HEADER VIRAL PROTEIN 11-FEB-05 1YU2 TITLE MAJOR TROPISM DETERMINANT M1 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR TROPISM DETERMINANT (MTD-M1); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PHAGE BMP-1; SOURCE 3 ORGANISM_TAXID: 263374; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS C-TYPE LECTIN, BETA SANDWICH, BETA PRISM, VARIABILITY, DIVERSITY- KEYWDS 2 GENERATING RETROELEMENT, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MCMAHON,J.L.MILLER,J.A.LAWTON,P.GHOSH REVDAT 4 13-JUL-11 1YU2 1 VERSN REVDAT 3 24-FEB-09 1YU2 1 VERSN REVDAT 2 18-OCT-05 1YU2 1 JRNL REVDAT 1 20-SEP-05 1YU2 0 JRNL AUTH S.A.MCMAHON,J.L.MILLER,J.A.LAWTON,D.E.KERKOW,A.HODES, JRNL AUTH 2 M.A.MARTI-RENOM,S.DOULATOV,E.NARAYANAN,A.SALI,J.F.MILLER, JRNL AUTH 3 P.GHOSH JRNL TITL THE C-TYPE LECTIN FOLD AS AN EVOLUTIONARY SOLUTION FOR JRNL TITL 2 MASSIVE SEQUENCE VARIATION JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 886 2005 JRNL REFN ISSN 1545-9993 JRNL PMID 16170324 JRNL DOI 10.1038/NSMB992 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 42618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2147 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2936 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.963 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2840 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2419 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3875 ; 0.986 ; 1.903 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5604 ; 0.761 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 5.946 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3315 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 620 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 520 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2797 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1562 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 273 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 126 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.085 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1849 ; 0.319 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2932 ; 0.608 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 991 ; 0.856 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 943 ; 1.437 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YU2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB031922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5479 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42618 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1YU0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ISOPROPANOL, SODIUM CITRATE, HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.57300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.57300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.57300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM: -Y, X- REMARK 300 Y, Z AND -X+Y, -X, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 93.53400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 46.76700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 81.00282 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 520 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 572 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 637 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 -37.65 -140.70 REMARK 500 ALA A 152 -121.04 -144.81 REMARK 500 ASN A 157 -168.24 -108.64 REMARK 500 PHE A 172 88.63 -160.35 REMARK 500 ASN A 199 42.26 -91.64 REMARK 500 ALA A 217 78.93 -101.40 REMARK 500 ASN A 311 33.25 -98.13 REMARK 500 THR A 348 -118.20 34.44 REMARK 500 SER A 365 65.89 -151.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 552 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A 677 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 683 DISTANCE = 5.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 313 O REMARK 620 2 HOH A 485 O 93.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YU0 RELATED DB: PDB REMARK 900 RELATED ID: 1YU1 RELATED DB: PDB REMARK 900 RELATED ID: 1YU3 RELATED DB: PDB REMARK 900 RELATED ID: 1YU4 RELATED DB: PDB DBREF 1YU2 A 1 381 UNP Q775D6 Q775D6_9CAUD 1 381 SEQRES 1 A 381 MET SER THR ALA VAL GLN PHE ARG GLY GLY THR THR ALA SEQRES 2 A 381 GLN HIS ALA THR PHE THR GLY ALA ALA ARG GLU ILE THR SEQRES 3 A 381 VAL ASP THR ASP LYS ASN THR VAL VAL VAL HIS ASP GLY SEQRES 4 A 381 ALA THR ALA GLY GLY PHE PRO LEU ALA ARG HIS ASP LEU SEQRES 5 A 381 VAL LYS THR ALA PHE ILE LYS ALA ASP LYS SER ALA VAL SEQRES 6 A 381 ALA PHE THR ARG THR GLY ASN ALA THR ALA SER ILE LYS SEQRES 7 A 381 ALA GLY THR ILE VAL GLU VAL ASN GLY LYS LEU VAL GLN SEQRES 8 A 381 PHE THR ALA ASP THR ALA ILE THR MET PRO ALA LEU THR SEQRES 9 A 381 ALA GLY THR ASP TYR ALA ILE TYR VAL CYS ASP ASP GLY SEQRES 10 A 381 THR VAL ARG ALA ASP SER ASN PHE SER ALA PRO THR GLY SEQRES 11 A 381 TYR THR SER THR THR ALA ARG LYS VAL GLY GLY PHE HIS SEQRES 12 A 381 TYR ALA PRO GLY SER ASN ALA ALA ALA GLN ALA GLY GLY SEQRES 13 A 381 ASN THR THR ALA GLN ILE ASN GLU TYR SER LEU TRP ASP SEQRES 14 A 381 ILE LYS PHE ARG PRO ALA ALA LEU ASP PRO ARG GLY MET SEQRES 15 A 381 THR LEU VAL ALA GLY ALA PHE TRP ALA ASP ILE TYR LEU SEQRES 16 A 381 LEU GLY VAL ASN HIS LEU THR ASP GLY THR SER LYS TYR SEQRES 17 A 381 ASN VAL THR ILE ALA ASP GLY SER ALA SER PRO LYS LYS SEQRES 18 A 381 SER THR LYS PHE GLY GLY ASP GLY SER ALA ALA TYR SER SEQRES 19 A 381 ASP GLY ALA TRP TYR ASN PHE ALA GLU VAL MET THR HIS SEQRES 20 A 381 HIS GLY LYS ARG LEU PRO ASN TYR ASN GLU PHE GLN ALA SEQRES 21 A 381 LEU ALA PHE GLY THR THR GLU ALA THR SER SER GLY GLY SEQRES 22 A 381 THR ASP VAL PRO THR THR GLY VAL ASN GLY THR GLY ALA SEQRES 23 A 381 THR SER ALA TRP ASN ILE PHE THR SER LYS TRP GLY VAL SEQRES 24 A 381 VAL GLN ALA SER GLY CYS LEU TRP THR TRP GLY ASN GLU SEQRES 25 A 381 PHE GLY GLY VAL ASN GLY ALA SER GLU TYR THR ALA ASN SEQRES 26 A 381 THR GLY GLY ARG GLY SER VAL TYR ALA GLN PRO ALA ALA SEQRES 27 A 381 ALA LEU PHE GLY GLY SER TRP HIS TYR THR SER ASN SER SEQRES 28 A 381 GLY SER ARG ALA ALA TYR TRP TYR SER GLY PRO SER ASN SEQRES 29 A 381 SER PRO ALA ASN ILE GLY ALA ARG GLY VAL CYS ASP HIS SEQRES 30 A 381 LEU ILE LEU GLU HET MG A 401 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *352(H2 O) HELIX 1 1 THR A 11 THR A 17 1 7 HELIX 2 2 ARG A 49 LYS A 54 5 6 HELIX 3 3 GLU A 164 LEU A 167 5 4 HELIX 4 4 ASN A 199 GLY A 204 1 6 HELIX 5 5 ALA A 237 HIS A 248 1 12 HELIX 6 6 ASN A 254 PHE A 263 1 10 HELIX 7 7 ALA A 289 THR A 294 5 6 HELIX 8 8 TYR A 347 SER A 351 5 5 SHEET 1 A 4 GLY A 9 GLY A 10 0 SHEET 2 A 4 ILE A 25 ASP A 28 1 O VAL A 27 N GLY A 10 SHEET 3 A 4 THR A 33 VAL A 36 -1 O VAL A 35 N THR A 26 SHEET 4 A 4 PHE A 45 PRO A 46 -1 O PHE A 45 N VAL A 36 SHEET 1 B 3 PHE A 57 ILE A 58 0 SHEET 2 B 3 THR A 81 VAL A 85 -1 O ILE A 82 N ILE A 58 SHEET 3 B 3 LYS A 88 PHE A 92 -1 O VAL A 90 N VAL A 83 SHEET 1 C 3 PHE A 67 GLY A 71 0 SHEET 2 C 3 THR A 74 ILE A 77 -1 O SER A 76 N THR A 68 SHEET 3 C 3 THR A 96 ALA A 97 -1 O THR A 96 N ILE A 77 SHEET 1 D 4 VAL A 119 ASP A 122 0 SHEET 2 D 4 THR A 107 CYS A 114 -1 N TYR A 112 O ARG A 120 SHEET 3 D 4 ALA A 136 ALA A 145 -1 O TYR A 144 N THR A 107 SHEET 4 D 4 GLN A 161 ILE A 162 -1 O GLN A 161 N ALA A 145 SHEET 1 E 4 VAL A 119 ASP A 122 0 SHEET 2 E 4 THR A 107 CYS A 114 -1 N TYR A 112 O ARG A 120 SHEET 3 E 4 ALA A 136 ALA A 145 -1 O TYR A 144 N THR A 107 SHEET 4 E 4 TRP A 168 ASP A 169 -1 O TRP A 168 N GLY A 141 SHEET 1 F 4 PHE A 172 PRO A 174 0 SHEET 2 F 4 VAL A 374 ILE A 379 -1 O LEU A 378 N ARG A 173 SHEET 3 F 4 PHE A 189 ASP A 192 -1 N TRP A 190 O CYS A 375 SHEET 4 F 4 MET A 182 VAL A 185 -1 N VAL A 185 O PHE A 189 SHEET 1 G 4 ALA A 356 TYR A 357 0 SHEET 2 G 4 PRO A 336 PHE A 341 -1 N LEU A 340 O TYR A 357 SHEET 3 G 4 TRP A 307 ASN A 317 -1 N GLY A 310 O ALA A 339 SHEET 4 G 4 ILE A 369 GLY A 370 1 O GLY A 370 N TRP A 307 LINK MG MG A 401 O PHE A 313 1555 1555 2.28 LINK MG MG A 401 O HOH A 485 1555 1555 2.47 LINK MG MG A 401 O HOH A 485 1555 2655 2.47 LINK MG MG A 401 O PHE A 313 1555 2655 2.28 LINK MG MG A 401 O HOH A 485 1555 3665 2.47 LINK MG MG A 401 O PHE A 313 1555 3665 2.28 SITE 1 AC1 2 PHE A 313 HOH A 485 CRYST1 93.534 93.534 103.146 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010691 0.006173 0.000000 0.00000 SCALE2 0.000000 0.012345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009695 0.00000 MASTER 335 0 1 8 26 0 1 6 0 0 0 30 END