HEADER VIRAL PROTEIN 21-MAR-05 1Z66 TITLE NMR SOLUTION STRUCTURE OF DOMAIN III OF E-PROTEIN OF TICK- TITLE 2 BORNE LANGAT FLAVIVIRUS (NO RDC RESTRAINTS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR ENVELOPE PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN III; COMPND 5 SYNONYM: E-PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LANGAT VIRUS; SOURCE 3 ORGANISM_TAXID: 11085; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-DE3 CODON PLUS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: HIS-MBP-T KEYWDS VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.MUKHERJEE,K.DUTTA,M.A.WHITE,D.COWBURN,R.O.FOX REVDAT 3 24-FEB-09 1Z66 1 VERSN REVDAT 2 31-OCT-06 1Z66 1 JRNL REVDAT 1 28-MAR-06 1Z66 0 JRNL AUTH M.MUKHERJEE,K.DUTTA,M.A.WHITE,D.COWBURN,R.O.FOX JRNL TITL NMR SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF JRNL TITL 2 DOMAIN III OF THE E PROTEIN OF TICK-BORNE LANGAT JRNL TITL 3 FLAVIVIRUS SUGGESTS A POTENTIAL SITE FOR MOLECULAR JRNL TITL 4 RECOGNITION. JRNL REF PROTEIN SCI. V. 15 1342 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16731969 JRNL DOI 10.1110/PS.051844006 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z66 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB032347. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 10MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM LANGAT E-PROTEIN DOMAIN REMARK 210 III, U-15N, 13C, 20MM BIS REMARK 210 TRIS, 10MM NACL, 95% H2O, 5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : C13 EDITED NOESYHSQC, N15 REMARK 210 EDITED NOESYHSQC, HNHA, HNCO-3J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ, 800 MHZ, REMARK 210 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.0, CNS 1.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D AND 3D REMARK 210 HETERONUCLEAR NMR EXPERIMENTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LYS A 300 REMARK 465 GLY A 301 REMARK 465 LEU A 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 305 -166.59 -173.48 REMARK 500 1 TRP A 314 96.45 -53.49 REMARK 500 1 HIS A 323 -56.46 -126.89 REMARK 500 1 ASP A 324 -23.30 -175.31 REMARK 500 1 SER A 333 28.50 -149.32 REMARK 500 1 PRO A 337 97.07 -25.90 REMARK 500 1 ASN A 353 107.77 -53.20 REMARK 500 1 PRO A 360 41.68 -87.28 REMARK 500 1 ASN A 361 73.55 -165.61 REMARK 500 1 GLU A 365 -165.80 -104.24 REMARK 500 1 PRO A 377 138.20 -37.08 REMARK 500 1 PRO A 378 136.45 -34.92 REMARK 500 1 HIS A 390 122.24 -171.77 REMARK 500 2 ASP A 324 -24.73 74.13 REMARK 500 2 SER A 333 52.84 -157.25 REMARK 500 2 PRO A 337 98.25 -27.26 REMARK 500 2 PRO A 360 41.04 -91.75 REMARK 500 2 ASN A 361 65.84 -152.94 REMARK 500 2 GLU A 365 -168.53 -111.03 REMARK 500 2 PRO A 377 136.68 -32.93 REMARK 500 2 PRO A 378 128.75 -35.79 REMARK 500 3 THR A 305 -167.67 -171.29 REMARK 500 3 ARG A 316 110.24 -168.89 REMARK 500 3 PRO A 318 118.25 -30.78 REMARK 500 3 ASP A 324 23.08 47.41 REMARK 500 3 PRO A 337 92.73 -25.51 REMARK 500 3 ASN A 353 108.67 -53.29 REMARK 500 3 PRO A 360 48.93 -92.07 REMARK 500 3 ASN A 361 70.11 -170.47 REMARK 500 3 PRO A 377 133.35 -27.83 REMARK 500 3 PRO A 378 138.46 -37.09 REMARK 500 4 THR A 305 -173.61 176.78 REMARK 500 4 LYS A 311 38.19 -83.02 REMARK 500 4 HIS A 323 55.33 -140.01 REMARK 500 4 PRO A 337 92.30 -26.05 REMARK 500 4 PRO A 360 43.30 -86.71 REMARK 500 4 ASN A 361 61.03 -150.54 REMARK 500 4 GLU A 365 -168.72 -109.46 REMARK 500 4 GLN A 375 145.78 -176.04 REMARK 500 4 PRO A 377 136.36 -23.94 REMARK 500 4 PRO A 378 134.20 -37.11 REMARK 500 4 HIS A 390 116.07 -170.08 REMARK 500 5 THR A 305 -167.18 -168.43 REMARK 500 5 PRO A 318 110.69 -36.34 REMARK 500 5 ASP A 324 -24.42 170.08 REMARK 500 5 PRO A 337 97.22 -25.48 REMARK 500 5 ASN A 353 107.99 -54.37 REMARK 500 5 ALA A 355 96.93 -60.02 REMARK 500 5 PRO A 360 37.91 -92.47 REMARK 500 5 GLU A 365 -165.47 -100.12 REMARK 500 5 PRO A 378 128.62 -38.81 REMARK 500 6 THR A 305 -165.45 -177.58 REMARK 500 6 TRP A 314 98.49 -63.80 REMARK 500 6 ARG A 316 116.12 -165.24 REMARK 500 6 ASP A 324 -25.51 169.19 REMARK 500 6 PRO A 337 93.37 -25.62 REMARK 500 6 ASN A 353 108.09 -55.78 REMARK 500 6 PRO A 360 43.92 -86.18 REMARK 500 6 ASN A 361 67.62 -172.14 REMARK 500 6 GLU A 365 -165.56 -79.72 REMARK 500 6 GLN A 375 144.92 -175.65 REMARK 500 6 PRO A 377 133.27 -29.47 REMARK 500 6 PRO A 378 135.69 -35.37 REMARK 500 6 HIS A 390 116.98 -165.39 REMARK 500 7 THR A 305 -167.40 -176.39 REMARK 500 7 TRP A 314 99.90 -59.98 REMARK 500 7 ASP A 324 -28.00 -178.00 REMARK 500 7 SER A 333 19.10 -152.45 REMARK 500 7 PRO A 337 92.60 -26.02 REMARK 500 7 PRO A 360 46.03 -87.46 REMARK 500 7 ASN A 361 62.68 -163.13 REMARK 500 7 PRO A 377 132.32 -31.36 REMARK 500 7 PRO A 378 130.93 -37.17 REMARK 500 7 HIS A 390 102.23 -162.86 REMARK 500 8 THR A 305 -166.45 -173.81 REMARK 500 8 TRP A 314 96.58 -54.01 REMARK 500 8 PRO A 337 96.38 -25.98 REMARK 500 8 ASN A 353 108.05 -56.19 REMARK 500 8 PRO A 360 43.65 -86.40 REMARK 500 8 ASN A 361 58.65 -150.37 REMARK 500 8 GLU A 365 -166.24 -106.03 REMARK 500 8 GLN A 375 145.08 -174.32 REMARK 500 8 PRO A 377 141.80 -36.48 REMARK 500 8 PRO A 378 134.64 -37.53 REMARK 500 9 THR A 305 -172.42 -176.29 REMARK 500 9 TRP A 314 99.12 -61.98 REMARK 500 9 HIS A 323 -78.07 -114.84 REMARK 500 9 PRO A 337 95.90 -25.46 REMARK 500 9 HIS A 347 64.78 37.86 REMARK 500 9 PRO A 360 41.22 -86.01 REMARK 500 9 ASN A 361 70.62 -160.31 REMARK 500 9 GLU A 365 -168.72 -108.50 REMARK 500 9 GLN A 375 146.73 -177.65 REMARK 500 9 PRO A 377 133.45 -26.87 REMARK 500 9 PRO A 378 128.73 -35.58 REMARK 500 10 THR A 305 -167.61 -171.93 REMARK 500 10 ASP A 324 -24.56 -175.59 REMARK 500 10 THR A 325 -168.19 -103.76 REMARK 500 10 SER A 333 45.71 -164.69 REMARK 500 10 PRO A 337 94.82 -25.53 REMARK 500 10 PRO A 350 46.29 -77.89 REMARK 500 10 PRO A 360 40.70 -82.21 REMARK 500 10 ASN A 361 69.77 -170.56 REMARK 500 10 PRO A 377 143.25 -36.08 REMARK 500 10 PRO A 378 135.69 -37.04 REMARK 500 10 HIS A 390 102.76 -163.05 REMARK 500 11 THR A 305 -170.31 -179.57 REMARK 500 11 LYS A 311 49.40 -88.57 REMARK 500 11 ARG A 316 109.18 -160.04 REMARK 500 11 PRO A 318 118.35 -32.72 REMARK 500 11 ASP A 324 -32.21 177.12 REMARK 500 11 PRO A 337 98.19 -25.13 REMARK 500 11 ASN A 361 58.90 -160.49 REMARK 500 11 GLU A 365 -165.32 -120.72 REMARK 500 11 PRO A 377 131.02 -29.11 REMARK 500 11 PRO A 378 139.36 -38.28 REMARK 500 12 THR A 305 -175.90 -175.90 REMARK 500 12 TRP A 314 96.48 -65.33 REMARK 500 12 PRO A 318 115.18 -34.25 REMARK 500 12 HIS A 323 -71.48 -98.51 REMARK 500 12 ASP A 324 18.13 -171.61 REMARK 500 12 SER A 333 -62.78 -122.80 REMARK 500 12 PRO A 337 96.68 -27.16 REMARK 500 12 HIS A 347 61.76 35.29 REMARK 500 12 ASN A 353 107.82 -51.82 REMARK 500 12 PRO A 360 35.33 -87.16 REMARK 500 12 PRO A 377 124.95 -28.82 REMARK 500 12 PRO A 378 131.82 -37.39 REMARK 500 12 HIS A 390 116.25 -162.08 REMARK 500 13 TRP A 314 96.34 -60.36 REMARK 500 13 PRO A 318 115.23 -34.27 REMARK 500 13 PRO A 337 96.59 -25.79 REMARK 500 13 PRO A 350 47.85 -76.55 REMARK 500 13 PRO A 360 40.36 -87.57 REMARK 500 13 ASN A 361 68.57 -163.09 REMARK 500 13 GLN A 375 170.74 178.87 REMARK 500 13 PRO A 377 131.74 -39.25 REMARK 500 13 PRO A 378 129.49 -38.05 REMARK 500 13 HIS A 390 115.20 -165.88 REMARK 500 14 THR A 305 -166.45 178.73 REMARK 500 14 PRO A 318 120.41 -37.03 REMARK 500 14 HIS A 323 -71.89 -99.61 REMARK 500 14 ASP A 324 21.12 -175.06 REMARK 500 14 SER A 333 -7.80 -143.24 REMARK 500 14 PRO A 337 94.23 -25.36 REMARK 500 14 PRO A 360 44.16 -85.61 REMARK 500 14 ASN A 361 67.86 -168.00 REMARK 500 14 GLN A 375 158.92 175.74 REMARK 500 14 PRO A 377 125.64 -27.06 REMARK 500 14 PRO A 378 133.04 -37.53 REMARK 500 14 HIS A 390 118.44 -164.95 REMARK 500 15 THR A 305 -172.11 -176.37 REMARK 500 15 TRP A 314 96.10 -50.99 REMARK 500 15 ARG A 316 113.64 -164.43 REMARK 500 15 PRO A 318 118.35 -39.41 REMARK 500 15 ASP A 324 -26.06 166.18 REMARK 500 15 PRO A 337 97.85 -27.38 REMARK 500 15 PRO A 360 41.35 -84.44 REMARK 500 15 ASN A 361 61.01 -155.68 REMARK 500 15 GLU A 365 -165.10 -114.52 REMARK 500 15 PRO A 377 129.34 -24.02 REMARK 500 15 PRO A 378 128.61 -36.97 REMARK 500 15 HIS A 390 123.75 -173.31 REMARK 500 16 THR A 305 -171.00 -177.42 REMARK 500 16 TRP A 314 101.59 -52.70 REMARK 500 16 PRO A 318 116.30 -30.79 REMARK 500 16 SER A 333 35.80 -162.86 REMARK 500 16 PRO A 337 94.75 -26.64 REMARK 500 16 PRO A 341 82.66 -69.90 REMARK 500 16 ASN A 353 108.40 -60.00 REMARK 500 16 PRO A 360 33.57 -85.77 REMARK 500 16 ASN A 361 63.04 -167.60 REMARK 500 16 GLN A 375 155.39 172.63 REMARK 500 16 PRO A 377 125.85 -16.52 REMARK 500 16 HIS A 390 119.45 -170.81 REMARK 500 17 THR A 305 -169.72 178.55 REMARK 500 17 ARG A 316 119.12 -164.33 REMARK 500 17 HIS A 323 -73.26 -105.40 REMARK 500 17 ASP A 324 15.89 -165.87 REMARK 500 17 SER A 333 -41.13 -137.49 REMARK 500 17 PRO A 337 95.30 -26.78 REMARK 500 17 HIS A 347 63.88 39.25 REMARK 500 17 ASN A 353 108.50 -51.23 REMARK 500 17 ASN A 361 69.87 -168.02 REMARK 500 17 GLU A 365 -165.68 -104.15 REMARK 500 17 PRO A 377 131.24 -36.10 REMARK 500 18 THR A 305 -169.83 -174.32 REMARK 500 18 TRP A 314 104.19 -56.06 REMARK 500 18 PRO A 318 107.67 -38.52 REMARK 500 18 THR A 325 -168.53 -129.53 REMARK 500 18 SER A 333 30.72 -152.48 REMARK 500 18 PRO A 337 93.49 -24.88 REMARK 500 18 PRO A 350 38.67 -77.14 REMARK 500 18 ASN A 353 108.07 -55.11 REMARK 500 18 PRO A 377 130.32 -19.97 REMARK 500 18 PRO A 378 131.91 -37.92 REMARK 500 19 THR A 305 -174.76 -179.24 REMARK 500 19 PRO A 318 113.40 -33.08 REMARK 500 19 THR A 325 -168.85 -124.23 REMARK 500 19 SER A 333 65.11 -153.51 REMARK 500 19 PRO A 337 96.49 -26.55 REMARK 500 19 PRO A 360 32.57 -87.23 REMARK 500 19 ASN A 361 70.78 -177.01 REMARK 500 19 PRO A 377 135.42 -31.30 REMARK 500 19 PRO A 378 128.43 -37.00 REMARK 500 19 HIS A 390 109.90 -164.79 REMARK 500 20 THR A 305 -171.48 -177.14 REMARK 500 20 LYS A 311 37.48 -95.29 REMARK 500 20 TRP A 314 105.58 -54.70 REMARK 500 20 ARG A 316 114.88 -165.31 REMARK 500 20 PRO A 318 119.60 -39.22 REMARK 500 20 ASP A 324 -24.92 170.20 REMARK 500 20 PRO A 337 95.47 -27.52 REMARK 500 20 ASN A 361 58.73 -157.96 REMARK 500 20 GLU A 365 -165.47 -103.12 REMARK 500 20 PRO A 377 130.88 -29.97 REMARK 500 20 PRO A 378 129.65 -37.50 REMARK 500 20 HIS A 390 123.53 -170.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YZO RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF DOMAIN III OF THE E-PROTEIN OF REMARK 900 TICK-BORNE LANGAT FLAVIVIRUS (WITHOUT RDC RESTRAINTS) REMARK 900 RELATED ID: 1SVB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENVELOPE GLYCOPROTEIN FROM TICK-BORNE REMARK 900 ENCEPHALITIS VIRUS REMARK 900 RELATED ID: 1PJW RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE DOMAIN III OF THE JAPAN REMARK 900 ENCEPHALITIS VIRUS ENVELOPE PROTEIN REMARK 900 RELATED ID: 1S6N RELATED DB: PDB REMARK 900 NMR STRUCTURE OF DOMAIN III OF THE WEST NILE VIRUS ENVELOPE REMARK 900 PROTEIN. DBREF 1Z66 A 300 395 UNP P29838 POLG_LANVY 580 675 SEQRES 1 A 96 LYS GLY LEU THR TYR THR VAL CYS ASP LYS THR LYS PHE SEQRES 2 A 96 THR TRP LYS ARG ALA PRO THR ASP SER GLY HIS ASP THR SEQRES 3 A 96 VAL VAL MET GLU VAL GLY PHE SER GLY THR ARG PRO CYS SEQRES 4 A 96 ARG ILE PRO VAL ARG ALA VAL ALA HIS GLY VAL PRO GLU SEQRES 5 A 96 VAL ASN VAL ALA MET LEU ILE THR PRO ASN PRO THR MET SEQRES 6 A 96 GLU ASN ASN GLY GLY GLY PHE ILE GLU MET GLN LEU PRO SEQRES 7 A 96 PRO GLY ASP ASN ILE ILE TYR VAL GLY ASP LEU ASN HIS SEQRES 8 A 96 GLN TRP PHE GLN LYS SHEET 1 A 3 THR A 313 ASP A 320 0 SHEET 2 A 3 VAL A 326 GLY A 331 -1 O VAL A 327 N THR A 319 SHEET 3 A 3 GLY A 370 MET A 374 -1 O MET A 374 N VAL A 326 SHEET 1 B 2 CYS A 338 ARG A 339 0 SHEET 2 B 2 THR A 363 MET A 364 -1 O MET A 364 N CYS A 338 SHEET 1 C 3 VAL A 342 ALA A 346 0 SHEET 2 C 3 GLY A 379 VAL A 385 -1 O ILE A 382 N VAL A 345 SHEET 3 C 3 LEU A 388 GLN A 394 -1 O LEU A 388 N VAL A 385 SSBOND 1 CYS A 307 CYS A 338 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 314 0 0 0 8 0 0 6 0 0 0 8 END