HEADER LYASE 08-FEB-05 1YSL TITLE CRYSTAL STRUCTURE OF HMG-COA SYNTHASE FROM ENTEROCOCCUS FAECALIS WITH TITLE 2 ACETOACETYL-COA LIGAND. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMG-COA SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.3.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HMG-COA SYNTHASE; COMPND 8 CHAIN: B; COMPND 9 EC: 4.1.3.5; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21[DE3]; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 11 ORGANISM_TAXID: 1351; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21[DE3]; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS THIOLASE FAMILY, COENZYMEA, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.N.STEUSSY,A.A.VARTIA,J.W.BURGNER II,A.SUTHERLIN,V.W.RODWELL, AUTHOR 2 C.V.STAUFFACHER REVDAT 4 16-NOV-11 1YSL 1 HETATM REVDAT 3 13-JUL-11 1YSL 1 VERSN REVDAT 2 24-FEB-09 1YSL 1 VERSN REVDAT 1 08-NOV-05 1YSL 0 JRNL AUTH C.N.STEUSSY,A.A.VARTIA,J.W.BURGNER II,A.SUTHERLIN, JRNL AUTH 2 V.W.RODWELL,C.V.STAUFFACHER JRNL TITL X-RAY CRYSTAL STRUCTURES OF HMG-COA SYNTHASE FROM JRNL TITL 2 ENTEROCOCCUS FAECALIS AND A COMPLEX WITH ITS SECOND JRNL TITL 3 SUBSTRATE/INHIBITOR ACETOACETYL-COA. JRNL REF BIOCHEMISTRY V. 44 14256 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16245942 JRNL DOI 10.1021/BI051487X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 63975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2565 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YSL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB031883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : BENT GE(111) MONOCHROMATOR REMARK 200 OPTICS : BENT CONICAL SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63975 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 63975.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1X9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M AMMONIUM SULFATE, 100 MM MES, PH REMARK 280 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.50650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.39950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.50650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.39950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.50650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.39950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.50650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.39950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A HOMODIMER THAT IS BELIEVED REMARK 300 TO BE THE BIOLOGICALLY ACTIVE UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 700 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND THE ACETOACETYL MOLECULE, AAE IS COVALENTLY ATTACHED TO REMARK 400 CYSTEINE B111 WITH 50% OCCUPANCY. THE REMAINING PORTION OF CYSTEINE REMARK 400 B111 IS OXIDIZED TO SULFONATE (CSD). CYSTEINE A 111 IS ENTIRELY REMARK 400 OXIDIZED (CSD). REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 370 NH1 ARG B 382 1.79 REMARK 500 OG SER B 9 O HOH B 797 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 30 9.38 -49.42 REMARK 500 GLU A 109 65.27 -177.80 REMARK 500 ALA A 110 -136.64 50.96 REMARK 500 GLU A 173 41.49 -105.06 REMARK 500 VAL A 273 -53.51 -124.30 REMARK 500 TYR A 277 -111.84 50.74 REMARK 500 THR A 377 -16.25 75.58 REMARK 500 GLU B 109 67.57 -169.80 REMARK 500 ALA B 110 -131.21 44.05 REMARK 500 ILE B 168 -62.93 -120.71 REMARK 500 VAL B 273 -51.29 -124.56 REMARK 500 TYR B 277 -112.28 52.45 REMARK 500 THR B 377 -9.84 75.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 282 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CSD B 111 12.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AAE B 611 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AAE B 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X9E RELATED DB: PDB REMARK 900 NATIVE STRUCTURE OF HMG-COA SYNTHASE FROM ENTEROCOCCUS REMARK 900 FAECALIS DBREF 1YSL A 1 383 GB 9937383 AAG02438 1 383 DBREF 1YSL B 1 383 GB 9937383 AAG02438 1 383 SEQADV 1YSL MET A -18 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY A -17 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER A -16 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -15 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -14 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -13 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -12 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -11 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -10 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER A -9 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER A -8 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY A -7 GB 9937383 EXPRESSION TAG SEQADV 1YSL LEU A -6 GB 9937383 EXPRESSION TAG SEQADV 1YSL VAL A -5 GB 9937383 EXPRESSION TAG SEQADV 1YSL PRO A -4 GB 9937383 EXPRESSION TAG SEQADV 1YSL ARG A -3 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY A -2 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER A -1 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A 0 GB 9937383 EXPRESSION TAG SEQADV 1YSL MET B -18 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY B -17 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER B -16 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -15 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -14 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -13 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -12 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -11 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -10 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER B -9 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER B -8 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY B -7 GB 9937383 EXPRESSION TAG SEQADV 1YSL LEU B -6 GB 9937383 EXPRESSION TAG SEQADV 1YSL VAL B -5 GB 9937383 EXPRESSION TAG SEQADV 1YSL PRO B -4 GB 9937383 EXPRESSION TAG SEQADV 1YSL ARG B -3 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY B -2 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER B -1 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B 0 GB 9937383 EXPRESSION TAG SEQADV 1YSL CSD B 111 GB 9937383 CYS 111 MICROHETEROGENEITY SEQRES 1 A 402 MET GLY SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 402 VAL PRO ARG GLY SER HIS MET THR ILE GLY ILE ASP LYS SEQRES 3 A 402 ILE SER PHE PHE VAL PRO PRO TYR TYR ILE ASP MET THR SEQRES 4 A 402 ALA LEU ALA GLU ALA ARG ASN VAL ASP PRO GLY LYS PHE SEQRES 5 A 402 HIS ILE GLY ILE GLY GLN ASP GLN MET ALA VAL ASN PRO SEQRES 6 A 402 ILE SER GLN ASP ILE VAL THR PHE ALA ALA ASN ALA ALA SEQRES 7 A 402 GLU ALA ILE LEU THR LYS GLU ASP LYS GLU ALA ILE ASP SEQRES 8 A 402 MET VAL ILE VAL GLY THR GLU SER SER ILE ASP GLU SER SEQRES 9 A 402 LYS ALA ALA ALA VAL VAL LEU HIS ARG LEU MET GLY ILE SEQRES 10 A 402 GLN PRO PHE ALA ARG SER PHE GLU ILE LYS GLU ALA CSD SEQRES 11 A 402 TYR GLY ALA THR ALA GLY LEU GLN LEU ALA LYS ASN HIS SEQRES 12 A 402 VAL ALA LEU HIS PRO ASP LYS LYS VAL LEU VAL VAL ALA SEQRES 13 A 402 ALA ASP ILE ALA LYS TYR GLY LEU ASN SER GLY GLY GLU SEQRES 14 A 402 PRO THR GLN GLY ALA GLY ALA VAL ALA MET LEU VAL ALA SEQRES 15 A 402 SER GLU PRO ARG ILE LEU ALA LEU LYS GLU ASP ASN VAL SEQRES 16 A 402 MET LEU THR GLN ASP ILE TYR ASP PHE TRP ARG PRO THR SEQRES 17 A 402 GLY HIS PRO TYR PRO MET VAL ASP GLY PRO LEU SER ASN SEQRES 18 A 402 GLU THR TYR ILE GLN SER PHE ALA GLN VAL TRP ASP GLU SEQRES 19 A 402 HIS LYS LYS ARG THR GLY LEU ASP PHE ALA ASP TYR ASP SEQRES 20 A 402 ALA LEU ALA PHE HIS ILE PRO TYR THR LYS MET GLY LYS SEQRES 21 A 402 LYS ALA LEU LEU ALA LYS ILE SER ASP GLN THR GLU ALA SEQRES 22 A 402 GLU GLN GLU ARG ILE LEU ALA ARG TYR GLU GLU SER ILE SEQRES 23 A 402 ILE TYR SER ARG ARG VAL GLY ASN LEU TYR THR GLY SER SEQRES 24 A 402 LEU TYR LEU GLY LEU ILE SER LEU LEU GLU ASN ALA THR SEQRES 25 A 402 THR LEU THR ALA GLY ASN GLN ILE GLY LEU PHE SER TYR SEQRES 26 A 402 GLY SER GLY ALA VAL ALA GLU PHE PHE THR GLY GLU LEU SEQRES 27 A 402 VAL ALA GLY TYR GLN ASN HIS LEU GLN LYS GLU THR HIS SEQRES 28 A 402 LEU ALA LEU LEU ASP ASN ARG THR GLU LEU SER ILE ALA SEQRES 29 A 402 GLU TYR GLU ALA MET PHE ALA GLU THR LEU ASP THR ASP SEQRES 30 A 402 ILE ASP GLN THR LEU GLU ASP GLU LEU LYS TYR SER ILE SEQRES 31 A 402 SER ALA ILE ASN ASN THR VAL ARG SER TYR ARG ASN SEQRES 1 B 402 MET GLY SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 B 402 VAL PRO ARG GLY SER HIS MET THR ILE GLY ILE ASP LYS SEQRES 3 B 402 ILE SER PHE PHE VAL PRO PRO TYR TYR ILE ASP MET THR SEQRES 4 B 402 ALA LEU ALA GLU ALA ARG ASN VAL ASP PRO GLY LYS PHE SEQRES 5 B 402 HIS ILE GLY ILE GLY GLN ASP GLN MET ALA VAL ASN PRO SEQRES 6 B 402 ILE SER GLN ASP ILE VAL THR PHE ALA ALA ASN ALA ALA SEQRES 7 B 402 GLU ALA ILE LEU THR LYS GLU ASP LYS GLU ALA ILE ASP SEQRES 8 B 402 MET VAL ILE VAL GLY THR GLU SER SER ILE ASP GLU SER SEQRES 9 B 402 LYS ALA ALA ALA VAL VAL LEU HIS ARG LEU MET GLY ILE SEQRES 10 B 402 GLN PRO PHE ALA ARG SER PHE GLU ILE LYS GLU ALA CYS SEQRES 11 B 402 TYR GLY ALA THR ALA GLY LEU GLN LEU ALA LYS ASN HIS SEQRES 12 B 402 VAL ALA LEU HIS PRO ASP LYS LYS VAL LEU VAL VAL ALA SEQRES 13 B 402 ALA ASP ILE ALA LYS TYR GLY LEU ASN SER GLY GLY GLU SEQRES 14 B 402 PRO THR GLN GLY ALA GLY ALA VAL ALA MET LEU VAL ALA SEQRES 15 B 402 SER GLU PRO ARG ILE LEU ALA LEU LYS GLU ASP ASN VAL SEQRES 16 B 402 MET LEU THR GLN ASP ILE TYR ASP PHE TRP ARG PRO THR SEQRES 17 B 402 GLY HIS PRO TYR PRO MET VAL ASP GLY PRO LEU SER ASN SEQRES 18 B 402 GLU THR TYR ILE GLN SER PHE ALA GLN VAL TRP ASP GLU SEQRES 19 B 402 HIS LYS LYS ARG THR GLY LEU ASP PHE ALA ASP TYR ASP SEQRES 20 B 402 ALA LEU ALA PHE HIS ILE PRO TYR THR LYS MET GLY LYS SEQRES 21 B 402 LYS ALA LEU LEU ALA LYS ILE SER ASP GLN THR GLU ALA SEQRES 22 B 402 GLU GLN GLU ARG ILE LEU ALA ARG TYR GLU GLU SER ILE SEQRES 23 B 402 ILE TYR SER ARG ARG VAL GLY ASN LEU TYR THR GLY SER SEQRES 24 B 402 LEU TYR LEU GLY LEU ILE SER LEU LEU GLU ASN ALA THR SEQRES 25 B 402 THR LEU THR ALA GLY ASN GLN ILE GLY LEU PHE SER TYR SEQRES 26 B 402 GLY SER GLY ALA VAL ALA GLU PHE PHE THR GLY GLU LEU SEQRES 27 B 402 VAL ALA GLY TYR GLN ASN HIS LEU GLN LYS GLU THR HIS SEQRES 28 B 402 LEU ALA LEU LEU ASP ASN ARG THR GLU LEU SER ILE ALA SEQRES 29 B 402 GLU TYR GLU ALA MET PHE ALA GLU THR LEU ASP THR ASP SEQRES 30 B 402 ILE ASP GLN THR LEU GLU ASP GLU LEU LYS TYR SER ILE SEQRES 31 B 402 SER ALA ILE ASN ASN THR VAL ARG SER TYR ARG ASN MODRES 1YSL CSD A 111 CYS 3-SULFINOALANINE MODRES 1YSL CSD B 111 CYS 3-SULFINOALANINE HET CSD A 111 16 HET CSD B 111 8 HET SO4 A 602 5 HET GOL A 604 6 HET SO4 B 603 5 HET COA B 601 48 HET AAE B 611 6 HET GOL B 605 6 HETNAM CSD 3-SULFINOALANINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM COA COENZYME A HETNAM AAE ACETOACETIC ACID HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSD 2(C3 H7 N O4 S) FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 COA C21 H36 N7 O16 P3 S FORMUL 7 AAE C4 H6 O3 FORMUL 9 HOH *522(H2 O) HELIX 1 1 MET A 19 ARG A 26 1 8 HELIX 2 2 ASP A 50 ALA A 61 1 12 HELIX 3 3 THR A 64 ALA A 70 1 7 HELIX 4 4 ALA A 87 MET A 96 1 10 HELIX 5 5 GLU A 109 CSD A 111 5 3 HELIX 6 6 TYR A 112 HIS A 128 1 17 HELIX 7 7 GLY A 149 GLN A 153 5 5 HELIX 8 8 ASP A 197 GLY A 221 1 25 HELIX 9 9 ASP A 223 TYR A 227 5 5 HELIX 10 10 TYR A 236 SER A 249 1 14 HELIX 11 11 THR A 252 ILE A 267 1 16 HELIX 12 12 ILE A 268 VAL A 273 5 6 HELIX 13 13 LEU A 276 THR A 278 5 3 HELIX 14 14 GLY A 279 ALA A 292 1 14 HELIX 15 15 GLY A 322 LEU A 327 5 6 HELIX 16 16 GLN A 328 ASN A 338 1 11 HELIX 17 17 SER A 343 GLU A 353 1 11 HELIX 18 18 MET B 19 ARG B 26 1 8 HELIX 19 19 ASP B 29 ILE B 35 1 7 HELIX 20 20 ASP B 50 ALA B 61 1 12 HELIX 21 21 THR B 64 ALA B 70 1 7 HELIX 22 22 ALA B 87 MET B 96 1 10 HELIX 23 23 GLU B 109 CYS B 111 5 3 HELIX 24 24 TYR B 112 HIS B 128 1 17 HELIX 25 25 GLY B 149 GLN B 153 5 5 HELIX 26 26 ASP B 197 GLY B 221 1 25 HELIX 27 27 ASP B 223 TYR B 227 5 5 HELIX 28 28 TYR B 236 SER B 249 1 14 HELIX 29 29 THR B 252 ILE B 267 1 16 HELIX 30 30 TYR B 269 VAL B 273 5 5 HELIX 31 31 LEU B 276 THR B 278 5 3 HELIX 32 32 GLY B 279 ALA B 292 1 14 HELIX 33 33 GLY B 322 HIS B 326 5 5 HELIX 34 34 GLN B 328 ASN B 338 1 11 HELIX 35 35 SER B 343 GLU B 353 1 11 SHEET 1 A16 VAL A 176 THR A 179 0 SHEET 2 A16 VAL A 311 LEU A 319 -1 O ALA A 312 N LEU A 178 SHEET 3 A16 LEU A 169 LEU A 171 -1 N ALA A 170 O GLU A 318 SHEET 4 A16 ILE A 3 PHE A 11 -1 N ILE A 3 O LEU A 171 SHEET 5 A16 GLY A 154 SER A 164 -1 O ALA A 159 N SER A 9 SHEET 6 A16 LYS A 132 ALA A 141 -1 N VAL A 133 O VAL A 162 SHEET 7 A16 ILE A 71 GLY A 77 1 N ILE A 75 O LEU A 134 SHEET 8 A16 ARG A 103 LYS A 108 1 O ILE A 107 N VAL A 76 SHEET 9 A16 ARG B 103 LYS B 108 -1 O LYS B 108 N GLU A 106 SHEET 10 A16 ILE B 71 GLY B 77 1 N VAL B 76 O ILE B 107 SHEET 11 A16 LYS B 132 ALA B 141 1 O VAL B 136 N ILE B 75 SHEET 12 A16 GLY B 154 SER B 164 -1 O VAL B 162 N VAL B 133 SHEET 13 A16 ILE B 3 PHE B 11 -1 N ASP B 6 O LEU B 161 SHEET 14 A16 LEU B 169 LEU B 171 -1 O LEU B 171 N ILE B 3 SHEET 15 A16 VAL B 311 LEU B 319 -1 O GLU B 318 N ALA B 170 SHEET 16 A16 VAL B 176 THR B 179 -1 N LEU B 178 O ALA B 312 SHEET 1 B18 ALA A 229 PHE A 232 0 SHEET 2 B18 GLN A 300 GLY A 307 1 O GLY A 302 N ALA A 231 SHEET 3 B18 VAL A 311 LEU A 319 -1 O GLY A 317 N ILE A 301 SHEET 4 B18 LEU A 169 LEU A 171 -1 N ALA A 170 O GLU A 318 SHEET 5 B18 ILE A 3 PHE A 11 -1 N ILE A 3 O LEU A 171 SHEET 6 B18 GLY A 154 SER A 164 -1 O ALA A 159 N SER A 9 SHEET 7 B18 LYS A 132 ALA A 141 -1 N VAL A 133 O VAL A 162 SHEET 8 B18 ILE A 71 GLY A 77 1 N ILE A 75 O LEU A 134 SHEET 9 B18 ARG A 103 LYS A 108 1 O ILE A 107 N VAL A 76 SHEET 10 B18 ARG B 103 LYS B 108 -1 O LYS B 108 N GLU A 106 SHEET 11 B18 ILE B 71 GLY B 77 1 N VAL B 76 O ILE B 107 SHEET 12 B18 LYS B 132 ALA B 141 1 O VAL B 136 N ILE B 75 SHEET 13 B18 GLY B 154 SER B 164 -1 O VAL B 162 N VAL B 133 SHEET 14 B18 ILE B 3 PHE B 11 -1 N ASP B 6 O LEU B 161 SHEET 15 B18 LEU B 169 LEU B 171 -1 O LEU B 171 N ILE B 3 SHEET 16 B18 VAL B 311 LEU B 319 -1 O GLU B 318 N ALA B 170 SHEET 17 B18 GLN B 300 GLY B 307 -1 N ILE B 301 O GLY B 317 SHEET 18 B18 ALA B 229 PHE B 232 1 N ALA B 231 O GLY B 302 SHEET 1 C 3 GLN A 41 VAL A 44 0 SHEET 2 C 3 TYR A 15 ASP A 18 -1 N ILE A 17 O MET A 42 SHEET 3 C 3 THR A 340 GLU A 341 1 O THR A 340 N TYR A 16 SHEET 1 D 2 PHE A 185 TRP A 186 0 SHEET 2 D 2 MET A 195 VAL A 196 -1 O MET A 195 N TRP A 186 SHEET 1 E 3 GLN A 361 THR A 362 0 SHEET 2 E 3 ILE A 371 ASN A 375 -1 O ILE A 374 N GLN A 361 SHEET 3 E 3 VAL A 378 TYR A 381 -1 O SER A 380 N SER A 372 SHEET 1 F 3 GLN B 41 VAL B 44 0 SHEET 2 F 3 TYR B 15 ASP B 18 -1 N ILE B 17 O MET B 42 SHEET 3 F 3 THR B 340 GLU B 341 1 O THR B 340 N TYR B 16 SHEET 1 G 2 PHE B 185 TRP B 186 0 SHEET 2 G 2 MET B 195 VAL B 196 -1 O MET B 195 N TRP B 186 SHEET 1 H 3 GLN B 361 THR B 362 0 SHEET 2 H 3 ILE B 371 ASN B 375 -1 O ILE B 374 N GLN B 361 SHEET 3 H 3 VAL B 378 TYR B 381 -1 O SER B 380 N SER B 372 LINK SG BCSD B 111 C2 BAAE B 611 1555 1555 1.81 LINK C ALA A 110 N ACSD A 111 1555 1555 1.34 LINK C ALA A 110 N BCSD A 111 1555 1555 1.33 LINK C ACSD A 111 N TYR A 112 1555 1555 1.33 LINK C BCSD A 111 N TYR A 112 1555 1555 1.33 LINK C ALA B 110 N BCSD B 111 1555 1555 1.37 LINK C BCSD B 111 N TYR B 112 1555 1555 1.30 CISPEP 1 GLY A 309 ALA A 310 0 -0.18 CISPEP 2 GLY B 309 ALA B 310 0 -0.17 SITE 1 AC1 3 LYS A 7 THR A 64 ARG A 167 SITE 1 AC2 9 ASP A 83 THR A 377 VAL A 378 ARG A 379 SITE 2 AC2 9 HOH A 650 HOH A 654 HOH A 720 TYR B 183 SITE 3 AC2 9 PRO B 188 SITE 1 AC3 6 LYS B 7 THR B 64 ARG B 167 HOH B 707 SITE 2 AC3 6 HOH B 772 HOH B 818 SITE 1 AC4 20 ALA A 254 ASP B 29 GLY B 31 LYS B 32 SITE 2 AC4 20 GLY B 36 TYR B 143 GLY B 148 GLY B 149 SITE 3 AC4 20 THR B 152 VAL B 196 SER B 201 ASN B 202 SITE 4 AC4 20 PRO B 235 TYR B 236 MET B 239 LYS B 242 SITE 5 AC4 20 AAE B 611 HOH B 778 HOH B 829 HOH B 858 SITE 1 AC5 10 CYS B 111 TYR B 143 PHE B 185 HIS B 233 SITE 2 AC5 10 ASN B 275 TYR B 277 SER B 308 COA B 601 SITE 3 AC5 10 HOH B 814 HOH B 858 SITE 1 AC6 8 TYR A 183 PRO A 188 ILE B 82 ASP B 83 SITE 2 AC6 8 THR B 377 ARG B 379 HOH B 651 HOH B 855 CRYST1 105.300 109.013 140.799 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007102 0.00000 MASTER 398 0 8 35 50 0 16 6 0 0 0 62 END