HEADER PROTEIN BINDING 30-MAR-05 1Z86 TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF ALPHA-SYNTROPHIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1-SYNTROPHIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: ALPHA-SYNTROPHIN, 59 KDA DYSTROPHIN-ASSOCIATED COMPND 6 PROTEIN A1, ACIDIC COMPONENT 1, SYNTROPHIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32A(MODIFIED VERSION) KEYWDS TWO ALPHA HELIX, SIX BETA STRANDS, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.YAN,W.XU,W.WEN,J.F.LONG,M.E.ADAMS,S.C.FROEHNER,M.ZHANG REVDAT 2 24-FEB-09 1Z86 1 VERSN REVDAT 1 24-JAN-06 1Z86 0 JRNL AUTH J.YAN,W.WEN,W.XU,J.F.LONG,M.E.ADAMS,S.C.FROEHNER, JRNL AUTH 2 M.ZHANG JRNL TITL STRUCTURE OF THE SPLIT PH DOMAIN AND DISTINCT JRNL TITL 2 LIPID-BINDING PROPERTIES OF THE PH-PDZ SUPRAMODULE JRNL TITL 3 OF ALPHA-SYNTROPHIN JRNL REF EMBO J. V. 24 3985 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16252003 JRNL DOI 10.1038/SJ.EMBOJ.7600858 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z86 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB032419. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PDZ DOMAIN OF ALPHA1- REMARK 210 SYNTROPHIN U-15N, 13C; 100MM REMARK 210 POTASSIUM PHOSPHATE; 90% H2O, REMARK 210 10% D2O; 1MM PDZ DOMAIN OF REMARK 210 ALPHA1-SYNTROPHIN U-15N; 100MM REMARK 210 POTASSIUM PHOSPHATE; 90% H2O, REMARK 210 10% D2O; 1MM PDZ DOMAIN OF REMARK 210 ALPHA1-SYNTROPHIN U-15N, 13C; REMARK 210 100MM POTASSIUM PHOSPHATE; REMARK 210 99.9% D2O; 1MM PDZ DOMAIN OF REMARK 210 ALPHA1-SYNTROPHIN; 100MM REMARK 210 POTASSIUM PHOSPHATE; 99.9% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCO,HNCA, HN(CO)CA, HNCACB, REMARK 210 CBCA(CO)NH, 3D_15N-SEPARATED_ REMARK 210 NOESY, 3D_13C-SEPARATED_NOESY, REMARK 210 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 87 -76.88 -137.75 REMARK 500 1 ALA A 89 -64.33 -175.72 REMARK 500 1 LYS A 110 89.74 -172.43 REMARK 500 1 ALA A 122 61.76 -154.95 REMARK 500 1 LEU A 123 97.64 -173.21 REMARK 500 1 SER A 139 59.59 -140.98 REMARK 500 1 THR A 141 160.53 -37.63 REMARK 500 1 LYS A 151 58.16 -102.64 REMARK 500 1 LYS A 154 -138.84 60.29 REMARK 500 2 LEU A 92 -178.04 61.02 REMARK 500 2 LYS A 103 30.46 70.03 REMARK 500 2 LYS A 110 89.86 -171.17 REMARK 500 2 ILE A 129 88.61 -69.98 REMARK 500 2 THR A 141 163.15 -39.73 REMARK 500 2 GLU A 155 144.75 -170.34 REMARK 500 2 LYS A 164 -78.37 65.35 REMARK 500 3 LEU A 92 -75.77 -79.75 REMARK 500 3 LYS A 110 88.28 -165.87 REMARK 500 3 GLU A 121 29.64 46.84 REMARK 500 3 LEU A 123 105.42 -172.17 REMARK 500 3 THR A 141 161.91 -39.44 REMARK 500 3 LYS A 164 -168.59 45.81 REMARK 500 4 ASP A 88 73.56 -161.99 REMARK 500 4 ALA A 89 94.30 59.86 REMARK 500 4 LEU A 92 -172.74 60.84 REMARK 500 4 SER A 109 -12.26 -140.37 REMARK 500 4 LYS A 110 94.07 -176.05 REMARK 500 4 LEU A 123 70.38 -174.36 REMARK 500 4 THR A 141 161.19 -38.58 REMARK 500 4 LYS A 151 79.99 -119.33 REMARK 500 4 LYS A 154 -135.89 60.98 REMARK 500 4 LYS A 164 -81.31 61.34 REMARK 500 5 ALA A 87 -75.67 -86.25 REMARK 500 5 ASP A 88 -56.15 -176.77 REMARK 500 5 LYS A 110 91.34 -173.47 REMARK 500 5 ALA A 122 59.52 -148.43 REMARK 500 5 LEU A 123 98.43 -178.08 REMARK 500 5 THR A 141 163.02 -39.87 REMARK 500 5 LYS A 154 -7.33 77.74 REMARK 500 5 GLU A 155 111.23 -170.45 REMARK 500 5 TYR A 162 85.05 -69.87 REMARK 500 5 LYS A 164 75.39 40.52 REMARK 500 6 LYS A 110 94.02 -175.79 REMARK 500 6 LEU A 123 91.44 -176.58 REMARK 500 6 SER A 139 59.32 -140.31 REMARK 500 6 THR A 141 161.36 -38.66 REMARK 500 6 GLU A 155 117.44 -170.08 REMARK 500 6 LYS A 164 163.20 61.33 REMARK 500 7 LYS A 86 -164.21 -58.18 REMARK 500 7 LYS A 110 90.89 -173.84 REMARK 500 7 LEU A 123 98.17 -175.72 REMARK 500 7 ASP A 136 107.69 -59.88 REMARK 500 7 THR A 141 164.06 -39.14 REMARK 500 7 LYS A 154 -129.66 61.64 REMARK 500 7 LYS A 164 161.22 59.22 REMARK 500 8 LYS A 110 90.57 -169.57 REMARK 500 8 LEU A 123 94.93 -172.86 REMARK 500 8 THR A 141 158.11 -36.99 REMARK 500 8 LYS A 154 -88.81 59.80 REMARK 500 9 ALA A 87 -47.22 -151.74 REMARK 500 9 LYS A 110 91.23 -174.01 REMARK 500 9 ALA A 122 52.12 -140.83 REMARK 500 9 LEU A 123 90.76 -177.51 REMARK 500 9 THR A 141 148.97 -32.95 REMARK 500 9 LYS A 154 -130.72 62.38 REMARK 500 9 TYR A 162 92.39 -69.98 REMARK 500 9 LYS A 164 166.21 61.24 REMARK 500 10 ASP A 88 -79.15 64.04 REMARK 500 10 LYS A 110 92.49 -176.21 REMARK 500 10 LEU A 115 -176.66 -65.43 REMARK 500 10 ALA A 122 57.23 -148.98 REMARK 500 10 LEU A 123 93.06 -179.67 REMARK 500 10 THR A 141 162.53 -40.08 REMARK 500 10 LYS A 154 31.27 -98.50 REMARK 500 10 TYR A 162 93.71 -69.90 REMARK 500 11 LYS A 110 89.73 -172.69 REMARK 500 11 ALA A 122 60.19 -153.56 REMARK 500 11 LEU A 123 109.98 -178.78 REMARK 500 11 THR A 141 162.33 -39.02 REMARK 500 11 LYS A 151 77.53 -112.70 REMARK 500 11 MET A 163 28.70 -148.38 REMARK 500 12 LYS A 86 72.09 -109.65 REMARK 500 12 ALA A 89 100.56 -58.69 REMARK 500 12 LEU A 92 -170.45 59.78 REMARK 500 12 SER A 109 -0.52 -140.16 REMARK 500 12 LYS A 110 87.28 -164.75 REMARK 500 12 GLU A 121 28.45 48.50 REMARK 500 12 LEU A 123 88.09 -177.28 REMARK 500 12 THR A 141 161.86 -39.10 REMARK 500 12 LYS A 151 41.29 -104.56 REMARK 500 12 LYS A 154 -125.71 64.90 REMARK 500 13 ALA A 89 30.92 -163.05 REMARK 500 13 LEU A 92 110.97 60.36 REMARK 500 13 LYS A 110 91.51 -175.47 REMARK 500 13 LEU A 123 94.73 -169.43 REMARK 500 13 THR A 141 157.98 -37.58 REMARK 500 13 THR A 152 -169.56 -125.12 REMARK 500 13 GLU A 155 137.14 -170.13 REMARK 500 13 TYR A 162 99.70 -69.79 REMARK 500 14 ALA A 87 95.84 -69.24 REMARK 500 14 ASP A 88 -79.33 64.15 REMARK 500 14 LYS A 110 91.36 -175.40 REMARK 500 14 LEU A 123 92.53 -172.63 REMARK 500 14 THR A 141 166.22 -42.34 REMARK 500 14 LYS A 154 -128.92 62.20 REMARK 500 14 LYS A 164 133.50 63.20 REMARK 500 15 ALA A 87 -42.45 -171.13 REMARK 500 15 ASP A 88 -167.17 -113.22 REMARK 500 15 ALA A 89 178.87 62.20 REMARK 500 15 LYS A 110 91.50 -174.46 REMARK 500 15 LEU A 115 -177.91 -57.89 REMARK 500 15 ALA A 122 54.08 -142.67 REMARK 500 15 LEU A 123 88.17 -177.90 REMARK 500 15 THR A 141 163.64 -38.51 REMARK 500 15 LYS A 154 -138.33 59.73 REMARK 500 15 TYR A 162 95.72 -69.83 REMARK 500 16 ALA A 87 -69.43 -151.27 REMARK 500 16 ASP A 88 -66.34 -147.80 REMARK 500 16 LEU A 92 109.68 59.90 REMARK 500 16 LYS A 103 31.20 72.69 REMARK 500 16 LYS A 110 86.32 -161.59 REMARK 500 16 GLU A 121 29.90 46.56 REMARK 500 16 LEU A 123 105.17 -163.24 REMARK 500 16 ASN A 133 29.92 44.55 REMARK 500 16 THR A 141 160.54 -38.81 REMARK 500 16 LYS A 154 -129.36 60.44 REMARK 500 16 LYS A 164 131.78 63.79 REMARK 500 17 LEU A 92 150.61 62.13 REMARK 500 17 LYS A 110 91.55 -174.71 REMARK 500 17 ALA A 122 58.14 -152.79 REMARK 500 17 LEU A 123 77.47 -178.41 REMARK 500 17 THR A 141 163.52 -40.89 REMARK 500 17 LYS A 164 156.18 61.57 REMARK 500 18 ALA A 89 33.12 -98.76 REMARK 500 18 LEU A 92 -179.00 59.38 REMARK 500 18 LYS A 110 92.31 -177.32 REMARK 500 18 LEU A 123 108.46 -171.70 REMARK 500 18 THR A 141 163.50 -39.41 REMARK 500 18 LYS A 154 -138.27 60.11 REMARK 500 18 MET A 163 28.13 -145.14 REMARK 500 19 ALA A 87 -70.68 -71.41 REMARK 500 19 ASP A 88 -56.18 -143.17 REMARK 500 19 LEU A 92 -168.28 45.64 REMARK 500 19 SER A 109 -6.08 -145.11 REMARK 500 19 LYS A 110 91.08 -172.22 REMARK 500 19 LEU A 123 94.35 -174.56 REMARK 500 19 THR A 141 161.94 -38.68 REMARK 500 19 LYS A 151 -102.68 -97.31 REMARK 500 19 THR A 152 177.69 54.89 REMARK 500 19 LYS A 164 170.72 56.46 REMARK 500 20 ALA A 87 37.61 -151.21 REMARK 500 20 LYS A 103 30.93 72.24 REMARK 500 20 LYS A 110 86.93 -161.71 REMARK 500 20 LEU A 123 102.97 -165.56 REMARK 500 20 ILE A 129 91.16 -69.99 REMARK 500 20 THR A 141 160.04 -38.89 REMARK 500 20 LYS A 154 -136.19 61.16 REMARK 500 20 LYS A 164 -68.77 68.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z87 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE SPLIT PH-PDZ SUPRAMODULE OF ALPHA REMARK 900 -SYNTROPHIN DBREF 1Z86 A 79 165 UNP Q61234 SNTA1_MOUSE 79 165 SEQRES 1 A 87 ARG ARG ARG VAL THR VAL ARG LYS ALA ASP ALA GLY GLY SEQRES 2 A 87 LEU GLY ILE SER ILE LYS GLY GLY ARG GLU ASN LYS MET SEQRES 3 A 87 PRO ILE LEU ILE SER LYS ILE PHE LYS GLY LEU ALA ALA SEQRES 4 A 87 ASP GLN THR GLU ALA LEU PHE VAL GLY ASP ALA ILE LEU SEQRES 5 A 87 SER VAL ASN GLY GLU ASP LEU SER SER ALA THR HIS ASP SEQRES 6 A 87 GLU ALA VAL GLN ALA LEU LYS LYS THR GLY LYS GLU VAL SEQRES 7 A 87 VAL LEU GLU VAL LYS TYR MET LYS GLU HELIX 1 1 ARG A 100 LYS A 103 5 4 HELIX 2 2 LEU A 115 GLU A 121 1 7 HELIX 3 3 SER A 138 ALA A 140 5 3 HELIX 4 4 THR A 141 LYS A 151 1 11 SHEET 1 A 5 ARG A 80 VAL A 84 0 SHEET 2 A 5 VAL A 156 TYR A 162 -1 O LEU A 158 N VAL A 82 SHEET 3 A 5 ASP A 127 VAL A 132 -1 N ALA A 128 O LYS A 161 SHEET 4 A 5 MET A 104 ILE A 111 -1 N ILE A 108 O ASP A 127 SHEET 5 A 5 ILE A 94 GLY A 99 -1 N SER A 95 O SER A 109 SHEET 1 B 4 ARG A 80 VAL A 84 0 SHEET 2 B 4 VAL A 156 TYR A 162 -1 O LEU A 158 N VAL A 82 SHEET 3 B 4 ASP A 127 VAL A 132 -1 N ALA A 128 O LYS A 161 SHEET 4 B 4 GLU A 135 ASP A 136 -1 O GLU A 135 N VAL A 132 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 240 0 0 4 9 0 0 6 0 0 0 7 END