HEADER MEMBRANE PROTEIN/ VIRUS/VIRAL PROTEIN 21-JAN-05 1YMJ TITLE INTERACTION BETWEEN THE ADENINE NUCLEOTIDE TRANSLOCATOR AND TITLE 2 THE HUMAN IMMUNODEFICIENCY VIRUS-1 PROTEIN VPR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP,ATP CARRIER PROTEIN, HEART ISOFORM T1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADP/ATP TRANSLOCASE 1, ADENINE NUCLEOTIDE COMPND 5 TRANSLOCATOR 1, ANT 1, SOLUTE CARRIER FAMILY 25, MEMBER 4; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VPR PROTEIN; COMPND 8 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 TISSUE: HEART; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 7 ORGANISM_COMMON: VIRUSES KEYWDS ANT-VPR COMPLEX EXPDTA THEORETICAL MODEL AUTHOR E.N.SABBAH,S.DRUILLENNEC,N.MORELLET,S.BOUAZIZ,G.KROEMER, AUTHOR 2 B.P.ROQUES REVDAT 2 28-MAR-06 1YMJ 1 COMPND EXPDTA SOURCE REMARK REVDAT 2 2 1 AUTHOR JRNL REVDAT 1 17-JAN-06 1YMJ 0 JRNL AUTH E.N.SABBAH,S.DRUILLENNEC,N.MORELLET,S.BOUAZIZ, JRNL AUTH 2 G.KROEMER,B.P.ROQUES JRNL TITL INTERACTION BETWEEN THE HIV-1 PROTEIN VPR AND THE JRNL TITL 2 ADENINE NUCLEOTIDE TRANSLOCATOR JRNL REF CHEM.BIOL.DRUG.DES. V. 67 145 2006 JRNL REFN US ISSN 1747-0277 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.MORELLET,S.BOUAZIZ,P.PETITJEAN,B.P.ROQUES REMARK 1 TITL NMR STRUCTURE OF THE HIV-1 REGULATORY PROTEIN VPR REMARK 1 REF J.MOL.BIOL. V. 327 215 2003 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.PEBAY-PEYROULA,C.DAHOUT-GONZALEZ,R.KAHN, REMARK 1 AUTH 2 V.TREZEGUET,G.J.LAUQUIN,G.BRANDOLIN REMARK 1 TITL STRUCTURE OF MITOCHONDRIAL ADP/ATP CARRIER IN REMARK 1 TITL 2 COMPLEX WITH CARBOXYATRACTYLOSIDE REMARK 1 REF NATURE V. 426 39 2003 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GRAMM V1.03, DISCOVER 3.851 REMARK 3 AUTHORS : VAKSER (GRAMM), ACCELRYS (DISCOVER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YMJ COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-2005. REMARK 100 THE RCSB ID CODE IS RCSB031686. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: DOCKING WITH THE PROGRAM GRAMM AND MOLECULAR DYNAMICS REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 LYS A 294 REMARK 465 LYS A 295 REMARK 465 PHE A 296 REMARK 465 VAL A 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 VAL A 207 CG1 CG2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 ILE A 293 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 10 CG ASP A 10 OD2 0.112 REMARK 500 GLU A 29 CD GLU A 29 OE2 0.114 REMARK 500 GLU A 47 CD GLU A 47 OE2 0.115 REMARK 500 ASP A 55 CG ASP A 55 OD2 0.114 REMARK 500 GLU A 63 CD GLU A 63 OE2 0.115 REMARK 500 ASP A 92 CG ASP A 92 OD2 0.114 REMARK 500 ASP A 103 CG ASP A 103 OD2 0.115 REMARK 500 ASP A 134 CG ASP A 134 OD2 0.113 REMARK 500 ASP A 143 CG ASP A 143 OD2 0.112 REMARK 500 GLU A 152 CD GLU A 152 OE2 0.115 REMARK 500 ASP A 167 CG ASP A 167 OD2 0.115 REMARK 500 ASP A 195 CG ASP A 195 OD2 0.115 REMARK 500 ASP A 203 CG ASP A 203 OD2 0.115 REMARK 500 ASP A 231 CG ASP A 231 OD2 0.115 REMARK 500 ASP A 247 CG ASP A 247 OD2 0.116 REMARK 500 ASP A 255 CG ASP A 255 OD2 0.114 REMARK 500 ASP A 263 CG ASP A 263 OD2 0.114 REMARK 500 GLU A 264 CD GLU A 264 OE2 0.114 REMARK 500 ASP A 291 CG ASP A 291 OD2 0.114 REMARK 500 GLU A 292 CD GLU A 292 OE2 0.114 REMARK 500 GLU B 2 CD GLU B 2 OE2 0.114 REMARK 500 GLU B 6 CD GLU B 6 OE2 0.115 REMARK 500 ASP B 7 CG ASP B 7 OD2 0.113 REMARK 500 GLU B 13 CD GLU B 13 OE2 0.113 REMARK 500 ASP B 17 CG ASP B 17 OD2 0.115 REMARK 500 GLU B 21 CD GLU B 21 OE2 0.114 REMARK 500 GLU B 24 CD GLU B 24 OE2 0.109 REMARK 500 GLU B 25 CD GLU B 25 OE2 0.113 REMARK 500 GLU B 29 CD GLU B 29 OE2 0.114 REMARK 500 GLU B 48 CD GLU B 48 OE2 0.114 REMARK 500 ASP B 52 CG ASP B 52 OD2 0.113 REMARK 500 GLU B 58 CD GLU B 58 OE2 0.115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 4 146.77 73.16 REMARK 500 ASN B 16 -92.10 54.93 REMARK 500 ASP B 52 130.66 81.52 REMARK 500 ILE B 84 -68.36 71.14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 233 ARG A 234 -142.87 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OKC RELATED DB: PDB REMARK 900 X-RAY ANT STRUCTURE REMARK 900 RELATED ID: 1M8L RELATED DB: PDB REMARK 900 NMR VPR STRUCTURE DBREF 1YMJ A 1 297 UNP P02722 ADT1_BOVIN 1 297 DBREF 1YMJ B 1 96 GB 1055033 AAA81039 1 96 SEQRES 1 A 297 SER ASP GLN ALA LEU SER PHE LEU LYS ASP PHE LEU ALA SEQRES 2 A 297 GLY GLY VAL ALA ALA ALA ILE SER LYS THR ALA VAL ALA SEQRES 3 A 297 PRO ILE GLU ARG VAL LYS LEU LEU LEU GLN VAL GLN HIS SEQRES 4 A 297 ALA SER LYS GLN ILE SER ALA GLU LYS GLN TYR LYS GLY SEQRES 5 A 297 ILE ILE ASP CYS VAL VAL ARG ILE PRO LYS GLU GLN GLY SEQRES 6 A 297 PHE LEU SER PHE TRP ARG GLY ASN LEU ALA ASN VAL ILE SEQRES 7 A 297 ARG TYR PHE PRO THR GLN ALA LEU ASN PHE ALA PHE LYS SEQRES 8 A 297 ASP LYS TYR LYS GLN ILE PHE LEU GLY GLY VAL ASP ARG SEQRES 9 A 297 HIS LYS GLN PHE TRP ARG TYR PHE ALA GLY ASN LEU ALA SEQRES 10 A 297 SER GLY GLY ALA ALA GLY ALA THR SER LEU CYS PHE VAL SEQRES 11 A 297 TYR PRO LEU ASP PHE ALA ARG THR ARG LEU ALA ALA ASP SEQRES 12 A 297 VAL GLY LYS GLY ALA ALA GLN ARG GLU PHE THR GLY LEU SEQRES 13 A 297 GLY ASN CYS ILE THR LYS ILE PHE LYS SER ASP GLY LEU SEQRES 14 A 297 ARG GLY LEU TYR GLN GLY PHE ASN VAL SER VAL GLN GLY SEQRES 15 A 297 ILE ILE ILE TYR ARG ALA ALA TYR PHE GLY VAL TYR ASP SEQRES 16 A 297 THR ALA LYS GLY MET LEU PRO ASP PRO LYS ASN VAL HIS SEQRES 17 A 297 ILE ILE VAL SER TRP MET ILE ALA GLN THR VAL THR ALA SEQRES 18 A 297 VAL ALA GLY LEU VAL SER TYR PRO PHE ASP THR VAL ARG SEQRES 19 A 297 ARG ARG MET MET MET GLN SER GLY ARG LYS GLY ALA ASP SEQRES 20 A 297 ILE MET TYR THR GLY THR VAL ASP CYS TRP ARG LYS ILE SEQRES 21 A 297 ALA LYS ASP GLU GLY PRO LYS ALA PHE PHE LYS GLY ALA SEQRES 22 A 297 TRP SER ASN VAL LEU ARG GLY MET GLY GLY ALA PHE VAL SEQRES 23 A 297 LEU VAL LEU TYR ASP GLU ILE LYS LYS PHE VAL SEQRES 1 B 96 MET GLU GLN ALA PRO GLU ASP GLN GLY PRO GLN ARG GLU SEQRES 2 B 96 PRO TYR ASN ASP TRP THR LEU GLU LEU LEU GLU GLU LEU SEQRES 3 B 96 LYS ASN GLU ALA VAL ARG HIS PHE PRO ARG ILE TRP LEU SEQRES 4 B 96 HIS SER LEU GLY GLN HIS ILE TYR GLU THR TYR GLY ASP SEQRES 5 B 96 THR TRP THR GLY VAL GLU ALA LEU ILE ARG ILE LEU GLN SEQRES 6 B 96 GLN LEU LEU PHE ILE HIS PHE ARG ILE GLY CYS ARG HIS SEQRES 7 B 96 SER ARG ILE GLY ILE ILE GLN GLN ARG ARG THR ARG ASN SEQRES 8 B 96 GLY ALA SER LYS SER HELIX 1 1 GLN A 3 ALA A 24 1 22 HELIX 2 2 VAL A 25 GLN A 38 1 14 HELIX 3 3 GLY A 52 GLN A 64 1 13 HELIX 4 4 GLY A 65 ARG A 71 5 7 HELIX 5 5 GLY A 72 GLY A 100 1 29 HELIX 6 6 GLN A 107 ASP A 143 1 37 HELIX 7 7 GLY A 155 GLY A 168 1 14 HELIX 8 8 GLY A 168 TYR A 173 1 6 HELIX 9 9 PHE A 176 LYS A 198 1 23 HELIX 10 10 GLY A 199 LEU A 201 5 3 HELIX 11 11 HIS A 208 THR A 232 1 25 HELIX 12 12 ARG A 236 SER A 241 1 6 HELIX 13 13 LYS A 244 ILE A 248 5 5 HELIX 14 14 GLY A 252 GLU A 264 1 13 HELIX 15 15 GLY A 265 PHE A 269 5 5 HELIX 16 16 GLY A 272 GLU A 292 1 21 HELIX 17 17 ASN B 16 PHE B 34 1 19 HELIX 18 18 ARG B 36 SER B 41 1 6 HELIX 19 19 SER B 41 GLY B 51 1 11 HELIX 20 20 TRP B 54 ARG B 80 1 27 CISPEP 1 MET B 1 GLU B 2 0 -15.42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 140 0 0 20 0 0 0 6 0 0 0 31 END