A 7 151.64 175.11 REMARK 500 18 SER A 13 121.54 62.78 REMARK 500 18 ARG A 17 -162.92 -126.54 REMARK 500 18 ASN A 23 34.47 -150.35 REMARK 500 18 PRO A 26 90.25 -50.69 REMARK 500 18 CYS A 32 -67.07 -103.31 REMARK 500 18 GLU A 33 -63.99 -178.77 REMARK 500 19 PHE A 3 -40.89 172.41 REMARK 500 19 PHE A 4 110.16 60.22 REMARK 500 19 GLU A 5 -39.04 178.11 REMARK 500 19 GLN A 7 -171.34 168.01 REMARK 500 19 ARG A 17 -158.65 -110.70 REMARK 500 19 ARG A 22 40.63 -97.06 REMARK 500 19 ALA A 28 55.64 -102.46 REMARK 500 19 TRP A 29 -43.60 -168.10 REMARK 500 19 CYS A 32 -75.08 -89.92 REMARK 500 19 GLU A 33 -46.96 -176.00 REMARK 500 20 PHE A 3 105.92 -47.97 REMARK 500 20 GLU A 5 39.46 178.45 REMARK 500 20 MET A 6 -152.26 -105.01 REMARK 500 20 GLN A 7 146.19 -175.71 REMARK 500 20 ALA A 8 177.26 -55.09 REMARK 500 20 SER A 11 40.07 -108.65 REMARK 500 20 HIS A 12 -51.25 -164.26 REMARK 500 20 SER A 13 100.07 61.64 REMARK 500 20 GLU A 21 -164.50 -75.46 REMARK 500 20 ASN A 23 35.70 -148.18 REMARK 500 20 PRO A 26 91.67 -60.74 REMARK 500 20 TRP A 29 -159.32 37.49 REMARK 500 20 THR A 30 157.37 65.40 REMARK 500 20 CYS A 32 -73.58 -98.38 REMARK 500 20 GLU A 33 -51.06 -179.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D6B RELATED DB: PDB REMARK 900 DLP-2 STRUCTURE WITH ALL AMINO ACIDS IN L-FORM REMARK 900 RELATED ID: 1ZUE RELATED DB: PDB REMARK 900 DLP-2 DBREF 1ZUF A 1 42 UNP P82140 DLP2_ORNAN 1 42 SEQRES 1 A 42 ILE MET PHE PHE GLU MET GLN ALA CYS TRP SER HIS SER SEQRES 2 A 42 GLY VAL CYS ARG ASP LYS SER GLU ARG ASN CYS LYS PRO SEQRES 3 A 42 MET ALA TRP THR TYR CYS GLU ASN ARG ASN GLN LYS CYS SEQRES 4 A 42 CYS GLU TYR SHEET 1 A 2 GLN A 7 ALA A 8 0 SHEET 2 A 2 THR A 30 TYR A 31 1 O TYR A 31 N GLN A 7 SHEET 1 B 2 VAL A 15 ASP A 18 0 SHEET 2 B 2 GLN A 37 CYS A 40 -1 O CYS A 40 N VAL A 15 SSBOND 1 CYS A 9 CYS A 39 1555 1555 2.03 SSBOND 2 CYS A 16 CYS A 32 1555 1555 2.03 SSBOND 3 CYS A 24 CYS A 40 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 298 0 0 0 4 0 0 6 0 0 0 4 END