HEADER HYDROLASE 21-APR-05 1ZGG TITLE SOLUTION STRUCTURE OF A LOW MOLECULAR WEIGHT PROTEIN TITLE 2 TYROSINE PHOSPHATASE FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LOW MOLECULAR WEIGHT PROTEIN-TYROSINE- COMPND 3 PHOSPHATASE YWLE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ALPHA/BETA, FOUR-STRANDED PARALLEL BETA SHEET, STRUCTURAL KEYWDS 2 GENOMICS, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.XU,B.XIA,C.JIN REVDAT 2 24-FEB-09 1ZGG 1 VERSN REVDAT 1 28-MAR-06 1ZGG 0 JRNL AUTH H.XU,B.XIA,C.JIN JRNL TITL SOLUTION STRUCTURE OF A LOW-MOLECULAR-WEIGHT JRNL TITL 2 PROTEIN TYROSINE PHOSPHATASE FROM BACILLUS SUBTILIS JRNL REF J.BACTERIOL. V. 188 1509 2006 JRNL REFN ISSN 0021-9193 JRNL PMID 16452434 JRNL DOI 10.1128/JB.188.4.1509-1517.2006 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7.0 REMARK 3 AUTHORS : DAVID CASE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZGG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB032691. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.1M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM LMW-PTPASE U-15N,13C; REMARK 210 50MM SODIUM CHLORIDE 50MM TRIS REMARK 210 BUFFER; 30MM DTT; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 2.1, REMARK 210 NMRVIEW 5, CYANA 1.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG A 35 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 8 ARG A 27 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 19 ARG A 131 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 10 -57.56 62.82 REMARK 500 1 ARG A 13 -28.23 -163.28 REMARK 500 1 PRO A 43 6.25 -59.84 REMARK 500 1 TYR A 98 21.77 -75.82 REMARK 500 1 ASP A 148 26.21 -156.56 REMARK 500 1 ARG A 149 15.76 43.79 REMARK 500 2 ASN A 10 -65.11 57.77 REMARK 500 2 ARG A 13 -26.73 -162.43 REMARK 500 2 PRO A 43 8.87 -58.92 REMARK 500 2 ASN A 44 10.91 -140.01 REMARK 500 2 ALA A 47 -155.85 42.99 REMARK 500 2 ASN A 63 21.55 -153.48 REMARK 500 2 TYR A 98 25.09 -75.61 REMARK 500 2 VAL A 109 -57.64 -123.11 REMARK 500 2 ARG A 149 74.74 45.11 REMARK 500 3 ASN A 10 -85.71 33.52 REMARK 500 3 ARG A 13 -28.17 -162.59 REMARK 500 3 PHE A 40 32.42 -141.72 REMARK 500 3 PRO A 43 -0.16 -55.06 REMARK 500 3 ARG A 97 44.31 -66.60 REMARK 500 3 ASP A 148 11.43 -140.43 REMARK 500 4 ASN A 10 -61.28 63.34 REMARK 500 4 ARG A 13 -21.77 -162.53 REMARK 500 4 PRO A 43 13.80 -57.83 REMARK 500 4 ALA A 47 -153.37 41.93 REMARK 500 4 VAL A 109 -50.02 -120.52 REMARK 500 5 ARG A 13 -3.09 -160.60 REMARK 500 5 PRO A 43 8.97 -58.59 REMARK 500 5 ASN A 44 11.97 -140.64 REMARK 500 5 ARG A 149 90.84 -69.83 REMARK 500 6 ARG A 13 -23.71 85.84 REMARK 500 6 PRO A 43 3.46 -57.60 REMARK 500 6 ASN A 44 18.89 -141.79 REMARK 500 6 TYR A 98 23.27 -72.23 REMARK 500 7 ASN A 10 -65.38 -2.03 REMARK 500 7 ARG A 13 -31.22 -159.00 REMARK 500 7 PRO A 43 12.13 -58.61 REMARK 500 7 ALA A 47 -163.00 42.87 REMARK 500 7 ALA A 61 73.39 54.44 REMARK 500 7 TYR A 98 21.29 -71.97 REMARK 500 7 ASP A 148 -154.34 -122.06 REMARK 500 8 ASN A 10 -53.84 61.15 REMARK 500 8 ARG A 13 -27.53 -161.84 REMARK 500 8 PRO A 43 5.97 -61.30 REMARK 500 8 ASN A 44 21.15 -143.25 REMARK 500 8 SER A 66 171.84 -59.78 REMARK 500 9 ASN A 10 -55.84 62.51 REMARK 500 9 ARG A 13 -28.15 -162.15 REMARK 500 9 PRO A 43 2.53 -58.91 REMARK 500 9 ASN A 44 19.59 -141.59 REMARK 500 9 ASN A 63 88.32 29.26 REMARK 500 9 ARG A 149 3.31 -62.46 REMARK 500 10 ASN A 10 -63.03 60.69 REMARK 500 10 ARG A 13 -29.35 -162.78 REMARK 500 10 PRO A 43 2.01 -56.95 REMARK 500 10 ALA A 47 -154.16 41.62 REMARK 500 10 LEU A 62 -57.29 -27.84 REMARK 500 10 ASN A 63 84.45 25.91 REMARK 500 11 ASN A 10 -54.89 60.20 REMARK 500 11 ARG A 13 -27.39 -160.02 REMARK 500 11 PHE A 40 39.44 -144.09 REMARK 500 11 PRO A 43 8.98 -57.33 REMARK 500 11 ALA A 47 -153.36 42.47 REMARK 500 11 ARG A 97 47.04 -74.84 REMARK 500 11 TYR A 98 16.86 -66.27 REMARK 500 12 ASN A 10 -78.08 34.70 REMARK 500 12 ARG A 13 -23.87 -162.99 REMARK 500 12 PHE A 40 38.04 -142.03 REMARK 500 12 PRO A 43 2.29 -56.41 REMARK 500 12 ASN A 44 19.23 -140.03 REMARK 500 12 ASN A 63 29.82 -154.43 REMARK 500 12 TYR A 98 28.76 -73.64 REMARK 500 13 ASN A 10 -47.10 59.73 REMARK 500 13 ARG A 13 -25.77 -167.92 REMARK 500 13 ARG A 97 36.10 -64.81 REMARK 500 13 TYR A 98 5.00 -64.87 REMARK 500 14 ASN A 10 -62.72 61.18 REMARK 500 14 ARG A 13 -19.43 -162.77 REMARK 500 14 PRO A 43 8.54 -60.34 REMARK 500 14 ASN A 44 17.42 -145.99 REMARK 500 14 ALA A 47 -153.68 40.15 REMARK 500 14 ASN A 63 18.71 -155.10 REMARK 500 14 TYR A 98 3.36 -68.84 REMARK 500 14 VAL A 109 -57.05 -121.29 REMARK 500 14 ARG A 149 82.56 -68.66 REMARK 500 15 ARG A 13 -23.43 -164.62 REMARK 500 15 PRO A 43 5.11 -57.34 REMARK 500 15 ASN A 63 31.73 -153.31 REMARK 500 15 ARG A 149 11.21 -67.31 REMARK 500 16 ASN A 10 -58.75 64.40 REMARK 500 16 ARG A 13 -19.53 -164.53 REMARK 500 16 PRO A 43 0.26 -58.82 REMARK 500 16 ASN A 44 25.48 -141.42 REMARK 500 16 ASN A 63 90.15 27.29 REMARK 500 16 ARG A 97 49.42 -68.30 REMARK 500 16 VAL A 109 -52.94 -123.34 REMARK 500 16 ASP A 148 -8.80 -145.21 REMARK 500 17 ASN A 10 -43.36 57.88 REMARK 500 17 ARG A 13 -15.72 -164.28 REMARK 500 17 PRO A 43 1.55 -57.85 REMARK 500 17 ASN A 44 69.52 -150.67 REMARK 500 17 ALA A 47 -152.23 37.56 REMARK 500 17 ARG A 97 27.08 -67.07 REMARK 500 17 TYR A 98 32.18 -69.46 REMARK 500 17 VAL A 109 -60.06 -122.23 REMARK 500 17 LEU A 117 96.93 54.30 REMARK 500 17 ASP A 148 107.66 -165.56 REMARK 500 18 ARG A 13 -26.22 75.55 REMARK 500 18 PRO A 43 3.35 -59.15 REMARK 500 18 ASN A 44 22.53 -142.13 REMARK 500 18 TYR A 98 22.36 -74.69 REMARK 500 18 ASP A 148 21.75 -148.33 REMARK 500 18 ARG A 149 -18.87 64.87 REMARK 500 19 ASN A 10 -57.72 62.71 REMARK 500 19 ARG A 13 -27.67 -161.58 REMARK 500 19 PRO A 43 -3.18 -59.03 REMARK 500 19 LEU A 62 -61.21 -26.45 REMARK 500 19 ASN A 63 91.77 33.96 REMARK 500 19 VAL A 116 -77.66 -96.26 REMARK 500 20 ASN A 10 -55.35 65.08 REMARK 500 20 ARG A 13 -23.41 -162.26 REMARK 500 20 HIS A 59 51.19 72.15 REMARK 500 20 ARG A 97 47.61 -75.53 REMARK 500 20 TYR A 98 20.04 -65.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 32 ASN A 33 1 149.53 REMARK 500 ASP A 148 ARG A 149 1 -148.77 REMARK 500 VAL A 32 ASN A 33 7 149.30 REMARK 500 VAL A 32 ASN A 33 11 148.68 REMARK 500 ASN A 44 GLY A 45 13 145.44 REMARK 500 VAL A 32 ASN A 33 14 149.01 REMARK 500 VAL A 32 ASN A 33 15 148.74 REMARK 500 ARG A 97 TYR A 98 16 149.99 REMARK 500 VAL A 32 ASN A 33 18 147.56 REMARK 500 ASN A 44 GLY A 45 20 149.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 ARG A 149 0.15 SIDE_CHAIN REMARK 500 13 ARG A 13 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1ZGG A 1 150 UNP P39155 YWLE_BACSU 1 150 SEQRES 1 A 150 MET ASP ILE ILE PHE VAL CYS THR GLY ASN THR CYS ARG SEQRES 2 A 150 SER PRO MET ALA GLU ALA LEU PHE LYS SER ILE ALA GLU SEQRES 3 A 150 ARG GLU GLY LEU ASN VAL ASN VAL ARG SER ALA GLY VAL SEQRES 4 A 150 PHE ALA SER PRO ASN GLY LYS ALA THR PRO HIS ALA VAL SEQRES 5 A 150 GLU ALA LEU PHE GLU LYS HIS ILE ALA LEU ASN HIS VAL SEQRES 6 A 150 SER SER PRO LEU THR GLU GLU LEU MET GLU SER ALA ASP SEQRES 7 A 150 LEU VAL LEU ALA MET THR HIS GLN HIS LYS GLN ILE ILE SEQRES 8 A 150 ALA SER GLN PHE GLY ARG TYR ARG ASP LYS VAL PHE THR SEQRES 9 A 150 LEU LYS GLU TYR VAL THR GLY SER HIS GLY ASP VAL LEU SEQRES 10 A 150 ASP PRO PHE GLY GLY SER ILE ASP ILE TYR LYS GLN THR SEQRES 11 A 150 ARG ASP GLU LEU GLU GLU LEU LEU ARG GLN LEU ALA LYS SEQRES 12 A 150 GLN LEU LYS LYS ASP ARG ARG HELIX 1 1 ARG A 13 GLY A 29 1 17 HELIX 2 2 HIS A 50 LYS A 58 1 9 HELIX 3 3 THR A 70 ALA A 77 1 8 HELIX 4 4 THR A 84 GLY A 96 1 13 HELIX 5 5 TYR A 98 ASP A 100 5 3 HELIX 6 6 LYS A 106 GLY A 111 1 6 HELIX 7 7 SER A 123 LYS A 146 1 24 SHEET 1 A 4 ASN A 33 ALA A 37 0 SHEET 2 A 4 ASP A 2 VAL A 6 1 N ILE A 3 O ARG A 35 SHEET 3 A 4 LEU A 79 ALA A 82 1 O LEU A 81 N ILE A 4 SHEET 4 A 4 VAL A 102 THR A 104 1 O PHE A 103 N ALA A 82 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 253 0 0 7 4 0 0 6 0 0 0 12 END