HEADER ISOMERASE, DNA BINDNG PROTEIN 26-APR-05 1ZI0 TITLE A SUPERHELICAL SPIRAL IN ESCHERICHIA COLI DNA GYRASE A C- TITLE 2 TERMINAL DOMAIN IMPARTS UNIDIRECTIONAL SUPERCOILING BIAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GYRA, HISW, NALA, PARD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS BETA PINWHEEL; GYRASE; TOPOISOMERASE; SPIRALLING BETA KEYWDS 2 PINWHEEL; DNA WRAPPING, ISOMERASE, DNA BINDNG PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.J.RUTHENBURG,D.M.GRAYBOSCH,J.C.HUETSCH,G.L.VERDINE REVDAT 5 24-FEB-09 1ZI0 1 VERSN REVDAT 4 16-AUG-05 1ZI0 1 JRNL REVDAT 3 07-JUN-05 1ZI0 1 REMARK REVDAT 2 31-MAY-05 1ZI0 1 EXPDTA REMARK REVDAT 1 24-MAY-05 1ZI0 0 JRNL AUTH A.J.RUTHENBURG,D.M.GRAYBOSCH,J.C.HUETSCH, JRNL AUTH 2 G.L.VERDINE JRNL TITL A SUPERHELICAL SPIRAL IN THE ESCHERICHIA COLI DNA JRNL TITL 2 GYRASE A C-TERMINAL DOMAIN IMPARTS UNIDIRECTIONAL JRNL TITL 3 SUPERCOILING BIAS JRNL REF J.BIOL.CHEM. V. 280 26177 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15897198 JRNL DOI 10.1074/JBC.M502838200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 381578.150 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 32428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2282 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4683 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 388 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 22.38000 REMARK 3 B22 (A**2) : -2.28000 REMARK 3 B33 (A**2) : -20.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.77 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 86.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZI0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB032746. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-03; 07-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : CHESS; NSLS REMARK 200 BEAMLINE : A1; X4A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9360; 0.9739, 0.9786, REMARK 200 0.9791, 0.9795 REMARK 200 MONOCHROMATOR : BENT TRIANGULAR ASYMMETRIC REMARK 200 CUT SI(111) MONOCHROMATER AND REMARK 200 RH-COATED SI MIRROR; KOHZU REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32428 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, PEG 1500, NACL, SODIUM REMARK 280 PHOSPHATE, EDTA, BETA-MERCAPTOETHANOL, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.10800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.71600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.97850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.10800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.71600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.97850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.10800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.71600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.97850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.10800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.71600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.97850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 556 REMARK 465 TYR A 557 REMARK 465 GLU A 558 REMARK 465 ALA A 559 REMARK 465 GLN A 560 REMARK 465 ARG A 561 REMARK 465 ARG A 562 REMARK 465 GLY A 563 REMARK 465 GLY A 564 REMARK 465 LYS A 565 REMARK 465 GLY A 566 REMARK 465 LYS A 567 REMARK 465 SER A 568 REMARK 465 ALA A 569 REMARK 465 ALA A 570 REMARK 465 ARG A 571 REMARK 465 ILE A 572 REMARK 465 LYS A 573 REMARK 465 GLU A 574 REMARK 465 GLU A 575 REMARK 465 GLY B 564 REMARK 465 LYS B 565 REMARK 465 GLY B 566 REMARK 465 LYS B 567 REMARK 465 SER B 568 REMARK 465 ALA B 569 REMARK 465 ALA B 570 REMARK 465 ARG B 571 REMARK 465 ILE B 572 REMARK 465 LYS B 573 REMARK 465 GLU B 574 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 536 CG CD OE1 NE2 REMARK 470 GLN A 546 CG CD OE1 NE2 REMARK 470 ASP A 576 CG OD1 OD2 REMARK 470 LEU A 581 CG CD1 CD2 REMARK 470 LYS A 603 CD CE NZ REMARK 470 GLU A 609 CG CD OE1 OE2 REMARK 470 THR A 611 OG1 CG2 REMARK 470 ARG A 612 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 615 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 621 CG OD1 ND2 REMARK 470 GLN A 627 CD OE1 NE2 REMARK 470 ASP A 628 CG OD1 OD2 REMARK 470 GLU A 639 CG CD OE1 OE2 REMARK 470 GLU A 641 CG CD OE1 OE2 REMARK 470 ARG A 665 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 666 CD1 CD2 REMARK 470 ASP A 678 CG OD1 OD2 REMARK 470 LYS A 707 CD CE NZ REMARK 470 ARG A 725 CZ NH1 NH2 REMARK 470 GLU A 728 CD OE1 OE2 REMARK 470 LYS A 731 CE NZ REMARK 470 LYS A 764 CG CD CE NZ REMARK 470 LYS A 769 CG CD CE NZ REMARK 470 LYS A 775 CG CD CE NZ REMARK 470 GLU A 778 CD OE1 OE2 REMARK 470 ILE A 798 CG1 CG2 CD1 REMARK 470 ILE A 814 CD1 REMARK 470 ARG A 826 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 829 CG CD OE1 OE2 REMARK 470 ASP A 830 CG OD1 OD2 REMARK 470 GLU A 841 CG CD OE1 OE2 REMARK 470 GLN B 536 CD OE1 NE2 REMARK 470 GLU B 537 CG CD OE1 OE2 REMARK 470 GLU B 556 CG CD OE1 OE2 REMARK 470 ARG B 561 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 562 NE CZ NH1 NH2 REMARK 470 GLU B 575 CG CD OE1 OE2 REMARK 470 HIS B 587 ND1 CD2 CE1 NE2 REMARK 470 ARG B 596 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 603 CD CE NZ REMARK 470 GLU B 609 CG CD OE1 OE2 REMARK 470 ARG B 612 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 615 NE CZ NH1 NH2 REMARK 470 ARG B 617 CZ NH1 NH2 REMARK 470 GLU B 626 CD OE1 OE2 REMARK 470 GLN B 627 CD OE1 NE2 REMARK 470 GLU B 639 CG CD OE1 OE2 REMARK 470 GLU B 641 CG CD OE1 OE2 REMARK 470 GLU B 642 CG CD OE1 OE2 REMARK 470 GLU B 662 CD OE1 OE2 REMARK 470 ASN B 664 CG OD1 ND2 REMARK 470 ARG B 665 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 667 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 675 CE NZ REMARK 470 ASP B 678 CG OD1 OD2 REMARK 470 GLU B 691 CG CD OE1 OE2 REMARK 470 GLU B 700 CG CD OE1 OE2 REMARK 470 ARG B 712 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 725 CD NE CZ NH1 NH2 REMARK 470 GLU B 728 CG CD OE1 OE2 REMARK 470 ASP B 741 CG OD1 OD2 REMARK 470 LYS B 764 CG CD CE NZ REMARK 470 LYS B 769 CG CD CE NZ REMARK 470 ILE B 772 CD1 REMARK 470 LYS B 775 CG CD CE NZ REMARK 470 GLU B 778 CG CD OE1 OE2 REMARK 470 ARG B 779 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 791 CG OD1 OD2 REMARK 470 ILE B 798 CG2 CD1 REMARK 470 THR B 803 OG1 CG2 REMARK 470 LEU B 804 CD1 CD2 REMARK 470 ARG B 808 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 825 CD1 REMARK 470 ARG B 826 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 829 CG CD OE1 OE2 REMARK 470 ASP B 830 OD1 REMARK 470 GLN B 837 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 552 149.44 -173.20 REMARK 500 THR A 611 -178.09 67.75 REMARK 500 ARG A 612 -145.79 48.48 REMARK 500 ALA A 614 173.75 74.60 REMARK 500 ARG A 615 -171.50 88.73 REMARK 500 ASN A 717 52.03 -94.78 REMARK 500 LYS A 764 -139.48 -117.91 REMARK 500 GLU A 811 38.72 -99.24 REMARK 500 VAL A 815 -167.79 -119.83 REMARK 500 ARG A 826 95.89 -57.06 REMARK 500 ALA A 828 111.72 76.89 REMARK 500 GLU A 829 140.86 -38.21 REMARK 500 GLN B 536 96.80 72.09 REMARK 500 ARG B 561 -9.02 -54.55 REMARK 500 PRO B 624 59.44 -64.47 REMARK 500 ARG B 665 73.55 -119.42 REMARK 500 ASP B 678 123.58 -33.72 REMARK 500 SER B 689 -179.05 -171.01 REMARK 500 ASN B 717 35.83 -87.21 REMARK 500 LYS B 754 177.55 177.53 REMARK 500 LYS B 764 -132.90 -96.97 REMARK 500 ALA B 767 6.05 52.19 REMARK 500 VAL B 815 -155.79 -138.43 REMARK 500 ASN B 818 70.80 -68.06 REMARK 500 ARG B 826 -164.53 -66.34 REMARK 500 GLU B 829 27.43 -66.61 REMARK 500 ASP B 830 22.85 -164.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 26 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH B 51 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B 55 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 73 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH B 74 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH A 53 DISTANCE = 8.79 ANGSTROMS REMARK 525 HOH A 57 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 97 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH B 102 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH B 111 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B 112 DISTANCE = 9.28 ANGSTROMS REMARK 525 HOH A 66 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 69 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH A 78 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH B 141 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B 143 DISTANCE = 10.65 ANGSTROMS REMARK 525 HOH A 95 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 108 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH A 113 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH A 125 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A 127 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 128 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH A 129 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH A 131 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 132 DISTANCE = 9.15 ANGSTROMS REMARK 525 HOH A 133 DISTANCE = 9.77 ANGSTROMS REMARK 525 HOH A 135 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH A 136 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 137 DISTANCE = 8.28 ANGSTROMS REMARK 525 HOH A 139 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 140 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 145 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 150 DISTANCE = 6.05 ANGSTROMS DBREF 1ZI0 A 535 841 UNP P09097 GYRA_ECOLI 535 841 DBREF 1ZI0 B 535 841 UNP P09097 GYRA_ECOLI 535 841 SEQRES 1 A 307 THR GLN GLU ASP VAL VAL VAL THR LEU SER HIS GLN GLY SEQRES 2 A 307 TYR VAL LYS TYR GLN PRO LEU SER GLU TYR GLU ALA GLN SEQRES 3 A 307 ARG ARG GLY GLY LYS GLY LYS SER ALA ALA ARG ILE LYS SEQRES 4 A 307 GLU GLU ASP PHE ILE ASP ARG LEU LEU VAL ALA ASN THR SEQRES 5 A 307 HIS ASP HIS ILE LEU CYS PHE SER SER ARG GLY ARG VAL SEQRES 6 A 307 TYR SER MET LYS VAL TYR GLN LEU PRO GLU ALA THR ARG SEQRES 7 A 307 GLY ALA ARG GLY ARG PRO ILE VAL ASN LEU LEU PRO LEU SEQRES 8 A 307 GLU GLN ASP GLU ARG ILE THR ALA ILE LEU PRO VAL THR SEQRES 9 A 307 GLU PHE GLU GLU GLY VAL LYS VAL PHE MET ALA THR ALA SEQRES 10 A 307 ASN GLY THR VAL LYS LYS THR VAL LEU THR GLU PHE ASN SEQRES 11 A 307 ARG LEU ARG THR ALA GLY LYS VAL ALA ILE LYS LEU VAL SEQRES 12 A 307 ASP GLY ASP GLU LEU ILE GLY VAL ASP LEU THR SER GLY SEQRES 13 A 307 GLU ASP GLU VAL MET LEU PHE SER ALA GLU GLY LYS VAL SEQRES 14 A 307 VAL ARG PHE LYS GLU SER SER VAL ARG ALA MET GLY CYS SEQRES 15 A 307 ASN THR THR GLY VAL ARG GLY ILE ARG LEU GLY GLU GLY SEQRES 16 A 307 ASP LYS VAL VAL SER LEU ILE VAL PRO ARG GLY ASP GLY SEQRES 17 A 307 ALA ILE LEU THR ALA THR GLN ASN GLY TYR GLY LYS ARG SEQRES 18 A 307 THR ALA VAL ALA GLU TYR PRO THR LYS SER ARG ALA THR SEQRES 19 A 307 LYS GLY VAL ILE SER ILE LYS VAL THR GLU ARG ASN GLY SEQRES 20 A 307 LEU VAL VAL GLY ALA VAL GLN VAL ASP ASP CYS ASP GLN SEQRES 21 A 307 ILE MET MET ILE THR ASP ALA GLY THR LEU VAL ARG THR SEQRES 22 A 307 ARG VAL SER GLU ILE SER ILE VAL GLY ARG ASN THR GLN SEQRES 23 A 307 GLY VAL ILE LEU ILE ARG THR ALA GLU ASP GLU ASN VAL SEQRES 24 A 307 VAL GLY LEU GLN ARG VAL ALA GLU SEQRES 1 B 307 THR GLN GLU ASP VAL VAL VAL THR LEU SER HIS GLN GLY SEQRES 2 B 307 TYR VAL LYS TYR GLN PRO LEU SER GLU TYR GLU ALA GLN SEQRES 3 B 307 ARG ARG GLY GLY LYS GLY LYS SER ALA ALA ARG ILE LYS SEQRES 4 B 307 GLU GLU ASP PHE ILE ASP ARG LEU LEU VAL ALA ASN THR SEQRES 5 B 307 HIS ASP HIS ILE LEU CYS PHE SER SER ARG GLY ARG VAL SEQRES 6 B 307 TYR SER MET LYS VAL TYR GLN LEU PRO GLU ALA THR ARG SEQRES 7 B 307 GLY ALA ARG GLY ARG PRO ILE VAL ASN LEU LEU PRO LEU SEQRES 8 B 307 GLU GLN ASP GLU ARG ILE THR ALA ILE LEU PRO VAL THR SEQRES 9 B 307 GLU PHE GLU GLU GLY VAL LYS VAL PHE MET ALA THR ALA SEQRES 10 B 307 ASN GLY THR VAL LYS LYS THR VAL LEU THR GLU PHE ASN SEQRES 11 B 307 ARG LEU ARG THR ALA GLY LYS VAL ALA ILE LYS LEU VAL SEQRES 12 B 307 ASP GLY ASP GLU LEU ILE GLY VAL ASP LEU THR SER GLY SEQRES 13 B 307 GLU ASP GLU VAL MET LEU PHE SER ALA GLU GLY LYS VAL SEQRES 14 B 307 VAL ARG PHE LYS GLU SER SER VAL ARG ALA MET GLY CYS SEQRES 15 B 307 ASN THR THR GLY VAL ARG GLY ILE ARG LEU GLY GLU GLY SEQRES 16 B 307 ASP LYS VAL VAL SER LEU ILE VAL PRO ARG GLY ASP GLY SEQRES 17 B 307 ALA ILE LEU THR ALA THR GLN ASN GLY TYR GLY LYS ARG SEQRES 18 B 307 THR ALA VAL ALA GLU TYR PRO THR LYS SER ARG ALA THR SEQRES 19 B 307 LYS GLY VAL ILE SER ILE LYS VAL THR GLU ARG ASN GLY SEQRES 20 B 307 LEU VAL VAL GLY ALA VAL GLN VAL ASP ASP CYS ASP GLN SEQRES 21 B 307 ILE MET MET ILE THR ASP ALA GLY THR LEU VAL ARG THR SEQRES 22 B 307 ARG VAL SER GLU ILE SER ILE VAL GLY ARG ASN THR GLN SEQRES 23 B 307 GLY VAL ILE LEU ILE ARG THR ALA GLU ASP GLU ASN VAL SEQRES 24 B 307 VAL GLY LEU GLN ARG VAL ALA GLU FORMUL 3 HOH *154(H2 O) HELIX 1 1 TYR A 605 LEU A 607 5 3 HELIX 2 2 VAL A 620 LEU A 622 5 3 HELIX 3 3 THR A 661 ASN A 664 5 4 HELIX 4 4 SER A 709 VAL A 711 5 3 HELIX 5 5 ALA A 757 TYR A 761 5 5 HELIX 6 6 SER A 810 ILE A 812 5 3 HELIX 7 7 LEU B 554 ARG B 561 1 8 HELIX 8 8 TYR B 605 LEU B 607 5 3 HELIX 9 9 VAL B 620 LEU B 622 5 3 HELIX 10 10 THR B 661 ASN B 664 5 4 HELIX 11 11 SER B 709 VAL B 711 5 3 HELIX 12 12 ALA B 757 TYR B 761 5 5 HELIX 13 13 SER B 810 ILE B 812 5 3 SHEET 1 A 4 ILE A 578 ASN A 585 0 SHEET 2 A 4 ASP A 538 SER A 544 -1 N VAL A 541 O LEU A 582 SHEET 3 A 4 TYR A 548 PRO A 553 -1 O GLN A 552 N VAL A 540 SHEET 4 A 4 ARG A 617 PRO A 618 -1 O ARG A 617 N VAL A 549 SHEET 1 B 4 ILE A 631 VAL A 637 0 SHEET 2 B 4 HIS A 589 SER A 594 -1 N HIS A 589 O VAL A 637 SHEET 3 B 4 ARG A 598 LYS A 603 -1 O TYR A 600 N CYS A 592 SHEET 4 B 4 LYS A 671 VAL A 672 -1 O LYS A 671 N VAL A 599 SHEET 1 C 4 LEU A 682 THR A 688 0 SHEET 2 C 4 LYS A 645 THR A 650 -1 N PHE A 647 O ASP A 686 SHEET 3 C 4 THR A 654 VAL A 659 -1 O LYS A 656 N MET A 648 SHEET 4 C 4 VAL A 721 ARG A 722 -1 O VAL A 721 N VAL A 655 SHEET 1 D 4 VAL A 732 ILE A 736 0 SHEET 2 D 4 GLU A 693 SER A 698 -1 N MET A 695 O ILE A 736 SHEET 3 D 4 LYS A 702 LYS A 707 -1 O PHE A 706 N VAL A 694 SHEET 4 D 4 VAL A 771 ILE A 772 -1 O VAL A 771 N VAL A 703 SHEET 1 E 4 VAL A 783 VAL A 789 0 SHEET 2 E 4 ALA A 743 THR A 748 -1 N LEU A 745 O VAL A 787 SHEET 3 E 4 TYR A 752 THR A 756 -1 O THR A 756 N ILE A 744 SHEET 4 E 4 VAL A 822 ILE A 823 -1 O VAL A 822 N GLY A 753 SHEET 1 F 3 LEU A 804 ARG A 808 0 SHEET 2 F 3 GLN A 794 THR A 799 -1 N ILE A 795 O THR A 807 SHEET 3 F 3 VAL A 833 ARG A 838 -1 O VAL A 834 N ILE A 798 SHEET 1 G 4 ILE B 578 ASN B 585 0 SHEET 2 G 4 ASP B 538 SER B 544 -1 N VAL B 539 O ALA B 584 SHEET 3 G 4 TYR B 548 PRO B 553 -1 O GLN B 552 N VAL B 540 SHEET 4 G 4 ARG B 617 PRO B 618 -1 O ARG B 617 N VAL B 549 SHEET 1 H 4 ILE B 631 VAL B 637 0 SHEET 2 H 4 HIS B 589 SER B 594 -1 N PHE B 593 O THR B 632 SHEET 3 H 4 ARG B 598 LYS B 603 -1 O TYR B 600 N CYS B 592 SHEET 4 H 4 LYS B 671 VAL B 672 -1 O LYS B 671 N VAL B 599 SHEET 1 I 4 LEU B 682 THR B 688 0 SHEET 2 I 4 LYS B 645 THR B 650 -1 N PHE B 647 O ASP B 686 SHEET 3 I 4 THR B 654 VAL B 659 -1 O THR B 654 N THR B 650 SHEET 4 I 4 VAL B 721 ARG B 722 -1 O VAL B 721 N VAL B 655 SHEET 1 J 4 VAL B 732 ILE B 736 0 SHEET 2 J 4 GLU B 693 SER B 698 -1 N PHE B 697 O VAL B 733 SHEET 3 J 4 LYS B 702 LYS B 707 -1 O LYS B 702 N SER B 698 SHEET 4 J 4 VAL B 771 ILE B 772 -1 O VAL B 771 N VAL B 703 SHEET 1 K 4 VAL B 783 VAL B 789 0 SHEET 2 K 4 ALA B 743 THR B 748 -1 N ALA B 747 O VAL B 784 SHEET 3 K 4 TYR B 752 THR B 756 -1 O THR B 756 N ILE B 744 SHEET 4 K 4 VAL B 822 ILE B 823 -1 O VAL B 822 N GLY B 753 SHEET 1 L 3 LEU B 804 ARG B 808 0 SHEET 2 L 3 GLN B 794 THR B 799 -1 N MET B 797 O VAL B 805 SHEET 3 L 3 VAL B 833 ARG B 838 -1 O GLN B 837 N MET B 796 CRYST1 104.216 121.432 177.957 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009595 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005619 0.00000 MASTER 453 0 0 13 46 0 0 6 0 0 0 48 END