HEADER ISOMERASE 15-MAR-05 1Z45 TITLE CRYSTAL STRUCTURE OF THE GAL10 FUSION PROTEIN GALACTOSE TITLE 2 MUTAROTASE/UDP-GALACTOSE 4-EPIMERASE FROM SACCHAROMYCES CEREVISIAE TITLE 3 COMPLEXED WITH NAD, UDP-GLUCOSE, AND GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAL10 BIFUNCTIONAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 5.1.3.2, 5.1.3.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: GAL10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS EPIMERASE, MUTAROTASE, METABOLISM, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,H.M.HOLDEN REVDAT 8 20-OCT-21 1Z45 1 SEQADV HETSYN REVDAT 7 29-JUL-20 1Z45 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 08-MAY-13 1Z45 1 HET HETATM HETNAM HETSYN REVDAT 6 2 1 REMARK SITE REVDAT 5 02-MAY-12 1Z45 1 COMPND VERSN REVDAT 4 24-FEB-09 1Z45 1 VERSN REVDAT 3 26-JUL-05 1Z45 1 JRNL REVDAT 2 10-MAY-05 1Z45 1 JRNL REVDAT 1 05-APR-05 1Z45 0 JRNL AUTH J.B.THODEN,H.M.HOLDEN JRNL TITL THE MOLECULAR ARCHITECTURE OF GALACTOSE JRNL TITL 2 MUTAROTASE/UDP-GALACTOSE 4-EPIMERASE FROM SACCHAROMYCES JRNL TITL 3 CEREVISIAE. JRNL REF J.BIOL.CHEM. V. 280 21900 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15795221 JRNL DOI 10.1074/JBC.M502411200 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 89827 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 9080 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1960 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 89827 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 722 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.550 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MONTEL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT, PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89827 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34100 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRIES 1EK6 & 1SO0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PENTAERYTHRITOL PROPOXYLATE 5/4, REMARK 280 HEPES, SODIUM CHLORIDE, GALACTOSE, UDP-GLUCOSE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.45000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.15000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.45000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.15000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.45000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.60000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.15000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.45000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.60000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMODIMER. THE SECOND PART OF THE BIOLOGICAL ASSEMBLY REMARK 300 IS GENERATED BY THE TWO-FOLD AXIS REMARK 300 LOCATED AT 42.9 0.0 0.0 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 776 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 840 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1014 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1357 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 GLU A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 GLY A 234 REMARK 465 ASP A 235 REMARK 465 ASP A 236 REMARK 465 TYR A 237 REMARK 465 ASP A 238 REMARK 465 SER A 239 REMARK 465 LYS A 306 REMARK 465 VAL A 307 REMARK 465 THR A 308 REMARK 465 GLY A 309 REMARK 465 ARG A 310 REMARK 465 ARG A 311 REMARK 465 ALA A 312 REMARK 465 GLY A 313 REMARK 465 ASP A 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 546 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1156 O HOH A 1156 2665 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 56 CD GLU A 56 OE2 0.067 REMARK 500 GLU A 77 CD GLU A 77 OE2 0.071 REMARK 500 GLU A 171 CD GLU A 171 OE2 0.067 REMARK 500 GLU A 228 CD GLU A 228 OE2 0.068 REMARK 500 GLU A 270 CD GLU A 270 OE2 0.081 REMARK 500 GLU A 272 CD GLU A 272 OE2 0.074 REMARK 500 GLU A 290 CD GLU A 290 OE2 0.070 REMARK 500 GLU A 334 CD GLU A 334 OE2 0.068 REMARK 500 GLU A 338 CD GLU A 338 OE2 0.071 REMARK 500 GLU A 413 CD GLU A 413 OE2 0.069 REMARK 500 GLU A 517 CD GLU A 517 OE2 0.071 REMARK 500 GLU A 528 CD GLU A 528 OE2 0.072 REMARK 500 GLU A 579 CD GLU A 579 OE2 0.068 REMARK 500 GLU A 606 CD GLU A 606 OE2 0.080 REMARK 500 GLU A 619 CD GLU A 619 OE2 0.075 REMARK 500 GLU A 657 CD GLU A 657 OE2 0.069 REMARK 500 GLU A 676 CD GLU A 676 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 69 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 TYR A 83 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 176 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 176 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 VAL A 224 CA - CB - CG1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP A 241 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 241 CB - CG - OD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP A 247 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 VAL A 288 CA - CB - CG1 ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP A 302 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 323 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 323 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 327 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 327 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 397 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 433 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 500 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 500 CB - CG - OD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 SER A 562 N - CA - CB ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 564 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 566 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 566 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 630 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 650 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 650 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 680 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 680 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 697 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 22 -71.99 -55.67 REMARK 500 ASN A 46 33.45 -140.66 REMARK 500 ASP A 181 61.87 -168.68 REMARK 500 PHE A 193 -119.32 -93.67 REMARK 500 LEU A 209 69.25 -69.42 REMARK 500 ILE A 211 114.66 -166.25 REMARK 500 LEU A 316 -73.13 -59.88 REMARK 500 LEU A 318 71.35 -159.22 REMARK 500 ALA A 366 -135.49 -135.85 REMARK 500 ASP A 419 45.90 -103.69 REMARK 500 ASN A 432 -162.36 66.73 REMARK 500 LYS A 436 12.35 54.36 REMARK 500 SER A 460 -110.77 35.04 REMARK 500 ASN A 533 86.64 -170.08 REMARK 500 ASP A 599 67.39 -161.61 REMARK 500 ALA A 608 134.85 -39.73 REMARK 500 PRO A 610 108.62 -59.82 REMARK 500 SER A 653 -150.19 -123.81 REMARK 500 ALA A 654 63.46 32.52 REMARK 500 TYR A 669 -151.73 58.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 350 O REMARK 620 2 ASN A 351 OD1 87.4 REMARK 620 3 GLN A 475 OE1 144.8 76.7 REMARK 620 4 HOH A 816 O 84.8 157.6 98.1 REMARK 620 5 HOH A 817 O 119.2 102.3 94.9 99.8 REMARK 620 6 HOH A1106 O 82.4 97.0 69.0 61.1 151.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 357 O REMARK 620 2 VAL A 360 O 96.9 REMARK 620 3 HOH A1053 O 87.4 92.2 REMARK 620 4 HOH A1054 O 89.1 89.8 176.2 REMARK 620 5 HOH A1055 O 85.0 161.9 105.8 72.2 REMARK 620 6 HOH A1223 O 174.7 83.7 97.8 85.6 92.8 REMARK 620 N 1 2 3 4 5 DBREF 1Z45 A 1 699 UNP P04397 GAL10_YEAST 1 699 SEQADV 1Z45 ILE A 518 UNP P04397 MET 518 ENGINEERED MUTATION SEQRES 1 A 699 MET THR ALA GLN LEU GLN SER GLU SER THR SER LYS ILE SEQRES 2 A 699 VAL LEU VAL THR GLY GLY ALA GLY TYR ILE GLY SER HIS SEQRES 3 A 699 THR VAL VAL GLU LEU ILE GLU ASN GLY TYR ASP CYS VAL SEQRES 4 A 699 VAL ALA ASP ASN LEU SER ASN SER THR TYR ASP SER VAL SEQRES 5 A 699 ALA ARG LEU GLU VAL LEU THR LYS HIS HIS ILE PRO PHE SEQRES 6 A 699 TYR GLU VAL ASP LEU CYS ASP ARG LYS GLY LEU GLU LYS SEQRES 7 A 699 VAL PHE LYS GLU TYR LYS ILE ASP SER VAL ILE HIS PHE SEQRES 8 A 699 ALA GLY LEU LYS ALA VAL GLY GLU SER THR GLN ILE PRO SEQRES 9 A 699 LEU ARG TYR TYR HIS ASN ASN ILE LEU GLY THR VAL VAL SEQRES 10 A 699 LEU LEU GLU LEU MET GLN GLN TYR ASN VAL SER LYS PHE SEQRES 11 A 699 VAL PHE SER SER SER ALA THR VAL TYR GLY ASP ALA THR SEQRES 12 A 699 ARG PHE PRO ASN MET ILE PRO ILE PRO GLU GLU CYS PRO SEQRES 13 A 699 LEU GLY PRO THR ASN PRO TYR GLY HIS THR LYS TYR ALA SEQRES 14 A 699 ILE GLU ASN ILE LEU ASN ASP LEU TYR ASN SER ASP LYS SEQRES 15 A 699 LYS SER TRP LYS PHE ALA ILE LEU ARG TYR PHE ASN PRO SEQRES 16 A 699 ILE GLY ALA HIS PRO SER GLY LEU ILE GLY GLU ASP PRO SEQRES 17 A 699 LEU GLY ILE PRO ASN ASN LEU LEU PRO TYR MET ALA GLN SEQRES 18 A 699 VAL ALA VAL GLY ARG ARG GLU LYS LEU TYR ILE PHE GLY SEQRES 19 A 699 ASP ASP TYR ASP SER ARG ASP GLY THR PRO ILE ARG ASP SEQRES 20 A 699 TYR ILE HIS VAL VAL ASP LEU ALA LYS GLY HIS ILE ALA SEQRES 21 A 699 ALA LEU GLN TYR LEU GLU ALA TYR ASN GLU ASN GLU GLY SEQRES 22 A 699 LEU CYS ARG GLU TRP ASN LEU GLY SER GLY LYS GLY SER SEQRES 23 A 699 THR VAL PHE GLU VAL TYR HIS ALA PHE CYS LYS ALA SER SEQRES 24 A 699 GLY ILE ASP LEU PRO TYR LYS VAL THR GLY ARG ARG ALA SEQRES 25 A 699 GLY ASP VAL LEU ASN LEU THR ALA LYS PRO ASP ARG ALA SEQRES 26 A 699 LYS ARG GLU LEU LYS TRP GLN THR GLU LEU GLN VAL GLU SEQRES 27 A 699 ASP SER CYS LYS ASP LEU TRP LYS TRP THR THR GLU ASN SEQRES 28 A 699 PRO PHE GLY TYR GLN LEU ARG GLY VAL GLU ALA ARG PHE SEQRES 29 A 699 SER ALA GLU ASP MET ARG TYR ASP ALA ARG PHE VAL THR SEQRES 30 A 699 ILE GLY ALA GLY THR ARG PHE GLN ALA THR PHE ALA ASN SEQRES 31 A 699 LEU GLY ALA SER ILE VAL ASP LEU LYS VAL ASN GLY GLN SEQRES 32 A 699 SER VAL VAL LEU GLY TYR GLU ASN GLU GLU GLY TYR LEU SEQRES 33 A 699 ASN PRO ASP SER ALA TYR ILE GLY ALA THR ILE GLY ARG SEQRES 34 A 699 TYR ALA ASN ARG ILE SER LYS GLY LYS PHE SER LEU CYS SEQRES 35 A 699 ASN LYS ASP TYR GLN LEU THR VAL ASN ASN GLY VAL ASN SEQRES 36 A 699 ALA ASN HIS SER SER ILE GLY SER PHE HIS ARG LYS ARG SEQRES 37 A 699 PHE LEU GLY PRO ILE ILE GLN ASN PRO SER LYS ASP VAL SEQRES 38 A 699 PHE THR ALA GLU TYR MET LEU ILE ASP ASN GLU LYS ASP SEQRES 39 A 699 THR GLU PHE PRO GLY ASP LEU LEU VAL THR ILE GLN TYR SEQRES 40 A 699 THR VAL ASN VAL ALA GLN LYS SER LEU GLU ILE VAL TYR SEQRES 41 A 699 LYS GLY LYS LEU THR ALA GLY GLU ALA THR PRO ILE ASN SEQRES 42 A 699 LEU THR ASN HIS SER TYR PHE ASN LEU ASN LYS PRO TYR SEQRES 43 A 699 GLY ASP THR ILE GLU GLY THR GLU ILE MET VAL ARG SER SEQRES 44 A 699 LYS LYS SER VAL ASP VAL ASP LYS ASN MET ILE PRO THR SEQRES 45 A 699 GLY ASN ILE VAL ASP ARG GLU ILE ALA THR PHE ASN SER SEQRES 46 A 699 THR LYS PRO THR VAL LEU GLY PRO LYS ASN PRO GLN PHE SEQRES 47 A 699 ASP CYS CYS PHE VAL VAL ASP GLU ASN ALA LYS PRO SER SEQRES 48 A 699 GLN ILE ASN THR LEU ASN ASN GLU LEU THR LEU ILE VAL SEQRES 49 A 699 LYS ALA PHE HIS PRO ASP SER ASN ILE THR LEU GLU VAL SEQRES 50 A 699 LEU SER THR GLU PRO THR TYR GLN PHE TYR THR GLY ASP SEQRES 51 A 699 PHE LEU SER ALA GLY TYR GLU ALA ARG GLN GLY PHE ALA SEQRES 52 A 699 ILE GLU PRO GLY ARG TYR ILE ASP ALA ILE ASN GLN GLU SEQRES 53 A 699 ASN TRP LYS ASP CYS VAL THR LEU LYS ASN GLY GLU THR SEQRES 54 A 699 TYR GLY SER LYS ILE VAL TYR ARG PHE SER HET GAL A 700 12 HET NA A 701 1 HET NA A 702 1 HET NAD A 703 44 HET UPG A 704 36 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NA SODIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 2 GAL C6 H12 O6 FORMUL 3 NA 2(NA 1+) FORMUL 5 NAD C21 H27 N7 O14 P2 FORMUL 6 UPG C15 H24 N2 O17 P2 FORMUL 7 HOH *722(H2 O) HELIX 1 1 GLY A 21 ASN A 34 1 14 HELIX 2 2 TYR A 49 LYS A 60 1 12 HELIX 3 3 ASP A 72 TYR A 83 1 12 HELIX 4 4 ALA A 96 ILE A 103 1 8 HELIX 5 5 ILE A 103 ASN A 126 1 24 HELIX 6 6 THR A 137 GLY A 140 5 4 HELIX 7 7 ASP A 141 PHE A 145 5 5 HELIX 8 8 ASN A 161 ASP A 181 1 21 HELIX 9 9 ASN A 214 VAL A 224 1 11 HELIX 10 10 VAL A 251 TYR A 268 1 18 HELIX 11 11 VAL A 288 GLY A 300 1 13 HELIX 12 12 PRO A 322 LEU A 329 1 8 HELIX 13 13 GLN A 336 ASN A 351 1 16 HELIX 14 14 LEU A 391 ALA A 393 5 3 HELIX 15 15 ASN A 411 LEU A 416 1 6 HELIX 16 16 SER A 459 LYS A 467 5 9 HELIX 17 17 ASN A 491 THR A 495 5 5 HELIX 18 18 ASP A 671 GLN A 675 5 5 HELIX 19 19 TRP A 678 CYS A 681 5 4 SHEET 1 A 7 PHE A 65 GLU A 67 0 SHEET 2 A 7 ASP A 37 ASP A 42 1 N VAL A 40 O TYR A 66 SHEET 3 A 7 ILE A 13 THR A 17 1 N VAL A 14 O ASP A 37 SHEET 4 A 7 SER A 87 HIS A 90 1 O SER A 87 N LEU A 15 SHEET 5 A 7 LYS A 129 SER A 135 1 O VAL A 131 N HIS A 90 SHEET 6 A 7 LYS A 186 TYR A 192 1 O ALA A 188 N PHE A 130 SHEET 7 A 7 LEU A 274 LEU A 280 1 O ARG A 276 N ILE A 189 SHEET 1 B 2 ASN A 194 ILE A 196 0 SHEET 2 B 2 TYR A 248 HIS A 250 1 O ILE A 249 N ILE A 196 SHEET 1 C 2 ILE A 245 ARG A 246 0 SHEET 2 C 2 SER A 286 THR A 287 -1 O SER A 286 N ARG A 246 SHEET 1 D 5 VAL A 360 PHE A 364 0 SHEET 2 D 5 ARG A 374 ILE A 378 -1 O THR A 377 N GLU A 361 SHEET 3 D 5 PHE A 384 ALA A 389 -1 O PHE A 388 N VAL A 376 SHEET 4 D 5 ILE A 395 VAL A 400 -1 O ASP A 397 N THR A 387 SHEET 5 D 5 GLN A 403 SER A 404 -1 O GLN A 403 N VAL A 400 SHEET 1 E 2 THR A 426 ILE A 427 0 SHEET 2 E 2 THR A 535 ASN A 536 -1 O THR A 535 N ILE A 427 SHEET 1 F 2 ARG A 433 ILE A 434 0 SHEET 2 F 2 ALA A 456 ASN A 457 -1 O ALA A 456 N ILE A 434 SHEET 1 G 2 LYS A 438 LEU A 441 0 SHEET 2 G 2 LYS A 444 GLN A 447 -1 O TYR A 446 N PHE A 439 SHEET 1 H 9 LEU A 470 SER A 478 0 SHEET 2 H 9 VAL A 481 ASP A 490 -1 O THR A 483 N GLN A 475 SHEET 3 H 9 ASP A 500 ASN A 510 -1 O TYR A 507 N ALA A 484 SHEET 4 H 9 SER A 515 ALA A 526 -1 O THR A 525 N ASP A 500 SHEET 5 H 9 THR A 689 SER A 699 -1 O ILE A 694 N ILE A 518 SHEET 6 H 9 THR A 634 SER A 639 -1 N THR A 634 O SER A 699 SHEET 7 H 9 THR A 621 PHE A 627 -1 N ALA A 626 O LEU A 635 SHEET 8 H 9 THR A 553 VAL A 557 -1 N GLU A 554 O PHE A 627 SHEET 9 H 9 THR A 589 LEU A 591 -1 O THR A 589 N ILE A 555 SHEET 1 I 2 ALA A 529 PRO A 531 0 SHEET 2 I 2 THR A 683 LYS A 685 -1 O LEU A 684 N THR A 530 SHEET 1 J 4 TYR A 539 PHE A 540 0 SHEET 2 J 4 PHE A 662 GLY A 667 -1 O PHE A 662 N PHE A 540 SHEET 3 J 4 THR A 643 TYR A 647 -1 N TYR A 647 O ALA A 663 SHEET 4 J 4 ASP A 599 VAL A 603 -1 N PHE A 602 O TYR A 644 SHEET 1 K 2 LYS A 561 VAL A 565 0 SHEET 2 K 2 PRO A 571 ASP A 577 -1 O VAL A 576 N SER A 562 LINK O GLU A 350 NA NA A 702 1555 1555 2.35 LINK OD1 ASN A 351 NA NA A 702 1555 1555 2.84 LINK O LEU A 357 NA NA A 701 1555 1555 2.35 LINK O VAL A 360 NA NA A 701 1555 1555 2.39 LINK OE1 GLN A 475 NA NA A 702 1555 1555 2.34 LINK NA NA A 701 O HOH A1053 1555 1555 2.47 LINK NA NA A 701 O HOH A1054 1555 1555 2.46 LINK NA NA A 701 O HOH A1055 1555 1555 2.48 LINK NA NA A 701 O HOH A1223 1555 1555 2.48 LINK NA NA A 702 O HOH A 816 1555 1555 2.44 LINK NA NA A 702 O HOH A 817 1555 1555 2.34 LINK NA NA A 702 O HOH A1106 1555 1555 3.02 CISPEP 1 ILE A 149 PRO A 150 0 1.68 CISPEP 2 GLY A 428 ARG A 429 0 1.69 CISPEP 3 GLY A 471 PRO A 472 0 1.19 CISPEP 4 ASN A 595 PRO A 596 0 -1.81 CRYST1 120.900 125.200 142.300 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007027 0.00000 MASTER 416 0 5 19 39 0 0 6 0 0 0 54 END