HEADER ELECTRON TRANSPORT 28-FEB-05 1YZA TITLE THE SOLUTION STRUCTURE OF A REDESIGNED APOCYTOCHROME B562 TITLE 2 (RD-APOCYT B562) WITH THE N-TERMINAL HELIX UNFOLDED COMPND MOL_ID: 1; COMPND 2 MOLECULE: REDESIGNED APO-CYTOCHROME B562; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS CELLS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS RD-APOCYT B562, PROTEIN FOLDING, HIDDEN FOLDING KEYWDS 2 INTERMEDIATE, NON-NATIVE, HYDROPHOBIC-INTERACTIONS, KEYWDS 3 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 4 BERKELEY STRUCTURAL GENOMICS CENTER, BSGC, ELECTRON KEYWDS 5 TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.FENG,T.TAKEI,R.LIPSITZ,N.TJANDRA,Y.BAI,BERKELEY AUTHOR 2 STRUCTURAL GENOMICS CENTER (BSGC) REVDAT 2 24-FEB-09 1YZA 1 VERSN REVDAT 1 28-AUG-05 1YZA 0 JRNL AUTH H.FENG,T.TAKEI,R.LIPSITZ,N.TJANDRA,Y.BAI JRNL TITL SPECIFIC NON-NATIVE HYDROPHOBIC INTERACTIONS IN A JRNL TITL 2 HIDDEN FOLDING INTERMEDIATE: IMPLICATION FOR JRNL TITL 3 PROTEIN FOLDING JRNL REF BIOCHEMISTRY V. 42 12461 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14580191 JRNL DOI 10.1021/BI035561S REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH-2.9 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YZA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032099. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.84 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : NULL; NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D HSQC, 3D_15N-SEPARATED_ REMARK 210 NOESY, 3D_13C-SEPARATED_NOESY, REMARK 210 HNHA, 3D HNCACB, 3D CBCACONH,, REMARK 210 D HAHBCONH, 3D HNCO, 2D NOESY, REMARK 210 2D RESIDUAL DIPOLAR EXPTS REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH-2.9, NMRPIPE 5.0.4 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING MOLECULAR DYNAMICS REMARK 210 MATRIX RELAXATION TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 3 15.86 -152.85 REMARK 500 1 GLU A 4 56.74 -141.95 REMARK 500 1 ASP A 5 75.78 -152.91 REMARK 500 1 ASN A 6 69.20 -157.34 REMARK 500 1 GLU A 8 -88.46 -71.04 REMARK 500 1 THR A 9 -26.91 -159.17 REMARK 500 1 ASP A 12 -61.76 64.31 REMARK 500 1 LYS A 15 -133.89 -158.26 REMARK 500 1 GLU A 18 21.05 -75.92 REMARK 500 1 LYS A 19 -155.44 29.95 REMARK 500 1 ASP A 21 -48.53 -144.33 REMARK 500 1 ASN A 22 -107.52 -111.29 REMARK 500 1 LYS A 42 66.07 -158.86 REMARK 500 1 ALA A 43 -58.12 -153.32 REMARK 500 1 PRO A 45 99.31 -35.64 REMARK 500 1 PRO A 46 -101.65 -86.53 REMARK 500 1 LEU A 48 30.35 -81.59 REMARK 500 1 ASP A 50 40.64 -159.27 REMARK 500 1 SER A 52 179.98 -45.39 REMARK 500 1 PRO A 53 39.28 -57.73 REMARK 500 1 ASP A 54 -63.37 -102.68 REMARK 500 1 PRO A 56 9.45 -56.08 REMARK 500 1 PHE A 61 -70.16 -74.42 REMARK 500 1 LYS A 83 142.76 -17.80 REMARK 500 1 GLN A 93 -19.94 -47.78 REMARK 500 2 LEU A 3 -14.85 -148.86 REMARK 500 2 ASN A 6 -77.57 -158.71 REMARK 500 2 ASP A 7 -77.60 -71.99 REMARK 500 2 GLU A 8 -58.13 -170.44 REMARK 500 2 THR A 9 -24.54 -149.54 REMARK 500 2 LYS A 15 37.06 -152.17 REMARK 500 2 GLU A 18 -17.06 -168.26 REMARK 500 2 LYS A 19 152.50 58.50 REMARK 500 2 ALA A 20 -161.11 -76.05 REMARK 500 2 ASP A 21 -81.65 -160.66 REMARK 500 2 ASN A 22 -89.57 -109.66 REMARK 500 2 ARG A 34 -74.13 -39.00 REMARK 500 2 LYS A 42 63.44 -156.70 REMARK 500 2 ALA A 43 -55.33 -159.25 REMARK 500 2 THR A 44 78.46 -109.23 REMARK 500 2 PRO A 45 98.18 -34.06 REMARK 500 2 PRO A 46 -101.64 -86.46 REMARK 500 2 LEU A 48 21.86 -77.82 REMARK 500 2 ASP A 50 43.45 -159.02 REMARK 500 2 SER A 52 179.78 -45.82 REMARK 500 2 PRO A 53 36.00 -59.23 REMARK 500 2 ASP A 54 -60.11 -104.47 REMARK 500 2 PRO A 56 40.60 -59.09 REMARK 500 2 GLU A 57 -74.30 -76.20 REMARK 500 3 LEU A 3 16.99 -162.45 REMARK 500 3 GLU A 4 -34.22 -143.17 REMARK 500 3 ASP A 7 80.08 -66.96 REMARK 500 3 GLU A 8 -114.81 50.58 REMARK 500 3 THR A 9 -33.71 -158.25 REMARK 500 3 ASN A 11 -114.03 -159.04 REMARK 500 3 ASP A 12 -0.65 60.34 REMARK 500 3 LYS A 15 -143.35 -155.80 REMARK 500 3 GLU A 18 75.60 -162.68 REMARK 500 3 LYS A 19 -109.77 -150.55 REMARK 500 3 ALA A 20 -105.37 -142.38 REMARK 500 3 ASP A 21 -87.55 -148.33 REMARK 500 3 ASN A 22 -113.65 -115.66 REMARK 500 3 LYS A 42 58.48 -153.09 REMARK 500 3 ALA A 43 -54.36 -160.62 REMARK 500 3 PRO A 45 100.62 -37.11 REMARK 500 3 PRO A 46 -103.64 -79.28 REMARK 500 3 LEU A 48 40.20 -76.45 REMARK 500 3 ASP A 50 51.91 -159.03 REMARK 500 3 SER A 52 177.93 -40.23 REMARK 500 3 PRO A 53 46.82 -54.94 REMARK 500 3 ASP A 54 -65.00 -107.77 REMARK 500 3 PRO A 56 38.85 -62.46 REMARK 500 3 LYS A 59 -75.08 -53.05 REMARK 500 3 LEU A 94 -70.03 -80.71 REMARK 500 3 LYS A 95 -28.87 -39.74 REMARK 500 4 GLU A 4 -104.38 -158.60 REMARK 500 4 ASN A 6 -81.78 -158.67 REMARK 500 4 GLU A 8 135.89 -173.09 REMARK 500 4 THR A 9 -38.99 -159.25 REMARK 500 4 ASN A 13 20.02 -158.18 REMARK 500 4 LYS A 15 40.02 -146.17 REMARK 500 4 GLU A 18 97.44 -59.94 REMARK 500 4 LYS A 19 -154.17 29.60 REMARK 500 4 ALA A 20 -82.06 -155.40 REMARK 500 4 ASP A 21 -61.90 -160.55 REMARK 500 4 ASN A 22 -79.05 -110.32 REMARK 500 4 LYS A 42 61.68 -158.85 REMARK 500 4 ALA A 43 -56.62 -159.36 REMARK 500 4 THR A 44 78.57 -112.40 REMARK 500 4 PRO A 45 99.72 -37.06 REMARK 500 4 PRO A 46 -103.47 -88.24 REMARK 500 4 LEU A 48 31.08 -77.23 REMARK 500 4 ASP A 50 52.56 -158.90 REMARK 500 4 LYS A 51 41.96 -141.27 REMARK 500 4 SER A 52 178.97 -43.48 REMARK 500 4 PRO A 53 45.09 -58.78 REMARK 500 4 PRO A 56 19.57 -57.21 REMARK 500 5 ASP A 2 26.08 -78.81 REMARK 500 5 LEU A 3 -72.12 61.55 REMARK 500 5 ASN A 6 -72.69 -158.72 REMARK 500 5 GLU A 8 88.05 -68.82 REMARK 500 5 THR A 9 -72.13 -159.19 REMARK 500 5 LYS A 15 -119.63 -78.53 REMARK 500 5 GLU A 18 170.16 50.61 REMARK 500 5 ASP A 21 -70.33 -158.88 REMARK 500 5 ASN A 22 -114.25 -104.16 REMARK 500 5 LYS A 42 49.15 -152.65 REMARK 500 5 ALA A 43 -56.29 -158.00 REMARK 500 5 THR A 44 76.70 -108.76 REMARK 500 5 PRO A 45 97.96 -32.94 REMARK 500 5 PRO A 46 -101.13 -79.48 REMARK 500 5 ASP A 50 54.75 -156.97 REMARK 500 5 LYS A 51 35.18 -157.45 REMARK 500 5 SER A 52 168.53 -36.33 REMARK 500 5 PRO A 53 49.75 -40.93 REMARK 500 5 ASP A 54 -70.71 -105.17 REMARK 500 5 PRO A 56 8.28 -54.36 REMARK 500 5 LYS A 83 164.58 -31.09 REMARK 500 6 ASP A 2 -56.98 -158.45 REMARK 500 6 LEU A 3 -1.39 -172.74 REMARK 500 6 ASN A 6 88.32 -158.61 REMARK 500 6 ASP A 7 95.63 52.46 REMARK 500 6 ASN A 13 53.47 -158.76 REMARK 500 6 LYS A 19 -132.84 -157.86 REMARK 500 6 ALA A 20 -164.72 -76.68 REMARK 500 6 ASP A 21 -80.10 -159.40 REMARK 500 6 ASN A 22 -110.06 -98.89 REMARK 500 6 ARG A 34 -72.95 -44.23 REMARK 500 6 LYS A 42 51.33 -145.06 REMARK 500 6 ALA A 43 -66.38 -140.73 REMARK 500 6 PRO A 45 98.50 -33.82 REMARK 500 6 PRO A 46 -105.04 -83.69 REMARK 500 6 LEU A 48 38.51 -77.33 REMARK 500 6 ASP A 50 56.60 -158.43 REMARK 500 6 SER A 52 159.07 -32.83 REMARK 500 6 PRO A 53 41.78 -41.77 REMARK 500 6 ASP A 54 -65.77 -104.88 REMARK 500 6 PRO A 56 21.20 -59.50 REMARK 500 7 LEU A 3 -12.84 -169.09 REMARK 500 7 GLU A 4 32.75 -79.12 REMARK 500 7 ASN A 6 32.40 -153.82 REMARK 500 7 GLU A 8 166.64 -49.62 REMARK 500 7 THR A 9 -39.85 -146.47 REMARK 500 7 ASN A 13 58.57 -148.89 REMARK 500 7 LYS A 15 66.34 -158.99 REMARK 500 7 GLU A 18 169.20 -47.55 REMARK 500 7 ALA A 20 -115.92 -157.92 REMARK 500 7 ASP A 21 -33.68 -159.91 REMARK 500 7 ASN A 22 -93.70 -100.20 REMARK 500 7 ALA A 24 -77.92 -59.75 REMARK 500 7 ARG A 34 -73.69 -38.92 REMARK 500 7 LYS A 42 -0.01 -149.98 REMARK 500 7 THR A 44 87.95 -158.99 REMARK 500 7 PRO A 45 102.14 -40.15 REMARK 500 7 PRO A 46 -100.20 -82.96 REMARK 500 7 LEU A 48 35.24 -77.59 REMARK 500 7 ASP A 50 43.73 -158.57 REMARK 500 7 SER A 52 -179.91 -46.11 REMARK 500 7 PRO A 53 39.68 -57.16 REMARK 500 7 ASP A 54 -66.51 -103.45 REMARK 500 7 PRO A 56 10.98 -56.46 REMARK 500 8 LEU A 3 44.16 -153.98 REMARK 500 8 GLU A 4 -22.49 -157.22 REMARK 500 8 ASN A 6 -82.63 -159.06 REMARK 500 8 ASP A 7 95.39 -64.54 REMARK 500 8 GLU A 8 -87.82 -70.15 REMARK 500 8 THR A 9 -56.59 -158.85 REMARK 500 8 ASN A 13 -54.89 -144.71 REMARK 500 8 LYS A 15 -119.41 -81.19 REMARK 500 8 GLU A 18 167.26 55.72 REMARK 500 8 LYS A 19 -169.28 -170.55 REMARK 500 8 ASP A 21 -36.80 -160.05 REMARK 500 8 ASN A 22 -113.86 -111.40 REMARK 500 8 LYS A 42 34.45 -149.03 REMARK 500 8 ALA A 43 -53.61 -133.74 REMARK 500 8 THR A 44 79.27 -109.20 REMARK 500 8 PRO A 45 98.84 -34.90 REMARK 500 8 PRO A 46 -101.53 -87.47 REMARK 500 8 LEU A 48 21.55 -77.15 REMARK 500 8 ASP A 50 47.01 -159.91 REMARK 500 8 LYS A 51 46.44 -142.07 REMARK 500 8 SER A 52 -179.41 -48.91 REMARK 500 8 PRO A 53 38.59 -60.77 REMARK 500 8 ASP A 54 -66.63 -105.02 REMARK 500 8 PRO A 56 40.67 -64.05 REMARK 500 8 PHE A 61 -70.67 -65.64 REMARK 500 8 LYS A 83 140.81 -17.38 REMARK 500 9 LEU A 3 3.43 -153.41 REMARK 500 9 GLU A 4 -2.34 -146.84 REMARK 500 9 ASP A 7 26.81 41.82 REMARK 500 9 GLU A 8 -151.52 56.30 REMARK 500 9 THR A 9 -49.29 -158.57 REMARK 500 9 LYS A 15 42.34 -99.81 REMARK 500 9 LYS A 19 117.10 77.62 REMARK 500 9 ASP A 21 -78.03 -119.53 REMARK 500 9 ASN A 22 -97.87 -100.51 REMARK 500 9 ARG A 34 -72.36 -34.60 REMARK 500 9 LYS A 42 4.30 -152.43 REMARK 500 9 THR A 44 83.67 -160.38 REMARK 500 9 PRO A 45 98.97 -36.91 REMARK 500 9 PRO A 46 -101.41 -88.65 REMARK 500 9 LEU A 48 35.09 -78.21 REMARK 500 9 ASP A 50 52.68 -158.63 REMARK 500 9 SER A 52 178.78 -46.64 REMARK 500 9 PRO A 53 35.65 -59.64 REMARK 500 9 PRO A 56 -9.62 -43.57 REMARK 500 9 GLU A 57 -55.68 -22.38 REMARK 500 10 GLU A 4 61.92 -160.91 REMARK 500 10 ASP A 7 72.89 41.10 REMARK 500 10 THR A 9 -83.64 -154.02 REMARK 500 10 ASP A 12 -124.57 -71.96 REMARK 500 10 ASN A 13 -54.33 -158.32 REMARK 500 10 LYS A 15 61.73 -158.97 REMARK 500 10 GLU A 18 144.02 59.76 REMARK 500 10 ALA A 20 36.24 -159.45 REMARK 500 10 ASP A 21 -25.69 -155.48 REMARK 500 10 ASN A 22 -106.47 -102.45 REMARK 500 10 LYS A 42 49.08 -146.80 REMARK 500 10 ALA A 43 -55.50 -151.56 REMARK 500 10 PRO A 45 99.76 -35.66 REMARK 500 10 PRO A 46 -102.74 -84.10 REMARK 500 10 ASP A 50 52.34 -159.41 REMARK 500 10 LYS A 51 54.34 -157.29 REMARK 500 10 SER A 52 -176.98 -45.58 REMARK 500 10 PRO A 53 41.48 -55.41 REMARK 500 10 ASP A 54 -67.03 -102.01 REMARK 500 10 PRO A 56 17.91 -57.33 REMARK 500 10 LYS A 83 153.94 -21.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YZC RELATED DB: PDB REMARK 900 RD-APOCYT B562 INTERMEDIATES WITH THE N- AND A PART OF THE REMARK 900 C-TERMINAL HELICES UNFOLDED DBREF 1YZA A 1 106 PDB 1YZA 1YZA 1 106 SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN ASP GLU THR GLY ASN ASP ASN SEQRES 2 A 106 GLY LYS GLY GLY GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 4 A 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 106 PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE SEQRES 6 A 106 ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU SEQRES 7 A 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 A 106 GLU GLN LEU LYS THR THR ILE ARG ALA TYR ASN GLN LYS SEQRES 9 A 106 TYR GLY HELIX 1 1 ASN A 22 ALA A 43 1 22 HELIX 2 2 PRO A 46 LYS A 51 5 6 HELIX 3 3 PRO A 56 GLU A 81 1 26 HELIX 4 4 LYS A 83 GLY A 106 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 302 0 0 4 0 0 0 6 0 0 0 9 END