HEADER ANTIMICROBIAL PROTEIN 10-MAY-05 1ZMQ TITLE CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSIN 6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DEFENSIN, ALPHA 6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DEFA6, DEF6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN INTESTINAL ALPHA-DEFENSIN, PANETH CELLS DEFENSIN, KEYWDS 2 ANTIMICROBIAL, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.SZYK,W.LU REVDAT 6 11-OCT-17 1ZMQ 1 REMARK REVDAT 5 16-NOV-11 1ZMQ 1 HETATM REVDAT 4 13-JUL-11 1ZMQ 1 VERSN REVDAT 3 24-FEB-09 1ZMQ 1 VERSN REVDAT 2 12-DEC-06 1ZMQ 1 JRNL REVDAT 1 30-MAY-06 1ZMQ 0 JRNL AUTH A.SZYK,Z.WU,K.TUCKER,D.YANG,W.LU,J.LUBKOWSKI JRNL TITL CRYSTAL STRUCTURES OF HUMAN {ALPHA}-DEFENSINS HNP4, HD5, AND JRNL TITL 2 HD6. JRNL REF PROTEIN SCI. V. 15 2749 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 17088326 JRNL DOI 10.1110/PS.062336606 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 16138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1056 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1424 ; 1.670 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 6.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 148 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 804 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 439 ; 0.270 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 257 ; 0.322 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.266 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.272 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 632 ; 1.290 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1012 ; 2.131 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 424 ; 1.659 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 412 ; 2.686 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6365 13.3118 40.7353 REMARK 3 T TENSOR REMARK 3 T11: 0.0006 T22: 0.1323 REMARK 3 T33: 0.0371 T12: -0.0067 REMARK 3 T13: -0.0035 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.7251 L22: 1.5294 REMARK 3 L33: 3.1227 L12: 0.7566 REMARK 3 L13: -2.3049 L23: -1.1475 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.2047 S13: 0.0669 REMARK 3 S21: -0.0222 S22: 0.0280 S23: -0.0095 REMARK 3 S31: 0.0683 S32: -0.3512 S33: 0.0140 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 32 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3006 15.8939 57.4541 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0901 REMARK 3 T33: 0.0538 T12: -0.0335 REMARK 3 T13: 0.0056 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.1469 L22: 0.4456 REMARK 3 L33: 3.3218 L12: 0.2158 REMARK 3 L13: -2.4661 L23: -0.9944 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: -0.1592 S13: 0.0694 REMARK 3 S21: 0.0418 S22: -0.0058 S23: 0.0234 REMARK 3 S31: -0.0693 S32: 0.2437 S33: -0.0821 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7852 14.5875 39.5199 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: 0.0472 REMARK 3 T33: 0.0617 T12: 0.0018 REMARK 3 T13: -0.0012 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.0363 L22: 0.5132 REMARK 3 L33: 1.4240 L12: 0.1645 REMARK 3 L13: -0.7546 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.0401 S13: 0.0316 REMARK 3 S21: 0.0443 S22: 0.0045 S23: -0.0069 REMARK 3 S31: 0.0778 S32: -0.0321 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 32 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1608 1.6313 59.2980 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.0390 REMARK 3 T33: 0.0353 T12: -0.0115 REMARK 3 T13: 0.0099 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.6489 L22: 0.5834 REMARK 3 L33: 3.1256 L12: 0.2516 REMARK 3 L13: -0.7659 L23: -1.0668 REMARK 3 S TENSOR REMARK 3 S11: -0.1080 S12: 0.0518 S13: -0.0212 REMARK 3 S21: -0.1405 S22: -0.0093 S23: 0.0124 REMARK 3 S31: 0.4603 S32: -0.0259 S33: 0.1173 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: EXPERIMENTAL PHASES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE TRIHYDRATE, 2-METHYL REMARK 280 -2,4-PENTANEDIOL, CALCIUM CHLORIDE DEHYDRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.64850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.03400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.03400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.32425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.03400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.03400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.97275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.03400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.03400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.32425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.03400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.03400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.97275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.64850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHOR STATES THE BIOLOGICAL UNIT IS A PROBABLE REMARK 300 MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 292 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CL CL A 501 O HOH C 281 1.27 REMARK 500 NH1 ARG B 8 O HOH B 196 1.73 REMARK 500 OD1 ASN B 26 O HOH B 246 1.93 REMARK 500 NH1 ARG C 28 O HOH C 156 1.96 REMARK 500 OG1 THR A 13 O HOH A 221 1.97 REMARK 500 NE ARG C 28 O HOH C 125 2.04 REMARK 500 N GLY B 24 O HOH B 244 2.05 REMARK 500 O HOH A 224 O HOH A 275 2.06 REMARK 500 CB VAL B 22 O HOH B 257 2.08 REMARK 500 O HOH B 174 O HOH B 241 2.10 REMARK 500 O HOH C 153 O HOH C 176 2.10 REMARK 500 O HOH D 194 O HOH D 264 2.14 REMARK 500 CB MET B 23 O HOH B 244 2.18 REMARK 500 CB THR A 19 O HOH A 212 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CL CL D 503 O HOH A 242 3545 1.66 REMARK 500 O HOH B 128 O HOH C 281 4554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 28 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 28 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 17 58.84 -117.38 REMARK 500 MET B 23 -124.41 41.82 REMARK 500 TYR C 17 55.64 -110.06 REMARK 500 MET D 23 -124.89 47.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DFN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RELATED HUMAN ALPHA-DEFENSIN REMARK 900 RELATED ID: 1ZMH RELATED DB: PDB REMARK 900 RELATED ID: 1ZMI RELATED DB: PDB REMARK 900 RELATED ID: 1ZMK RELATED DB: PDB REMARK 900 RELATED ID: 1ZMM RELATED DB: PDB REMARK 900 RELATED ID: 1ZMP RELATED DB: PDB DBREF 1ZMQ A 1 32 UNP Q01524 DEF6_HUMAN 69 100 DBREF 1ZMQ B 1 32 UNP Q01524 DEF6_HUMAN 69 100 DBREF 1ZMQ C 1 32 UNP Q01524 DEF6_HUMAN 69 100 DBREF 1ZMQ D 1 32 UNP Q01524 DEF6_HUMAN 69 100 SEQRES 1 A 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 A 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 A 32 HIS ARG PHE CYS CYS LEU SEQRES 1 B 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 B 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 B 32 HIS ARG PHE CYS CYS LEU SEQRES 1 C 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 C 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 C 32 HIS ARG PHE CYS CYS LEU SEQRES 1 D 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 D 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 D 32 HIS ARG PHE CYS CYS LEU HET CL A 501 1 HET CL A 505 1 HET CL B 506 1 HET CL C 502 1 HET CL C 507 1 HET CL C 508 1 HET CL D 503 1 HET CL D 504 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 8(CL 1-) FORMUL 13 HOH *192(H2 O) SHEET 1 A12 CYS B 4 ARG B 7 0 SHEET 2 A12 ILE B 25 CYS B 31 -1 O ARG B 28 N ARG B 7 SHEET 3 A12 TYR B 15 VAL B 22 -1 N CYS B 20 O HIS B 27 SHEET 4 A12 TYR A 15 VAL A 22 -1 N THR A 21 O THR B 21 SHEET 5 A12 ILE A 25 LEU A 32 -1 O PHE A 29 N TYR A 17 SHEET 6 A12 PHE A 2 ARG A 7 -1 N HIS A 5 O CYS A 30 SHEET 7 A12 PHE C 2 ARG C 7 -1 O CYS C 4 N PHE A 2 SHEET 8 A12 ILE C 25 LEU C 32 -1 O ARG C 28 N ARG C 7 SHEET 9 A12 TYR C 15 VAL C 22 -1 N TYR C 15 O CYS C 31 SHEET 10 A12 TYR D 15 VAL D 22 -1 O THR D 21 N THR C 21 SHEET 11 A12 ILE D 25 LEU D 32 -1 O HIS D 27 N CYS D 20 SHEET 12 A12 THR D 3 ARG D 7 -1 N ARG D 7 O ARG D 28 SSBOND 1 CYS A 4 CYS A 31 1555 1555 2.07 SSBOND 2 CYS A 6 CYS A 20 1555 1555 2.00 SSBOND 3 CYS A 10 CYS A 30 1555 1555 2.07 SSBOND 4 CYS B 4 CYS B 31 1555 1555 2.07 SSBOND 5 CYS B 6 CYS B 20 1555 1555 2.07 SSBOND 6 CYS B 10 CYS B 30 1555 1555 2.03 SSBOND 7 CYS C 4 CYS C 31 1555 1555 2.08 SSBOND 8 CYS C 6 CYS C 20 1555 1555 2.00 SSBOND 9 CYS C 10 CYS C 30 1555 1555 2.07 SSBOND 10 CYS D 4 CYS D 31 1555 1555 2.05 SSBOND 11 CYS D 6 CYS D 20 1555 1555 2.07 SSBOND 12 CYS D 10 CYS D 30 1555 1555 2.07 SITE 1 AC1 5 ALA A 1 HIS C 5 HOH C 281 HIS D 5 SITE 2 AC1 5 HOH D 213 SITE 1 AC2 5 ALA A 1 HIS C 5 CYS C 6 CYS D 6 SITE 2 AC2 5 HOH D 213 SITE 1 AC3 7 HIS A 5 HOH A 242 HIS B 5 HOH B 110 SITE 2 AC3 7 ALA C 1 HOH C 259 ALA D 1 SITE 1 AC4 5 HIS A 5 CYS A 6 CYS B 6 HOH B 110 SITE 2 AC4 5 ALA C 1 SITE 1 AC5 4 ALA A 1 HOH A 256 ARG D 7 HOH D 119 SITE 1 AC6 3 TYR B 11 SER B 12 ASN C 26 SITE 1 AC7 5 TYR B 15 HOH B 103 ARG C 8 HIS C 27 SITE 2 AC7 5 HOH C 218 SITE 1 AC8 3 SER C 9 CYS C 10 ARG C 28 CRYST1 62.068 62.068 145.297 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006882 0.00000 MASTER 482 0 8 0 12 0 13 6 0 0 0 12 END