HEADER OXIDOREDUCTASE 25-JAN-05 1YNP TITLE ALDO-KETO REDUCTASE AKR11C1 FROM BACILLUS HALODURANS (APO FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AKR11C1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: C-125; SOURCE 5 GENE: BH1011; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ALDO-KETO REDUCTASE, AKR11C1, NADPH, BACILLUS HALODURANS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MARQUARDT,D.KOSTREWA,F.K.WINKLER,X.D.LI REVDAT 5 29-JUL-20 1YNP 1 COMPND REMARK SEQADV HET REVDAT 5 2 1 HETNAM HETSYN FORMUL LINK REVDAT 5 3 1 SITE ATOM REVDAT 4 11-OCT-17 1YNP 1 REMARK REVDAT 3 13-JUL-11 1YNP 1 VERSN REVDAT 2 24-FEB-09 1YNP 1 VERSN REVDAT 1 06-DEC-05 1YNP 0 JRNL AUTH T.MARQUARDT,D.KOSTREWA,R.BALAKRISHNAN,A.GASPERINA,C.KAMBACH, JRNL AUTH 2 A.PODJARNY,F.K.WINKLER,G.K.BALENDIRAN,X.D.LI JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF AKR11C1 FROM BACILLUS JRNL TITL 2 HALODURANS: AN NADPH-DEPENDENT 4-HYDROXY-2,3-TRANS-NONENAL JRNL TITL 3 REDUCTASE JRNL REF J.MOL.BIOL. V. 354 304 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16242712 JRNL DOI 10.1016/J.JMB.2005.09.067 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 169110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8920 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 606 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4661 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 586 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 1.04000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.499 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4849 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6555 ; 1.691 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 5.710 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;34.234 ;23.891 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 887 ;12.702 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;12.238 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 721 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3601 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2348 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3301 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 465 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 94 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2887 ; 2.729 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4657 ; 3.723 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2012 ; 5.065 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1897 ; 6.794 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4899 ; 3.141 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 587 ; 9.146 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4781 ; 6.530 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YNP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97784, 1.3783 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 178042 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 38.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : 0.50600 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (NH4)2SO4, LI2SO4, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.33450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.71350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.28300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.71350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.33450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.28300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 2 BIOLOGICAL UNITS IN THE ASU (CHAIN A AND CHAIN B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLY A 78 REMARK 465 ASN A 79 REMARK 465 ARG A 80 REMARK 465 PHE A 81 REMARK 465 GLU A 82 REMARK 465 GLN A 83 REMARK 465 GLY A 84 REMARK 465 LYS A 85 REMARK 465 GLU A 86 REMARK 465 GLY A 87 REMARK 465 TRP A 88 REMARK 465 TRP A 89 REMARK 465 TRP A 90 REMARK 465 ASP A 91 REMARK 465 PRO A 92 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 421 O HOH A 557 2.04 REMARK 500 OE1 GLU A 297 O HOH A 566 2.04 REMARK 500 NZ LYS B 29 O HOH B 599 2.06 REMARK 500 O HOH B 488 O HOH B 509 2.09 REMARK 500 OE1 GLN A 294 O HOH A 351 2.13 REMARK 500 NH1 ARG A 219 OD1 ASP A 221 2.15 REMARK 500 O HOH A 431 O HOH A 550 2.16 REMARK 500 O2 SO4 B 298 O HOH B 563 2.16 REMARK 500 O HOH B 430 O HOH B 528 2.18 REMARK 500 O HOH B 444 O HOH B 505 2.18 REMARK 500 OE1 GLN A 187 O HOH A 567 2.18 REMARK 500 OE1 GLU B 82 O HOH B 531 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A -1 C MET A 1 N 0.187 REMARK 500 HIS B -1 C MET B 1 N 0.307 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 HIS B -1 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 LYS B 3 CD - CE - NZ ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG B 80 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 67 26.99 -140.88 REMARK 500 LEU A 204 45.87 -100.49 REMARK 500 SER A 205 -155.42 -143.90 REMARK 500 LEU A 216 -128.64 53.56 REMARK 500 ALA A 246 3.28 -69.92 REMARK 500 THR B 47 -165.32 -126.04 REMARK 500 ARG B 67 30.90 -149.17 REMARK 500 LEU B 204 48.54 -103.90 REMARK 500 LEU B 216 -122.43 49.07 REMARK 500 ALA B 257 115.62 -162.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS B -1 19.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 299 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 HOH A 342 O 116.9 REMARK 620 3 ILE B 143 O 111.1 117.9 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YNQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND COFACTOR NADPH DBREF 1YNP A 1 297 UNP Q9KE47 Q9KE47_BACHD 1 297 DBREF 1YNP B 1 297 UNP Q9KE47 Q9KE47_BACHD 1 297 SEQADV 1YNP MET A -20 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY A -19 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER A -18 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER A -17 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -16 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -15 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -14 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -13 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -12 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -11 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER A -10 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER A -9 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY A -8 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP LEU A -7 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP VAL A -6 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP PRO A -5 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP ARG A -4 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY A -3 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER A -2 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -1 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP MET B -20 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY B -19 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER B -18 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER B -17 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -16 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -15 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -14 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -13 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -12 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -11 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER B -10 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER B -9 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY B -8 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP LEU B -7 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP VAL B -6 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP PRO B -5 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP ARG B -4 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY B -3 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER B -2 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -1 UNP Q9KE47 CLONING ARTIFACT SEQRES 1 A 317 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 317 LEU VAL PRO ARG GLY SER HIS MET LYS LYS ARG GLN LEU SEQRES 3 A 317 GLY THR SER ASP LEU HIS VAL SER GLU LEU GLY PHE GLY SEQRES 4 A 317 CYS MET SER LEU GLY THR ASP GLU THR LYS ALA ARG ARG SEQRES 5 A 317 ILE MET ASP GLU VAL LEU GLU LEU GLY ILE ASN TYR LEU SEQRES 6 A 317 ASP THR ALA ASP LEU TYR ASN GLN GLY LEU ASN GLU GLN SEQRES 7 A 317 PHE VAL GLY LYS ALA LEU LYS GLY ARG ARG GLN ASP ILE SEQRES 8 A 317 ILE LEU ALA THR LYS VAL GLY ASN ARG PHE GLU GLN GLY SEQRES 9 A 317 LYS GLU GLY TRP TRP TRP ASP PRO SER LYS ALA TYR ILE SEQRES 10 A 317 LYS GLU ALA VAL LYS ASP SER LEU ARG ARG LEU GLN THR SEQRES 11 A 317 ASP TYR ILE ASP LEU TYR GLN LEU HIS GLY GLY THR ILE SEQRES 12 A 317 ASP ASP PRO ILE ASP GLU THR ILE GLU ALA PHE GLU GLU SEQRES 13 A 317 LEU LYS GLN GLU GLY VAL ILE ARG TYR TYR GLY ILE SER SEQRES 14 A 317 SER ILE ARG PRO ASN VAL ILE LYS GLU TYR LEU LYS ARG SEQRES 15 A 317 SER ASN ILE VAL SER ILE MET MET GLN TYR SER ILE LEU SEQRES 16 A 317 ASP ARG ARG PRO GLU GLU TRP PHE PRO LEU ILE GLN GLU SEQRES 17 A 317 HIS GLY VAL SER VAL VAL VAL ARG GLY PRO VAL ALA ARG SEQRES 18 A 317 GLY LEU LEU SER ARG ARG PRO LEU PRO GLU GLY GLU GLY SEQRES 19 A 317 TYR LEU ASN TYR ARG TYR ASP GLU LEU LYS LEU LEU ARG SEQRES 20 A 317 GLU SER LEU PRO THR ASP ARG PRO LEU HIS GLU LEU ALA SEQRES 21 A 317 LEU GLN TYR CYS LEU ALA HIS ASP VAL VAL ALA THR VAL SEQRES 22 A 317 ALA ALA GLY ALA SER SER ILE ASP GLN VAL LYS ALA ASN SEQRES 23 A 317 VAL GLN ALA VAL GLU ALA THR PRO LEU THR ALA GLU GLU SEQRES 24 A 317 ARG GLN HIS ILE GLN LYS LEU ALA LYS ALA ALA VAL TYR SEQRES 25 A 317 GLU GLN HIS ARG GLU SEQRES 1 B 317 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 317 LEU VAL PRO ARG GLY SER HIS MET LYS LYS ARG GLN LEU SEQRES 3 B 317 GLY THR SER ASP LEU HIS VAL SER GLU LEU GLY PHE GLY SEQRES 4 B 317 CYS MET SER LEU GLY THR ASP GLU THR LYS ALA ARG ARG SEQRES 5 B 317 ILE MET ASP GLU VAL LEU GLU LEU GLY ILE ASN TYR LEU SEQRES 6 B 317 ASP THR ALA ASP LEU TYR ASN GLN GLY LEU ASN GLU GLN SEQRES 7 B 317 PHE VAL GLY LYS ALA LEU LYS GLY ARG ARG GLN ASP ILE SEQRES 8 B 317 ILE LEU ALA THR LYS VAL GLY ASN ARG PHE GLU GLN GLY SEQRES 9 B 317 LYS GLU GLY TRP TRP TRP ASP PRO SER LYS ALA TYR ILE SEQRES 10 B 317 LYS GLU ALA VAL LYS ASP SER LEU ARG ARG LEU GLN THR SEQRES 11 B 317 ASP TYR ILE ASP LEU TYR GLN LEU HIS GLY GLY THR ILE SEQRES 12 B 317 ASP ASP PRO ILE ASP GLU THR ILE GLU ALA PHE GLU GLU SEQRES 13 B 317 LEU LYS GLN GLU GLY VAL ILE ARG TYR TYR GLY ILE SER SEQRES 14 B 317 SER ILE ARG PRO ASN VAL ILE LYS GLU TYR LEU LYS ARG SEQRES 15 B 317 SER ASN ILE VAL SER ILE MET MET GLN TYR SER ILE LEU SEQRES 16 B 317 ASP ARG ARG PRO GLU GLU TRP PHE PRO LEU ILE GLN GLU SEQRES 17 B 317 HIS GLY VAL SER VAL VAL VAL ARG GLY PRO VAL ALA ARG SEQRES 18 B 317 GLY LEU LEU SER ARG ARG PRO LEU PRO GLU GLY GLU GLY SEQRES 19 B 317 TYR LEU ASN TYR ARG TYR ASP GLU LEU LYS LEU LEU ARG SEQRES 20 B 317 GLU SER LEU PRO THR ASP ARG PRO LEU HIS GLU LEU ALA SEQRES 21 B 317 LEU GLN TYR CYS LEU ALA HIS ASP VAL VAL ALA THR VAL SEQRES 22 B 317 ALA ALA GLY ALA SER SER ILE ASP GLN VAL LYS ALA ASN SEQRES 23 B 317 VAL GLN ALA VAL GLU ALA THR PRO LEU THR ALA GLU GLU SEQRES 24 B 317 ARG GLN HIS ILE GLN LYS LEU ALA LYS ALA ALA VAL TYR SEQRES 25 B 317 GLU GLN HIS ARG GLU HET GLC C 1 11 HET FRU C 2 12 HET NA A 299 1 HET SO4 A 300 5 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET GOL A 308 6 HET SO4 B 298 5 HET SO4 B 299 5 HET SO4 B 300 5 HET SO4 B 301 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GLC C6 H12 O6 FORMUL 3 FRU C6 H12 O6 FORMUL 4 NA NA 1+ FORMUL 5 SO4 12(O4 S 2-) FORMUL 13 GOL C3 H8 O3 FORMUL 18 HOH *586(H2 O) HELIX 1 1 ASP A 26 LEU A 40 1 15 HELIX 2 2 ASN A 56 LYS A 65 1 10 HELIX 3 3 ARG A 67 ILE A 71 5 5 HELIX 4 4 SER A 93 GLN A 109 1 17 HELIX 5 5 PRO A 126 GLU A 140 1 15 HELIX 6 6 ARG A 152 SER A 163 1 12 HELIX 7 7 ARG A 177 GLU A 181 5 5 HELIX 8 8 TRP A 182 HIS A 189 1 8 HELIX 9 9 VAL A 199 LEU A 203 5 5 HELIX 10 10 ARG A 219 LEU A 230 1 12 HELIX 11 11 PRO A 235 ALA A 246 1 12 HELIX 12 12 SER A 259 GLU A 271 1 13 HELIX 13 13 THR A 276 ALA A 287 1 12 HELIX 14 14 MET B 21 GLY B 24 5 4 HELIX 15 15 ASP B 26 LEU B 40 1 15 HELIX 16 16 LEU B 50 GLN B 53 5 4 HELIX 17 17 GLY B 54 LYS B 65 1 12 HELIX 18 18 SER B 93 GLN B 109 1 17 HELIX 19 19 PRO B 126 GLU B 140 1 15 HELIX 20 20 ARG B 152 SER B 163 1 12 HELIX 21 21 ARG B 177 GLU B 181 5 5 HELIX 22 22 TRP B 182 HIS B 189 1 8 HELIX 23 23 ARG B 219 LEU B 230 1 12 HELIX 24 24 PRO B 235 ALA B 246 1 12 HELIX 25 25 SER B 259 GLU B 271 1 13 HELIX 26 26 THR B 276 ALA B 287 1 12 SHEET 1 A 2 LYS A 3 GLN A 5 0 SHEET 2 A 2 HIS A 12 SER A 14 -1 O VAL A 13 N ARG A 4 SHEET 1 B 7 TYR A 44 ASP A 46 0 SHEET 2 B 7 ILE A 72 VAL A 77 1 O ALA A 74 N LEU A 45 SHEET 3 B 7 ILE A 113 LEU A 118 1 O GLN A 117 N VAL A 77 SHEET 4 B 7 ILE A 143 SER A 149 1 O SER A 149 N LEU A 118 SHEET 5 B 7 SER A 167 GLN A 171 1 O MET A 169 N ILE A 148 SHEET 6 B 7 SER A 192 ARG A 196 1 O VAL A 194 N MET A 170 SHEET 7 B 7 VAL A 250 ALA A 254 1 O ALA A 254 N VAL A 195 SHEET 1 C 2 LYS B 3 GLN B 5 0 SHEET 2 C 2 HIS B 12 SER B 14 -1 O VAL B 13 N ARG B 4 SHEET 1 D 9 LEU B 16 GLY B 19 0 SHEET 2 D 9 TYR B 44 ASP B 46 1 O ASP B 46 N PHE B 18 SHEET 3 D 9 ILE B 72 VAL B 77 1 O ALA B 74 N LEU B 45 SHEET 4 D 9 ILE B 113 LEU B 118 1 O GLN B 117 N VAL B 77 SHEET 5 D 9 ILE B 143 SER B 149 1 O SER B 149 N LEU B 118 SHEET 6 D 9 SER B 167 GLN B 171 1 O MET B 169 N ILE B 148 SHEET 7 D 9 SER B 192 ARG B 196 1 O VAL B 194 N MET B 170 SHEET 8 D 9 VAL B 250 ALA B 255 1 O ALA B 254 N VAL B 195 SHEET 9 D 9 LEU B 16 GLY B 19 1 N GLY B 17 O VAL B 253 SHEET 1 E 2 ASN B 79 ARG B 80 0 SHEET 2 E 2 TRP B 89 TRP B 90 -1 O TRP B 89 N ARG B 80 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.42 LINK OE2 GLU A 181 NA NA A 299 1555 1555 2.64 LINK NA NA A 299 O HOH A 342 1555 1555 2.69 LINK NA NA A 299 O ILE B 143 1555 1555 2.84 CRYST1 74.669 86.566 105.427 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009500 0.00000 MASTER 422 0 16 26 22 0 0 6 0 0 0 50 END