HEADER TRANSCRIPTION 01-MAR-05 1Z05 TITLE CRYSTAL STRUCTURE OF THE ROK FAMILY TRANSCRIPTIONAL REGULATOR, HOMOLOG TITLE 2 OF E.COLI MLC PROTEIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, ROK FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR ELTOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: AAF95155; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ROK FAMILY, TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,J.S.BRUNZELLE,L.SHUVALOVA,F.R.COLLART,W.F.ANDERSON,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-JUN-18 1Z05 1 SEQADV REVDAT 4 11-OCT-17 1Z05 1 REMARK REVDAT 3 13-JUL-11 1Z05 1 VERSN REVDAT 2 24-FEB-09 1Z05 1 VERSN REVDAT 1 08-MAR-05 1Z05 0 JRNL AUTH G.MINASOV,J.S.BRUNZELLE,L.SHUVALOVA,F.R.COLLART,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF THE ROK FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR, HOMOLOG OF E.COLI MLC PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 31297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1651 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2461 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58000 REMARK 3 B22 (A**2) : -1.58000 REMARK 3 B33 (A**2) : 3.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3287 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4480 ; 1.098 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.292 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;38.184 ;24.899 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 573 ;13.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.076 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 511 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2490 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1582 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2316 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 320 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2132 ; 1.048 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3331 ; 1.671 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1288 ; 2.776 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1149 ; 4.236 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 82 REMARK 3 RESIDUE RANGE : A 395 A 405 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5622 24.4556 16.6833 REMARK 3 T TENSOR REMARK 3 T11: -0.2467 T22: -0.1168 REMARK 3 T33: -0.1675 T12: -0.0089 REMARK 3 T13: 0.0213 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 6.1598 L22: 4.7606 REMARK 3 L33: 5.2451 L12: -2.0575 REMARK 3 L13: 2.1239 L23: -2.5439 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: 0.0499 S13: -0.0696 REMARK 3 S21: 0.2374 S22: 0.0345 S23: 0.3346 REMARK 3 S31: -0.1264 S32: -0.1312 S33: -0.1083 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1221 20.1582 34.0140 REMARK 3 T TENSOR REMARK 3 T11: -0.1140 T22: -0.2065 REMARK 3 T33: -0.2198 T12: -0.0059 REMARK 3 T13: -0.0586 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.8450 L22: 4.4043 REMARK 3 L33: 2.2518 L12: -0.3758 REMARK 3 L13: 1.0943 L23: -0.9767 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: -0.0907 S13: 0.0719 REMARK 3 S21: 0.5190 S22: -0.0586 S23: -0.3053 REMARK 3 S31: -0.1488 S32: 0.1287 S33: 0.1185 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2413 -3.3882 22.6964 REMARK 3 T TENSOR REMARK 3 T11: -0.1324 T22: -0.1482 REMARK 3 T33: -0.1734 T12: -0.0160 REMARK 3 T13: -0.0017 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.3236 L22: 2.0743 REMARK 3 L33: 0.7874 L12: -1.7145 REMARK 3 L13: -0.6755 L23: 0.5043 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: -0.0007 S13: 0.0535 REMARK 3 S21: -0.0307 S22: 0.0727 S23: -0.1438 REMARK 3 S31: -0.0478 S32: 0.1789 S33: -0.1495 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Z05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33945 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 1.5M AMMONIUM SO4, 12% REMARK 280 GLYCEROL, 5MM BETA-MERCAPTOETHANOL, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.14550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.85950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.85950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.57275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.85950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.85950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.71825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.85950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.85950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.57275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.85950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.85950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.71825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.14550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROBABLY A DIMER. THE SECON PART COULD BE GENERATED BY THE REMARK 300 TWO FOLD AXIS: -Y,-X,-Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.14550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 GLN A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 7 REMARK 465 HIS A 8 REMARK 465 ILE A 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 70.14 -109.11 REMARK 500 ASP A 143 -113.40 -123.04 REMARK 500 ASP A 143 -114.55 -123.04 REMARK 500 HIS A 168 -57.79 75.03 REMARK 500 HIS A 219 -127.24 -150.96 REMARK 500 GLN A 251 55.84 -113.44 REMARK 500 TYR A 378 -52.00 -155.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 245 ND1 REMARK 620 2 CYS A 255 SG 104.1 REMARK 620 3 CYS A 257 SG 110.1 103.7 REMARK 620 4 CYS A 262 SG 122.0 107.3 108.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC26690 RELATED DB: TARGETDB DBREF 1Z05 A 1 405 UNP Q9KQJ1 Q9KQJ1_VIBCH 1 405 SEQADV 1Z05 MET A -23 UNP Q9KQJ1 INITIATING METHIONINE SEQADV 1Z05 HIS A -22 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 HIS A -21 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 HIS A -20 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 HIS A -19 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 HIS A -18 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 HIS A -17 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 SER A -16 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 SER A -15 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 GLY A -14 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 VAL A -13 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 ASP A -12 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 LEU A -11 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 GLY A -10 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 THR A -9 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 GLU A -8 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 ASN A -7 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 LEU A -6 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 TYR A -5 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 PHE A -4 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 GLN A -3 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 SER A -2 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 ASN A -1 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 ALA A 0 UNP Q9KQJ1 CLONING ARTIFACT SEQRES 1 A 429 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 429 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET TYR SEQRES 3 A 429 MET ALA GLN PRO GLY HIS ILE ASP HIS ILE LYS GLN ILE SEQRES 4 A 429 ASN ALA GLY ARG VAL TYR LYS LEU ILE ASP GLN LYS GLY SEQRES 5 A 429 PRO ILE SER ARG ILE ASP LEU SER LYS GLU SER GLU LEU SEQRES 6 A 429 ALA PRO ALA SER ILE THR LYS ILE THR ARG GLU LEU ILE SEQRES 7 A 429 ASP ALA HIS LEU ILE HIS GLU THR THR VAL GLN GLU ALA SEQRES 8 A 429 ILE SER ARG GLY ARG PRO ALA VAL GLY LEU GLN THR ASN SEQRES 9 A 429 ASN LEU GLY TRP GLN PHE LEU SER MET ARG LEU GLY ARG SEQRES 10 A 429 GLY TYR LEU THR ILE ALA LEU HIS GLU LEU GLY GLY GLU SEQRES 11 A 429 VAL LEU ILE ASP THR LYS ILE ASP ILE HIS GLU ILE ASP SEQRES 12 A 429 GLN ASP ASP VAL LEU ALA ARG LEU LEU PHE GLU ILE GLU SEQRES 13 A 429 GLU PHE PHE GLN THR TYR ALA ALA GLN LEU ASP ARG VAL SEQRES 14 A 429 THR SER ILE ALA ILE THR LEU PRO GLY LEU VAL ASN SER SEQRES 15 A 429 GLU GLN GLY ILE VAL LEU GLN MET PRO HIS TYR ASN VAL SEQRES 16 A 429 LYS ASN LEU ALA LEU GLY PRO GLU ILE TYR LYS ALA THR SEQRES 17 A 429 GLY LEU PRO VAL PHE VAL ALA ASN ASP THR ARG ALA TRP SEQRES 18 A 429 ALA LEU ALA GLU LYS LEU PHE GLY HIS SER GLN ASP VAL SEQRES 19 A 429 ASP ASN SER VAL LEU ILE SER ILE HIS HIS GLY LEU GLY SEQRES 20 A 429 ALA GLY ILE VAL LEU ASP GLY ARG VAL LEU GLN GLY ARG SEQRES 21 A 429 HIS GLY ASN ILE GLY GLU LEU GLY HIS ILE GLN ILE ASP SEQRES 22 A 429 PRO GLN GLY LYS ARG CYS HIS CYS GLY ASN TYR GLY CYS SEQRES 23 A 429 LEU GLU THR VAL ALA SER SER GLN ALA ILE ARG ASP GLN SEQRES 24 A 429 VAL THR ALA ARG ILE GLN ALA GLY GLU PRO SER CYS LEU SEQRES 25 A 429 ALA THR VAL GLU GLU ILE SER ILE GLU ASP ILE CYS ALA SEQRES 26 A 429 ALA ALA ALA ASP GLY ASP PRO LEU ALA VAL ASP VAL ILE SEQRES 27 A 429 GLN GLN LEU GLY ARG TYR LEU GLY ALA ALA ILE ALA ILE SEQRES 28 A 429 VAL ILE ASN LEU PHE ASN PRO GLU LYS ILE LEU ILE GLY SEQRES 29 A 429 GLY VAL ILE ASN GLN ALA LYS SER ILE LEU TYR PRO SER SEQRES 30 A 429 ILE GLU GLN CYS ILE ARG GLU GLN SER LEU PRO VAL TYR SEQRES 31 A 429 HIS GLN ASP LEU LYS LEU VAL GLU SER ARG PHE TYR LYS SEQRES 32 A 429 GLN ALA THR MET PRO GLY ALA ALA LEU ILE LYS GLN ALA SEQRES 33 A 429 LEU TYR ASP GLY LEU LEU LEU MET LYS VAL VAL GLU GLY HET ZN A 406 1 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET SO4 A 412 5 HET BME A 413 4 HET GOL A 414 6 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 BME C2 H6 O S FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *396(H2 O) HELIX 1 1 ASP A 10 GLY A 28 1 19 HELIX 2 2 SER A 31 GLU A 40 1 10 HELIX 3 3 ALA A 42 ALA A 56 1 15 HELIX 4 4 THR A 63 GLY A 71 1 9 HELIX 5 5 ASP A 119 TYR A 138 1 20 HELIX 6 6 ALA A 175 GLY A 185 1 11 HELIX 7 7 ASP A 193 GLY A 205 1 13 HELIX 8 8 LEU A 263 SER A 268 1 6 HELIX 9 9 SER A 268 ALA A 282 1 15 HELIX 10 10 SER A 295 ASP A 305 1 11 HELIX 11 11 ASP A 307 ASN A 333 1 27 HELIX 12 12 GLY A 341 GLN A 345 5 5 HELIX 13 13 ALA A 346 SER A 362 1 17 HELIX 14 14 LEU A 363 GLN A 368 1 6 HELIX 15 15 THR A 382 ASP A 395 1 14 HELIX 16 16 GLY A 396 GLY A 405 1 10 SHEET 1 A 2 ILE A 59 THR A 62 0 SHEET 2 A 2 VAL A 75 THR A 79 -1 O GLN A 78 N HIS A 60 SHEET 1 B 5 VAL A 107 ASP A 114 0 SHEET 2 B 5 TYR A 95 GLU A 102 -1 N LEU A 100 O LEU A 108 SHEET 3 B 5 TRP A 84 GLY A 92 -1 N PHE A 86 O HIS A 101 SHEET 4 B 5 ARG A 144 LEU A 152 1 O ALA A 149 N MET A 89 SHEET 5 B 5 VAL A 188 ASN A 192 1 O PHE A 189 N ILE A 150 SHEET 1 C 2 LEU A 155 ASN A 157 0 SHEET 2 C 2 ILE A 162 GLN A 165 -1 O ILE A 162 N ASN A 157 SHEET 1 D 5 ARG A 231 VAL A 232 0 SHEET 2 D 5 LEU A 222 LEU A 228 -1 N LEU A 228 O ARG A 231 SHEET 3 D 5 SER A 213 ILE A 218 -1 N SER A 217 O GLY A 223 SHEET 4 D 5 LYS A 336 GLY A 340 1 O LEU A 338 N ILE A 216 SHEET 5 D 5 LYS A 371 GLU A 374 1 O VAL A 373 N ILE A 337 LINK SG ACYS A 357 S2 ABME A 413 1555 1555 1.94 LINK ZN ZN A 406 ND1 HIS A 245 1555 1555 2.13 LINK ZN ZN A 406 SG CYS A 255 1555 1555 2.46 LINK ZN ZN A 406 SG CYS A 257 1555 1555 2.32 LINK ZN ZN A 406 SG CYS A 262 1555 1555 2.27 CISPEP 1 GLY A 28 PRO A 29 0 -0.20 SITE 1 AC1 4 HIS A 245 CYS A 255 CYS A 257 CYS A 262 SITE 1 AC2 8 ARG A 90 GLY A 92 ARG A 93 TYR A 95 SITE 2 AC2 8 HIS A 219 HIS A 220 HOH A 521 HOH A 735 SITE 1 AC3 8 ARG A 93 HIS A 219 HIS A 220 GLY A 221 SITE 2 AC3 8 HOH A 437 HOH A 520 HOH A 722 HOH A 802 SITE 1 AC4 5 GLU A 355 ILE A 358 ARG A 359 HIS A 367 SITE 2 AC4 5 LEU A 370 SITE 1 AC5 6 PRO A 167 HIS A 168 HOH A 714 HOH A 716 SITE 2 AC5 6 HOH A 718 HOH A 775 SITE 1 AC6 4 THR A 47 ARG A 51 HOH A 509 HOH A 739 SITE 1 AC7 5 GLN A 316 ARG A 319 TYR A 320 HOH A 776 SITE 2 AC7 5 HOH A 777 SITE 1 AC8 7 GLN A 356 CYS A 357 GLU A 360 HOH A 454 SITE 2 AC8 7 HOH A 737 HOH A 749 HOH A 750 SITE 1 AC9 7 GLN A 345 ALA A 346 LYS A 347 SER A 348 SITE 2 AC9 7 HOH A 772 HOH A 785 HOH A 792 CRYST1 93.719 93.719 118.291 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008454 0.00000 MASTER 429 0 9 16 14 0 16 6 0 0 0 33 END