HEADER HYDROLASE 01-APR-05 1Z9G TITLE CRYSTAL STRUCTURE ANALYSIS OF THERMOLYSIN COMPLEXED WITH THE INHIBITOR TITLE 2 (R)-RETRO-THIORPHAN CAVEAT 1Z9G INCORRECT CHIRALITY AT RESIDUES 224,278,316 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS ENZYME-INHIBITOR COMPLEX; ZINC ENDOPEPTIDASE; GAMMA TURN; KEYWDS 2 THERMOSTABLE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.RODERICK,M.C.FOURNIE-ZALUSKI,B.P.ROQUES,B.W.MATTHEWS REVDAT 3 11-OCT-17 1Z9G 1 REMARK REVDAT 2 24-FEB-09 1Z9G 1 VERSN REVDAT 1 19-APR-05 1Z9G 0 JRNL AUTH S.L.RODERICK,M.C.FOURNIE-ZALUSKI,B.P.ROQUES,B.W.MATTHEWS JRNL TITL THIORPHAN AND RETRO-THIORPHAN DISPLAY EQUIVALENT JRNL TITL 2 INTERACTIONS WHEN BOUND TO CRYSTALLINE THERMOLYSIN JRNL REF BIOCHEMISTRY V. 28 1493 1989 JRNL REFN ISSN 0006-2960 JRNL PMID 2719912 JRNL DOI 10.1021/BI00430A011 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.0 REMARK 3 NUMBER OF REFLECTIONS : 27376 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1870 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 27376 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 15.500 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.022 ; NULL ; 2508 REMARK 3 BOND ANGLES (DEGREES) : 3.250 ; NULL ; 3405 REMARK 3 TORSION ANGLES (DEGREES) : 16.726; NULL ; 1440 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.014 ; NULL ; 67 REMARK 3 GENERAL PLANES (A) : 0.017 ; NULL ; 376 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 3.992 ; NULL ; 2491 REMARK 3 NON-BONDED CONTACTS (A) : 0.061 ; NULL ; 14 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : 3 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT VERSION 1.0 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : ISOTROPIC REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 40 CYCLES OF CONJUGATE GRADIENT REMARK 3 REFINEMENT REMARK 4 REMARK 4 1Z9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 1987 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-21 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : GRAPHITE MONOCHROMATOR, REMARK 200 COLLIMATING SLITS REMARK 200 REMARK 200 DETECTOR TYPE : FILM REMARK 200 DETECTOR MANUFACTURER : KODAK REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ROTAVATA, OSCTST REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27574 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.0 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.03200 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: PDB ENTRY 3TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS ACETATE, CALCIUM ACETATE, DMSO, REMARK 280 PH 7.2, DILUTION WITH H2O, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 110.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 110.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 66.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 22.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ENZYME ACTS AS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG E 269 OD2 ASP E 294 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 418 O HOH E 418 12565 1.40 REMARK 500 O HOH E 485 O HOH E 485 7555 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU E 119 CD GLU E 119 OE2 0.092 REMARK 500 GLU E 160 CD GLU E 160 OE1 -0.076 REMARK 500 GLU E 166 CD GLU E 166 OE1 -0.070 REMARK 500 GLU E 166 CD GLU E 166 OE2 0.080 REMARK 500 GLU E 187 CD GLU E 187 OE2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR E 6 OG1 - CB - CG2 ANGL. DEV. = -14.5 DEGREES REMARK 500 ASP E 16 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP E 16 CB - CG - OD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 THR E 26 CA - CB - CG2 ANGL. DEV. = 9.5 DEGREES REMARK 500 TYR E 28 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG E 35 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP E 57 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP E 59 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 GLN E 61 CA - CB - CG ANGL. DEV. = -17.4 DEGREES REMARK 500 ASP E 67 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 TYR E 93 CB - CG - CD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG E 101 CG - CD - NE ANGL. DEV. = -21.0 DEGREES REMARK 500 ARG E 101 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG E 101 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLU E 143 CG - CD - OE1 ANGL. DEV. = 14.4 DEGREES REMARK 500 ASP E 185 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 GLY E 196 C - N - CA ANGL. DEV. = -13.1 DEGREES REMARK 500 ILE E 197 CA - CB - CG1 ANGL. DEV. = 19.1 DEGREES REMARK 500 ASP E 200 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP E 200 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 LEU E 202 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ASP E 207 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP E 207 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 TYR E 211 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR E 211 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 TYR E 217 CG - CD1 - CE1 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR E 217 CG - CD2 - CE2 ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR E 217 CD1 - CE1 - CZ ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG E 220 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG E 220 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG E 220 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP E 226 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP E 226 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG E 260 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG E 260 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP E 261 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG E 269 CD - NE - CZ ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG E 269 NE - CZ - NH1 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG E 269 NE - CZ - NH2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TYR E 274 CB - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TYR E 274 CB - CG - CD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 THR E 278 OG1 - CB - CG2 ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG E 285 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG E 285 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP E 311 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP E 311 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 25 80.45 -158.86 REMARK 500 THR E 26 -54.71 78.04 REMARK 500 PHE E 62 64.79 -116.57 REMARK 500 SER E 92 -175.77 56.39 REMARK 500 SER E 107 -159.10 57.89 REMARK 500 ASN E 111 50.64 -94.89 REMARK 500 GLN E 128 -42.58 -132.39 REMARK 500 THR E 152 -100.12 -108.11 REMARK 500 TYR E 157 48.51 -82.59 REMARK 500 ASN E 159 -140.33 58.31 REMARK 500 THR E 194 76.37 32.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD1 REMARK 620 2 ASP E 185 OD2 163.6 REMARK 620 3 GLU E 187 O 88.2 77.0 REMARK 620 4 GLU E 190 OE1 81.0 88.6 77.0 REMARK 620 5 GLU E 190 OE2 97.9 86.3 129.6 55.1 REMARK 620 6 GLU E 177 OE1 76.7 119.6 144.5 130.3 84.7 REMARK 620 7 GLU E 177 OE2 122.5 73.8 144.0 122.2 68.9 47.4 REMARK 620 8 HOH E 346 O 101.3 81.4 72.9 149.7 150.9 78.8 82.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 190 OE2 REMARK 620 2 ASP E 185 OD1 78.0 REMARK 620 3 HOH E 353 O 95.8 173.7 REMARK 620 4 HOH E 475 O 91.7 100.7 80.6 REMARK 620 5 GLU E 177 OE2 82.7 86.6 91.4 169.8 REMARK 620 6 ASN E 183 O 170.5 93.2 93.0 93.4 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 54.3 REMARK 620 3 ASP E 59 OD1 125.6 71.8 REMARK 620 4 HOH E 419 O 80.9 133.7 153.5 REMARK 620 5 GLN E 61 O 98.7 91.7 89.5 83.3 REMARK 620 6 HOH E 482 O 158.1 144.7 73.2 81.6 92.1 REMARK 620 7 HOH E 503 O 83.2 87.6 87.6 99.2 177.1 86.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR E 194 OG1 REMARK 620 2 TYR E 193 O 78.4 REMARK 620 3 HOH E 354 O 128.1 82.0 REMARK 620 4 HOH E 480 O 145.8 83.3 76.6 REMARK 620 5 ILE E 197 O 100.9 157.2 114.4 85.2 REMARK 620 6 ASP E 200 OD1 78.2 127.0 76.5 135.1 74.2 REMARK 620 7 THR E 194 O 61.1 75.7 153.4 86.6 84.0 128.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1005 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 102.0 REMARK 620 3 GLU E 166 OE1 126.8 90.9 REMARK 620 4 RRT E1006 SG 119.1 114.1 100.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RRT E 1006 DBREF 1Z9G E 1 316 UNP P00800 THER_BACTH 233 548 SEQADV 1Z9G ASP E 37 UNP P00800 ASN 269 CONFLICT SEQADV 1Z9G GLU E 119 UNP P00800 GLN 351 CONFLICT SEQADV 1Z9G GLU E 177 UNP P00800 LYS 409 SEE REMARK 999 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET CA E1001 1 HET CA E1002 1 HET CA E1003 1 HET CA E1004 1 HET ZN E1005 1 HET RRT E1006 17 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM RRT (R)-RETRO-THIORPHAN HETSYN RRT 3-{[(1R)-1-BENZYL-2-SULFANYLETHYL]AMINO}-3-OXOPROPANOIC HETSYN 2 RRT ACID FORMUL 2 CA 4(CA 2+) FORMUL 6 ZN ZN 2+ FORMUL 7 RRT C12 H15 N O3 S FORMUL 8 HOH *161(H2 O) HELIX 1 1 ASP E 67 ASN E 89 1 23 HELIX 2 2 PRO E 132 GLY E 135 5 4 HELIX 3 3 GLY E 136 THR E 152 1 17 HELIX 4 4 GLN E 158 ASN E 181 1 24 HELIX 5 5 ASP E 207 GLY E 212 5 6 HELIX 6 6 HIS E 216 ARG E 220 5 5 HELIX 7 7 GLN E 225 VAL E 230 1 6 HELIX 8 8 ASN E 233 GLN E 246 1 14 HELIX 9 9 GLY E 259 TYR E 274 1 16 HELIX 10 10 ASN E 280 GLY E 297 1 18 HELIX 11 11 SER E 300 VAL E 313 1 14 SHEET 1 A 5 ALA E 56 ASP E 57 0 SHEET 2 A 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 A 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 A 5 THR E 4 ARG E 11 -1 N GLY E 8 O ILE E 20 SHEET 5 A 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 B 3 GLN E 31 ASP E 32 0 SHEET 2 B 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 B 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 C 5 GLN E 31 ASP E 32 0 SHEET 2 C 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 C 5 ILE E 100 VAL E 104 1 O SER E 102 N TYR E 42 SHEET 4 C 5 MET E 120 TYR E 122 1 O TYR E 122 N SER E 103 SHEET 5 C 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 D 2 GLU E 187 ILE E 188 0 SHEET 2 D 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 E 2 GLY E 247 HIS E 250 0 SHEET 2 E 2 VAL E 253 VAL E 256 -1 O VAL E 253 N HIS E 250 LINK CA CA E1001 OD1 ASP E 138 1555 1555 2.38 LINK CA CA E1001 OD2 ASP E 185 1555 1555 2.45 LINK CA CA E1001 O GLU E 187 1555 1555 2.29 LINK CA CA E1001 OE1 GLU E 190 1555 1555 2.41 LINK CA CA E1001 OE2 GLU E 190 1555 1555 2.42 LINK CA CA E1001 OE1 GLU E 177 1555 1555 2.60 LINK CA CA E1001 OE2 GLU E 177 1555 1555 2.88 LINK CA CA E1001 O HOH E 346 1555 1555 2.65 LINK CA CA E1002 OE2 GLU E 190 1555 1555 2.33 LINK CA CA E1002 OD1 ASP E 185 1555 1555 2.54 LINK CA CA E1002 O HOH E 353 1555 1555 2.43 LINK CA CA E1002 O HOH E 475 1555 1555 1.81 LINK CA CA E1002 OE2 GLU E 177 1555 1555 2.24 LINK CA CA E1002 O ASN E 183 1555 1555 2.49 LINK CA CA E1003 OD1 ASP E 57 1555 1555 2.13 LINK CA CA E1003 OD2 ASP E 57 1555 1555 2.46 LINK CA CA E1003 OD1 ASP E 59 1555 1555 2.44 LINK CA CA E1003 O HOH E 419 1555 1555 2.51 LINK CA CA E1003 O GLN E 61 1555 1555 2.28 LINK CA CA E1003 O HOH E 482 1555 1555 2.24 LINK CA CA E1003 O HOH E 503 1555 1555 2.41 LINK CA CA E1004 OG1 THR E 194 1555 1555 2.42 LINK CA CA E1004 O TYR E 193 1555 1555 2.55 LINK CA CA E1004 O HOH E 354 1555 1555 2.54 LINK CA CA E1004 O HOH E 480 1555 1555 1.93 LINK CA CA E1004 O ILE E 197 1555 1555 2.25 LINK CA CA E1004 OD1 ASP E 200 1555 1555 2.28 LINK CA CA E1004 O THR E 194 1555 1555 2.48 LINK ZN ZN E1005 NE2 HIS E 142 1555 1555 2.06 LINK ZN ZN E1005 NE2 HIS E 146 1555 1555 2.02 LINK ZN ZN E1005 OE1 GLU E 166 1555 1555 2.17 LINK ZN ZN E1005 SG RRT E1006 1555 1555 2.32 CISPEP 1 LEU E 50 PRO E 51 0 1.17 SITE 1 AC1 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC1 6 GLU E 190 HOH E 346 SITE 1 AC2 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC2 6 HOH E 353 HOH E 475 SITE 1 AC3 6 ASP E 57 ASP E 59 GLN E 61 HOH E 419 SITE 2 AC3 6 HOH E 482 HOH E 503 SITE 1 AC4 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC4 6 HOH E 354 HOH E 480 SITE 1 AC5 5 HIS E 142 HIS E 146 TYR E 157 GLU E 166 SITE 2 AC5 5 RRT E1006 SITE 1 AC6 12 ASN E 112 ALA E 113 VAL E 139 GLU E 143 SITE 2 AC6 12 HIS E 146 TYR E 157 GLU E 166 ILE E 188 SITE 3 AC6 12 LEU E 202 ARG E 203 HIS E 231 ZN E1005 CRYST1 94.000 94.000 132.000 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010638 0.006142 0.000000 0.00000 SCALE2 0.000000 0.012284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007576 0.00000 MASTER 439 0 6 11 17 0 13 6 0 0 0 25 END