HEADER STRUCTURAL PROTEIN 07-APR-05 1ZB4 TITLE N-TERMINAL DOMAIN OF HMAL10. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L10E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN OF HMAL10; COMPND 5 SYNONYM: RIBOSOMAL PROTEIN L10, ACIDIC RIBOSOMAL PROTEIN COMPND 6 P0 HOMOLOG, L10E, HMAL10 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOARCULA MARISMORTUI; SOURCE 3 ORGANISM_COMMON: HALOBACTERIUM MARISMORTUI KEYWDS THEORETICAL MODEL, STRUCTURAL PROTEIN EXPDTA THEORETICAL MODEL AUTHOR M.DIACONU,U.KOTHE,F.SCHLUENZEN,N.FISCHER,J.M.HARMS, AUTHOR 2 A.G.TONEVITSKY,H.STARK,M.V.RODNINA,M.C.WAHL REVDAT 1 12-JUL-05 1ZB4 0 JRNL AUTH M.DIACONU,U.KOTHE,F.SCHLUENZEN,N.FISCHER,J.M.HARMS, JRNL AUTH 2 A.G.TONEVITSKY,H.STARK,M.V.RODNINA,M.C.WAHL JRNL TITL STRUCTURAL BASIS FOR THE FUNCTION OF THE RIBOSOMAL JRNL TITL 2 L7/12 STALK IN FACTOR BINDING AND GTPASE JRNL TITL 3 ACTIVATION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 121 991 2005 JRNL REFN ASTM CELLB5 US ISSN 0092-8674 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZB4 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-2005. REMARK 100 THE RCSB ID CODE IS RCSB032518. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: AN EXPERIMENTAL DENSITY MODIFICATION SCHEME ON REMARK 220 COORDINATES AND STRUCTURE FACTORS OF PDB ENTRY 1S72 WAS REMARK 220 USED AS A TEST CASE. THE DERIVED DENSITY MAPS WERE USED REMARK 220 TO CREATE A MORE COMPLETE MODEL OF ONE OF THE VERY REMARK 220 INCOMPLETE PROTEINS OF 1S72, NAMELY CHAIN G, HMAL10. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 27 N ILE A 27 CA 0.052 REMARK 500 ASP A 72 N ASP A 72 CA 0.035 REMARK 500 ASP A 72 CA ASP A 72 C -0.030 REMARK 500 GLY A 93 CA GLY A 93 C 0.025 REMARK 500 THR A 94 N THR A 94 CA 0.036 REMARK 500 GLY A 93 C THR A 94 N 0.046 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 27 N - CA - C ANGL. DEV. = 7.5 DEGREES REMARK 500 ILE A 27 C - N - CA ANGL. DEV. = 5.1 DEGREES REMARK 500 GLU A 28 N - CA - C ANGL. DEV. = 6.3 DEGREES REMARK 500 GLU A 28 C - N - CA ANGL. DEV. = 6.1 DEGREES REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S72 RELATED DB: PDB REMARK 900 50S RIBOSOMAL SUBUNIT FROM H.MARISMORTUI. DBREF 1ZB4 A 1 130 UNP P15825 RLA0_HALMA 1 130 SEQRES 1 A 130 MET SER ALA GLU SER GLU ARG LYS THR GLU THR ILE PRO SEQRES 2 A 130 GLU TRP LYS GLN GLU GLU VAL ASP ALA ILE VAL GLU MET SEQRES 3 A 130 ILE GLU SER TYR GLU SER VAL GLY VAL VAL ASN ILE ALA SEQRES 4 A 130 GLY ILE PRO SER ARG GLN LEU GLN ASP MET ARG ARG ASP SEQRES 5 A 130 LEU HIS GLY THR ALA GLU LEU ARG VAL SER ARG ASN THR SEQRES 6 A 130 LEU LEU GLU ARG ALA LEU ASP ASP VAL ASP ASP GLY LEU SEQRES 7 A 130 GLU ASP LEU ASN GLY TYR ILE THR GLY GLN VAL GLY LEU SEQRES 8 A 130 ILE GLY THR ASP ASP ASN PRO PHE SER LEU PHE GLN GLU SEQRES 9 A 130 LEU GLU ALA SER LYS THR PRO ALA PRO ILE GLY ALA GLY SEQRES 10 A 130 GLU VAL ALA PRO ASN ASP ILE VAL ILE PRO GLU GLY ASP HELIX 1 1 PRO A 13 SER A 29 1 17 HELIX 2 2 ARG A 63 ASP A 72 1 10 HELIX 3 3 ASP A 80 ILE A 85 1 6 HELIX 4 4 LEU A 101 GLU A 106 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 85 0 0 4 0 0 0 6 0 0 0 10 END