HEADER HYDROLASE 02-FEB-05 1YR2 TITLE STRUCTURAL AND MECHANISTIC ANALYSIS OF TWO PROLYL ENDOPEPTIDASES: ROLE TITLE 2 OF INTER-DOMAIN DYNAMICS IN CATALYSIS AND SPECIFICITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL OLIGOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROLYL ENDOPEPTIDASES; COMPND 5 EC: 3.4.21.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM CAPSULATUM; SOURCE 3 ORGANISM_TAXID: 13688; SOURCE 4 GENE: ATCC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PROLYL ENDOPEPTIDASE, MECHANISTIC STUDY, CELIAC SPRUE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.SHAN,I.I.MATHEWS,C.KHOSLA REVDAT 3 13-JUL-11 1YR2 1 VERSN REVDAT 2 24-FEB-09 1YR2 1 VERSN REVDAT 1 15-MAR-05 1YR2 0 JRNL AUTH L.SHAN,I.I.MATHEWS,C.KHOSLA JRNL TITL STRUCTURAL AND MECHANISTIC ANALYSIS OF TWO PROLYL JRNL TITL 2 ENDOPEPTIDASES: ROLE OF INTERDOMAIN DYNAMICS IN CATALYSIS JRNL TITL 3 AND SPECIFICITY JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 3599 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15738423 JRNL DOI 10.1073/PNAS.0408286102 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.SHAN,T.MARTI,L.M.SOLLID,G.M.GRAY,C.KHOSLA REMARK 1 TITL COMPARATIVE BIOCHEMICAL ANALYSIS OF THREE BACTERIAL PROLYL REMARK 1 TITL 2 ENDOPEPTIDASES: IMPLICATIONS FOR CELIAC SPRUE REMARK 1 REF BIOCHEM.J. V. 383 311 2004 REMARK 1 REFN ISSN 0264-6021 REMARK 1 PMID 15245330 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.SHAN,O.MOLBERG,I.PARROIT,F.HAUSCH,F.FILIZ,G.M.GRAY, REMARK 1 AUTH 2 L.M.SOLLID,C.KHOSLA REMARK 1 TITL STRUCTURAL BASIS FOR GLUTEN INTOLERANCE IN CELIAC SPRUE REMARK 1 REF SCIENCE V. 297 2275 2002 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 11915948 REMARK 1 DOI 10.1007/S00018-002-8427-5 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.POLGAR REMARK 1 TITL THE PROLYL OLIGOPEPTIDASE FAMILY REMARK 1 REF CELL.MOL.LIFE SCI. V. 59 349 2002 REMARK 1 REFN ISSN 1420-682X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 66171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3538 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4393 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5251 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.97000 REMARK 3 B22 (A**2) : 1.93000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.545 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5419 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4839 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7388 ; 1.561 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11222 ; 1.026 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 676 ; 6.281 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 790 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6119 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1155 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 890 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5346 ; 0.262 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3121 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 481 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.118 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.301 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3382 ; 0.988 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5418 ; 1.755 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2037 ; 2.764 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1970 ; 4.352 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 107 REMARK 3 RESIDUE RANGE : A 453 A 725 REMARK 3 ORIGIN FOR THE GROUP (A): 42.0986 40.9254 -30.0682 REMARK 3 T TENSOR REMARK 3 T11: 0.0780 T22: 0.0414 REMARK 3 T33: 0.0267 T12: 0.0360 REMARK 3 T13: 0.0242 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.8483 L22: 0.3301 REMARK 3 L33: 0.9385 L12: 0.0624 REMARK 3 L13: 0.4636 L23: 0.2463 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: 0.0856 S13: 0.0228 REMARK 3 S21: -0.0592 S22: -0.0105 S23: -0.0384 REMARK 3 S31: 0.0545 S32: 0.0358 S33: -0.0411 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 726 A 738 REMARK 3 ORIGIN FOR THE GROUP (A): 79.6414 44.0146 -14.2893 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.0666 REMARK 3 T33: 0.0746 T12: -0.0013 REMARK 3 T13: -0.0486 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 30.0191 L22: 0.3293 REMARK 3 L33: 5.0265 L12: 4.4798 REMARK 3 L13: -8.2204 L23: -3.5080 REMARK 3 S TENSOR REMARK 3 S11: 0.1958 S12: -0.8422 S13: -0.3150 REMARK 3 S21: 0.1928 S22: -0.1848 S23: -0.1090 REMARK 3 S31: 0.2482 S32: 0.1362 S33: -0.0110 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 452 REMARK 3 ORIGIN FOR THE GROUP (A): 37.9692 49.8286 8.8530 REMARK 3 T TENSOR REMARK 3 T11: 0.0384 T22: 0.0175 REMARK 3 T33: 0.0538 T12: -0.0041 REMARK 3 T13: -0.0174 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.0595 L22: 0.3179 REMARK 3 L33: 0.7644 L12: -0.0512 REMARK 3 L13: -0.1806 L23: -0.1331 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.0941 S13: -0.0191 REMARK 3 S21: 0.0122 S22: -0.0204 S23: -0.0287 REMARK 3 S31: -0.0196 S32: -0.0277 S33: 0.0010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YR2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB031832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68648 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50200 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1H2W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TRIS, PH 8.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.61200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 465 TRP A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 MET A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 THR A 17 REMARK 465 PRO A 18 REMARK 465 VAL A 19 REMARK 465 ALA A 20 REMARK 465 PHE A 21 REMARK 465 ALA A 22 REMARK 465 GLN A 23 REMARK 465 THR A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 THR A 27 REMARK 465 LEU A 28 REMARK 465 ALA A 29 REMARK 465 LYS A 30 REMARK 465 ASP A 31 REMARK 465 GLN A 32 REMARK 465 ALA A 33 REMARK 465 MET A 34 REMARK 465 PRO A 35 REMARK 465 SER A 36 REMARK 465 LEU A 37 REMARK 465 ALA A 158 REMARK 465 LYS A 159 REMARK 465 ASP A 160 REMARK 465 GLY A 161 REMARK 465 LYS A 231 REMARK 465 GLU A 232 REMARK 465 GLY A 233 REMARK 465 GLN A 234 REMARK 465 ALA A 235 REMARK 465 PHE A 236 REMARK 465 GLN A 237 REMARK 465 ALA A 238 REMARK 465 THR A 689 REMARK 465 ARG A 690 REMARK 465 ALA A 691 REMARK 465 GLY A 692 REMARK 465 HIS A 693 REMARK 465 GLY A 694 REMARK 465 SER A 695 REMARK 465 GLY A 696 REMARK 465 LYS A 697 REMARK 465 HIS A 739 REMARK 465 HIS A 740 REMARK 465 HIS A 741 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 738 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 71 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 345 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 166 -67.61 -94.89 REMARK 500 ASP A 220 24.87 -144.77 REMARK 500 THR A 290 -10.24 48.22 REMARK 500 LYS A 317 -34.78 -133.88 REMARK 500 VAL A 323 -70.84 -93.16 REMARK 500 LYS A 341 160.77 78.16 REMARK 500 SER A 410 -120.70 -97.66 REMARK 500 TRP A 447 -123.70 -106.45 REMARK 500 TYR A 495 -74.57 -128.27 REMARK 500 ARG A 541 -123.36 56.99 REMARK 500 SER A 575 -118.32 72.31 REMARK 500 THR A 611 -98.30 12.78 REMARK 500 SER A 636 109.64 -49.50 REMARK 500 ARG A 660 -60.53 -90.18 REMARK 500 HIS A 737 40.35 -79.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 290 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 805 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH A 947 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH A1276 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1281 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH A1346 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1398 DISTANCE = 6.12 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 755 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONFLICT MAY BE DUE TO A DIFFERENT LAB STRAIN. DBREF 1YR2 A 1 723 UNP Q9ZNM8 Q9ZNM8_9SPHN 1 723 SEQADV 1YR2 PHE A 667 UNP Q9ZNM8 LEU 667 SEE REMARK 999 SEQADV 1YR2 TRP A 724 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 SER A 725 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 SER A 726 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 VAL A 727 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 ASP A 728 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 LYS A 729 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 LEU A 730 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 ALA A 731 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 ALA A 732 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 ALA A 733 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 LEU A 734 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 GLU A 735 UNP Q9ZNM8 CLONING ARTIFACT SEQADV 1YR2 HIS A 736 UNP Q9ZNM8 EXPRESSION TAG SEQADV 1YR2 HIS A 737 UNP Q9ZNM8 EXPRESSION TAG SEQADV 1YR2 HIS A 738 UNP Q9ZNM8 EXPRESSION TAG SEQADV 1YR2 HIS A 739 UNP Q9ZNM8 EXPRESSION TAG SEQADV 1YR2 HIS A 740 UNP Q9ZNM8 EXPRESSION TAG SEQADV 1YR2 HIS A 741 UNP Q9ZNM8 EXPRESSION TAG SEQRES 1 A 741 MET LYS ASN ARG LEU TRP LEU ALA MET ALA ALA PRO LEU SEQRES 2 A 741 ALA LEU ALA THR PRO VAL ALA PHE ALA GLN THR PRO PRO SEQRES 3 A 741 THR LEU ALA LYS ASP GLN ALA MET PRO SER LEU PRO PRO SEQRES 4 A 741 TYR PRO ALA SER PRO GLN VAL PRO LEU VAL GLU ASP HIS SEQRES 5 A 741 PHE GLY GLU LYS VAL SER ASP PRO TRP ARG TRP LEU GLU SEQRES 6 A 741 ALA ASP VAL ARG THR ASP ALA LYS VAL ALA ALA TRP VAL SEQRES 7 A 741 GLN ALA GLN SER ALA TYR THR ALA ALA TYR LEU LYS GLN SEQRES 8 A 741 LEU PRO GLU ARG ALA ALA LEU GLU LYS ARG MET LYS ALA SEQRES 9 A 741 LEU ILE ASP TYR GLU ARG PHE GLY LEU PRO GLN ARG ARG SEQRES 10 A 741 GLY ALA SER VAL PHE TYR SER TRP ASN SER GLY LEU MET SEQRES 11 A 741 ASN GLN SER GLN LEU LEU VAL ARG PRO ALA ASP ALA PRO SEQRES 12 A 741 VAL GLY THR LYS GLY ARG VAL LEU LEU ASP PRO ASN THR SEQRES 13 A 741 TRP ALA LYS ASP GLY ALA THR ALA LEU ASP ALA TRP ALA SEQRES 14 A 741 ALA SER ASP ASP GLY ARG LEU LEU ALA TYR SER VAL GLN SEQRES 15 A 741 ASP GLY GLY SER ASP TRP ARG THR VAL LYS PHE VAL GLY SEQRES 16 A 741 VAL ALA ASP GLY LYS PRO LEU ALA ASP GLU LEU LYS TRP SEQRES 17 A 741 VAL LYS PHE SER GLY LEU ALA TRP LEU GLY ASN ASP ALA SEQRES 18 A 741 LEU LEU TYR SER ARG PHE ALA GLU PRO LYS GLU GLY GLN SEQRES 19 A 741 ALA PHE GLN ALA LEU ASN TYR ASN GLN THR VAL TRP LEU SEQRES 20 A 741 HIS ARG LEU GLY THR PRO GLN SER ALA ASP GLN PRO VAL SEQRES 21 A 741 PHE ALA THR PRO GLU LEU PRO LYS ARG GLY HIS GLY ALA SEQRES 22 A 741 SER VAL SER SER ASP GLY ARG TRP VAL VAL ILE THR SER SEQRES 23 A 741 SER GLU GLY THR ASP PRO VAL ASN THR VAL HIS VAL ALA SEQRES 24 A 741 ARG VAL THR ASN GLY LYS ILE GLY PRO VAL THR ALA LEU SEQRES 25 A 741 ILE PRO ASP LEU LYS ALA GLN TRP ASP PHE VAL ASP GLY SEQRES 26 A 741 VAL GLY ASP GLN LEU TRP PHE VAL SER GLY ASP GLY ALA SEQRES 27 A 741 PRO LEU LYS LYS ILE VAL ARG VAL ASP LEU SER GLY SER SEQRES 28 A 741 THR PRO ARG PHE ASP THR VAL VAL PRO GLU SER LYS ASP SEQRES 29 A 741 ASN LEU GLU SER VAL GLY ILE ALA GLY ASN ARG LEU PHE SEQRES 30 A 741 ALA SER TYR ILE HIS ASP ALA LYS SER GLN VAL LEU ALA SEQRES 31 A 741 PHE ASP LEU ASP GLY LYS PRO ALA GLY ALA VAL SER LEU SEQRES 32 A 741 PRO GLY ILE GLY SER ALA SER GLY LEU SER GLY ARG PRO SEQRES 33 A 741 GLY ASP ARG HIS ALA TYR LEU SER PHE SER SER PHE THR SEQRES 34 A 741 GLN PRO ALA THR VAL LEU ALA LEU ASP PRO ALA THR ALA SEQRES 35 A 741 LYS THR THR PRO TRP GLU PRO VAL HIS LEU THR PHE ASP SEQRES 36 A 741 PRO ALA ASP PHE ARG VAL GLU GLN VAL PHE TYR PRO SER SEQRES 37 A 741 LYS ASP GLY THR LYS VAL PRO MET PHE ILE VAL ARG ARG SEQRES 38 A 741 LYS ASP ALA LYS GLY PRO LEU PRO THR LEU LEU TYR GLY SEQRES 39 A 741 TYR GLY GLY PHE ASN VAL ALA LEU THR PRO TRP PHE SER SEQRES 40 A 741 ALA GLY PHE MET THR TRP ILE ASP SER GLY GLY ALA PHE SEQRES 41 A 741 ALA LEU ALA ASN LEU ARG GLY GLY GLY GLU TYR GLY ASP SEQRES 42 A 741 ALA TRP HIS ASP ALA GLY ARG ARG ASP LYS LYS GLN ASN SEQRES 43 A 741 VAL PHE ASP ASP PHE ILE ALA ALA GLY GLU TRP LEU ILE SEQRES 44 A 741 ALA ASN GLY VAL THR PRO ARG HIS GLY LEU ALA ILE GLU SEQRES 45 A 741 GLY GLY SER ASN GLY GLY LEU LEU ILE GLY ALA VAL THR SEQRES 46 A 741 ASN GLN ARG PRO ASP LEU PHE ALA ALA ALA SER PRO ALA SEQRES 47 A 741 VAL GLY VAL MET ASP MET LEU ARG PHE ASP GLN PHE THR SEQRES 48 A 741 ALA GLY ARG TYR TRP VAL ASP ASP TYR GLY TYR PRO GLU SEQRES 49 A 741 LYS GLU ALA ASP TRP ARG VAL LEU ARG ARG TYR SER PRO SEQRES 50 A 741 TYR HIS ASN VAL ARG SER GLY VAL ASP TYR PRO ALA ILE SEQRES 51 A 741 LEU VAL THR THR ALA ASP THR ASP ASP ARG VAL VAL PRO SEQRES 52 A 741 GLY HIS SER PHE LYS TYR THR ALA ALA LEU GLN THR ALA SEQRES 53 A 741 ALA ILE GLY PRO LYS PRO HIS LEU ILE ARG ILE GLU THR SEQRES 54 A 741 ARG ALA GLY HIS GLY SER GLY LYS PRO ILE ASP LYS GLN SEQRES 55 A 741 ILE GLU GLU THR ALA ASP VAL GLN ALA PHE LEU ALA HIS SEQRES 56 A 741 PHE THR GLY LEU THR PRO ARG PRO TRP SER SER VAL ASP SEQRES 57 A 741 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET GOL A 750 6 HET GOL A 755 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *660(H2 O) HELIX 1 1 TRP A 61 ALA A 66 5 6 HELIX 2 2 ASP A 71 LYS A 90 1 20 HELIX 3 3 GLU A 94 ILE A 106 1 13 HELIX 4 4 ASP A 153 TRP A 157 5 5 HELIX 5 5 PRO A 253 ASP A 257 5 5 HELIX 6 6 ASP A 455 ALA A 457 5 3 HELIX 7 7 SER A 507 ASP A 515 1 9 HELIX 8 8 TYR A 531 ALA A 538 1 8 HELIX 9 9 GLY A 539 ASP A 542 5 4 HELIX 10 10 LYS A 543 ASN A 561 1 19 HELIX 11 11 SER A 575 ARG A 588 1 14 HELIX 12 12 PRO A 589 PHE A 592 5 4 HELIX 13 13 ARG A 606 PHE A 610 5 5 HELIX 14 14 ALA A 612 TYR A 615 5 4 HELIX 15 15 TRP A 616 GLY A 621 1 6 HELIX 16 16 LYS A 625 ARG A 634 1 10 HELIX 17 17 SER A 636 ASN A 640 5 5 HELIX 18 18 PRO A 663 ALA A 676 1 14 HELIX 19 19 PRO A 698 GLY A 718 1 21 HELIX 20 20 SER A 725 HIS A 736 1 12 SHEET 1 A 2 VAL A 49 HIS A 52 0 SHEET 2 A 2 GLU A 55 SER A 58 -1 O GLU A 55 N HIS A 52 SHEET 1 B 3 ARG A 110 PHE A 111 0 SHEET 2 B 3 SER A 120 ASN A 126 -1 O ASN A 126 N ARG A 110 SHEET 3 B 3 GLN A 115 ARG A 117 -1 N GLN A 115 O PHE A 122 SHEET 1 C 4 ARG A 110 PHE A 111 0 SHEET 2 C 4 SER A 120 ASN A 126 -1 O ASN A 126 N ARG A 110 SHEET 3 C 4 GLN A 134 PRO A 139 -1 O LEU A 136 N TYR A 123 SHEET 4 C 4 ARG A 149 LEU A 152 -1 O LEU A 151 N LEU A 135 SHEET 1 D 4 THR A 163 ALA A 170 0 SHEET 2 D 4 LEU A 176 ASP A 183 -1 O SER A 180 N ASP A 166 SHEET 3 D 4 TRP A 188 GLY A 195 -1 O LYS A 192 N TYR A 179 SHEET 4 D 4 PRO A 201 LYS A 210 -1 O VAL A 209 N ARG A 189 SHEET 1 E 4 ALA A 215 TRP A 216 0 SHEET 2 E 4 ALA A 221 ARG A 226 -1 O LEU A 223 N ALA A 215 SHEET 3 E 4 THR A 244 ARG A 249 -1 O HIS A 248 N LEU A 222 SHEET 4 E 4 GLN A 258 PHE A 261 -1 O VAL A 260 N VAL A 245 SHEET 1 F 4 GLY A 270 VAL A 275 0 SHEET 2 F 4 TRP A 281 SER A 287 -1 O SER A 287 N GLY A 270 SHEET 3 F 4 THR A 295 THR A 302 -1 O HIS A 297 N ILE A 284 SHEET 4 F 4 LYS A 305 ILE A 306 -1 O LYS A 305 N THR A 302 SHEET 1 G 4 GLY A 270 VAL A 275 0 SHEET 2 G 4 TRP A 281 SER A 287 -1 O SER A 287 N GLY A 270 SHEET 3 G 4 THR A 295 THR A 302 -1 O HIS A 297 N ILE A 284 SHEET 4 G 4 THR A 310 ILE A 313 -1 O THR A 310 N VAL A 298 SHEET 1 H 4 TRP A 320 VAL A 326 0 SHEET 2 H 4 GLN A 329 SER A 334 -1 O TRP A 331 N VAL A 323 SHEET 3 H 4 LYS A 342 ASP A 347 -1 O VAL A 346 N LEU A 330 SHEET 4 H 4 ARG A 354 VAL A 359 -1 O ASP A 356 N ARG A 345 SHEET 1 I 4 ASN A 365 ALA A 372 0 SHEET 2 I 4 ARG A 375 HIS A 382 -1 O SER A 379 N SER A 368 SHEET 3 I 4 LYS A 385 ASP A 392 -1 O PHE A 391 N LEU A 376 SHEET 4 I 4 PRO A 397 ALA A 400 -1 O GLY A 399 N ALA A 390 SHEET 1 J 4 SER A 408 SER A 413 0 SHEET 2 J 4 ALA A 421 SER A 427 -1 O SER A 426 N SER A 408 SHEET 3 J 4 GLN A 430 ASP A 438 -1 O LEU A 435 N LEU A 423 SHEET 4 J 4 LYS A 443 PRO A 446 -1 O THR A 445 N ALA A 436 SHEET 1 K 8 PHE A 459 PRO A 467 0 SHEET 2 K 8 LYS A 473 ARG A 481 -1 O ILE A 478 N GLU A 462 SHEET 3 K 8 ALA A 519 ALA A 523 -1 O PHE A 520 N VAL A 479 SHEET 4 K 8 THR A 490 TYR A 493 1 N TYR A 493 O ALA A 521 SHEET 5 K 8 LEU A 569 GLY A 574 1 O ALA A 570 N THR A 490 SHEET 6 K 8 ALA A 594 ALA A 598 1 O ALA A 598 N GLY A 573 SHEET 7 K 8 ALA A 649 ALA A 655 1 O ALA A 649 N ALA A 595 SHEET 8 K 8 HIS A 683 GLU A 688 1 O ARG A 686 N VAL A 652 SITE 1 AC1 8 PRO A 589 ASP A 590 PHE A 592 TYR A 647 SITE 2 AC1 8 PRO A 648 LYS A 681 HOH A1304 HOH A1310 SITE 1 AC2 9 ARG A 175 ALA A 197 GLY A 644 VAL A 645 SITE 2 AC2 9 ASP A 646 ALA A 677 HOH A 792 HOH A 878 SITE 3 AC2 9 HOH A 934 CRYST1 53.341 91.224 79.787 90.00 91.00 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018747 0.000000 0.000327 0.00000 SCALE2 0.000000 0.010962 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012535 0.00000 MASTER 472 0 2 20 45 0 5 6 0 0 0 57 END