HEADER LYASE 20-JAN-05 1YM3 TITLE CRYSTAL STRUCTURE OF CARBONIC ANHYDRASE RV3588C FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE (CARBONATE DEHYDRATASE) (CARBONIC COMPND 3 DEHYDRATASE); COMPND 4 CHAIN: A; COMPND 5 EC: 4.2.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV3588C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCRT7 KEYWDS ZN PROTEIN, STRUCTURAL PROTEOMICS IN EUROPE, SPINE, STRUCTURAL KEYWDS 2 GENOMICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.COVARRUBIAS,A.M.LARSSON,M.HOGBOM,J.LINDBERG,T.BERGFORS, AUTHOR 2 C.BJORKELID,S.L.MOWBRAY,T.UNGE,T.A.JONES,STRUCTURAL PROTEOMICS IN AUTHOR 3 EUROPE (SPINE) REVDAT 6 07-MAR-18 1YM3 1 REMARK REVDAT 5 13-JUL-11 1YM3 1 VERSN REVDAT 4 24-FEB-09 1YM3 1 VERSN REVDAT 3 24-MAY-05 1YM3 1 JRNL REVDAT 2 15-MAR-05 1YM3 1 EXPDTA REVDAT 1 08-MAR-05 1YM3 0 JRNL AUTH A.SUAREZ COVARRUBIAS,A.M.LARSSON,M.HOGBOM,J.LINDBERG, JRNL AUTH 2 T.BERGFORS,C.BJORKELID,S.L.MOWBRAY,T.UNGE,T.A.JONES JRNL TITL STRUCTURE AND FUNCTION OF CARBONIC ANHYDRASES FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.BIOL.CHEM. V. 280 18782 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15753099 JRNL DOI 10.1074/JBC.M414348200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 3 NUMBER OF REFLECTIONS : 13934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 956 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1435 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1468 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1385 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1994 ; 1.484 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3186 ; 0.874 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 193 ; 5.556 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1678 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 300 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 288 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1551 ; 0.229 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 828 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 69 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.007 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.619 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 66 ; 0.322 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 956 ; 0.980 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1532 ; 1.753 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 512 ; 2.682 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 462 ; 4.272 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0998 22.5969 21.0858 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0095 REMARK 3 T33: 0.0326 T12: -0.0001 REMARK 3 T13: -0.0093 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.5139 L22: 0.8383 REMARK 3 L33: 0.9139 L12: 0.1853 REMARK 3 L13: 0.1750 L23: 0.3555 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.0526 S13: -0.0233 REMARK 3 S21: -0.0872 S22: -0.0219 S23: 0.0198 REMARK 3 S31: 0.0856 S32: -0.0211 S33: 0.0009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.085 REMARK 200 MONOCHROMATOR : SINGLE ASYMMETRICALLY CUT REMARK 200 SI(111) CRYSTAL WITH HORIZONTAL REMARK 200 DIFFRACTION PLANE. THE CRYSTAL REMARK 200 IS BENDABLE FOR HORIZONTAL REMARK 200 FOCUSING. REMARK 200 OPTICS : VERTICALLY FOCUSING CYLINDRICAL REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13934 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 26.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 23.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29800 REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1I6O AND 1DDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL2, PEG 400, HEPES, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.09600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.18850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.18850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.04800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.18850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.18850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.14400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.18850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.18850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.04800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.18850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.18850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.14400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.09600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -Y, -X, 1/2-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 56.37700 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 56.37700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.09600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 313 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 32 REMARK 465 ASP A 33 REMARK 465 HIS A 34 REMARK 465 ARG A 35 REMARK 465 ALA A 36 REMARK 465 GLY A 37 REMARK 465 LEU A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 GLY A 41 REMARK 465 VAL A 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 173 O HOH A 399 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 80 OD2 ASP A 80 8665 1.49 REMARK 500 CG ASP A 80 OD1 ASP A 80 8665 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 147 -8.26 -143.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 104 NE2 REMARK 620 2 CYS A 51 SG 119.1 REMARK 620 3 ASP A 53 OD1 90.8 98.7 REMARK 620 4 CYS A 107 SG 111.5 112.1 123.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 O REMARK 620 2 HOH A 305 O 93.1 REMARK 620 3 HIS A 199 ND1 82.9 174.8 REMARK 620 4 HOH A 307 O 172.7 87.7 96.6 REMARK 620 5 HOH A 315 O 94.7 85.2 91.8 92.6 REMARK 620 6 HOH A 303 O 82.9 96.2 86.6 89.8 177.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV3588 RELATED DB: TARGETDB DBREF 1YM3 A 2 207 UNP O53573 O53573_MYCTU 2 207 SEQADV 1YM3 MET A -7 UNP O53573 CLONING ARTIFACT SEQADV 1YM3 ALA A -6 UNP O53573 CLONING ARTIFACT SEQADV 1YM3 HIS A -5 UNP O53573 CLONING ARTIFACT SEQADV 1YM3 HIS A -4 UNP O53573 CLONING ARTIFACT SEQADV 1YM3 HIS A -3 UNP O53573 CLONING ARTIFACT SEQADV 1YM3 HIS A -2 UNP O53573 CLONING ARTIFACT SEQADV 1YM3 HIS A -1 UNP O53573 CLONING ARTIFACT SEQADV 1YM3 HIS A 0 UNP O53573 CLONING ARTIFACT SEQADV 1YM3 GLY A 1 UNP O53573 CLONING ARTIFACT SEQRES 1 A 215 MET ALA HIS HIS HIS HIS HIS HIS GLY PRO ASN THR ASN SEQRES 2 A 215 PRO VAL ALA ALA TRP LYS ALA LEU LYS GLU GLY ASN GLU SEQRES 3 A 215 ARG PHE VAL ALA GLY ARG PRO GLN HIS PRO SER GLN SER SEQRES 4 A 215 VAL ASP HIS ARG ALA GLY LEU ALA ALA GLY GLN LYS PRO SEQRES 5 A 215 THR ALA VAL ILE PHE GLY CYS ALA ASP SER ARG VAL ALA SEQRES 6 A 215 ALA GLU ILE ILE PHE ASP GLN GLY LEU GLY ASP MET PHE SEQRES 7 A 215 VAL VAL ARG THR ALA GLY HIS VAL ILE ASP SER ALA VAL SEQRES 8 A 215 LEU GLY SER ILE GLU TYR ALA VAL THR VAL LEU ASN VAL SEQRES 9 A 215 PRO LEU ILE VAL VAL LEU GLY HIS ASP SER CYS GLY ALA SEQRES 10 A 215 VAL ASN ALA ALA LEU ALA ALA ILE ASN ASP GLY THR LEU SEQRES 11 A 215 PRO GLY GLY TYR VAL ARG ASP VAL VAL GLU ARG VAL ALA SEQRES 12 A 215 PRO SER VAL LEU LEU GLY ARG ARG ASP GLY LEU SER ARG SEQRES 13 A 215 VAL ASP GLU PHE GLU GLN ARG HIS VAL HIS GLU THR VAL SEQRES 14 A 215 ALA ILE LEU MET ALA ARG SER SER ALA ILE SER GLU ARG SEQRES 15 A 215 ILE ALA GLY GLY SER LEU ALA ILE VAL GLY VAL THR TYR SEQRES 16 A 215 GLN LEU ASP ASP GLY ARG ALA VAL LEU ARG ASP HIS ILE SEQRES 17 A 215 GLY ASN ILE GLY GLU GLU VAL HET ZN A 301 1 HET MG A 302 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 2 ZN ZN 2+ FORMUL 3 MG MG 2+ FORMUL 4 HOH *130(H2 O) HELIX 1 1 ASN A 5 GLY A 23 1 19 HELIX 2 2 HIS A 27 SER A 31 5 5 HELIX 3 3 ALA A 57 PHE A 62 1 6 HELIX 4 4 ALA A 75 VAL A 78 5 4 HELIX 5 5 ASP A 80 VAL A 93 1 14 HELIX 6 6 CYS A 107 GLY A 120 1 14 HELIX 7 7 TYR A 126 ASP A 144 1 19 HELIX 8 8 ARG A 148 SER A 168 1 21 HELIX 9 9 SER A 168 GLY A 177 1 10 SHEET 1 A 5 MET A 69 THR A 74 0 SHEET 2 A 5 ALA A 46 CYS A 51 1 N ILE A 48 O VAL A 72 SHEET 3 A 5 LEU A 98 HIS A 104 1 O VAL A 100 N PHE A 49 SHEET 4 A 5 ALA A 181 TYR A 187 1 O VAL A 185 N GLY A 103 SHEET 5 A 5 VAL A 195 ILE A 200 -1 O VAL A 195 N THR A 186 LINK ZN ZN A 301 NE2 HIS A 104 1555 1555 2.05 LINK ZN ZN A 301 SG CYS A 51 1555 1555 2.37 LINK ZN ZN A 301 OD1 ASP A 53 1555 1555 2.10 LINK ZN ZN A 301 SG CYS A 107 1555 1555 2.30 LINK MG MG A 302 O HIS A 199 1555 1555 2.04 LINK MG MG A 302 O HOH A 305 1555 1555 2.05 LINK MG MG A 302 ND1 HIS A 199 1555 1555 2.27 LINK MG MG A 302 O HOH A 307 1555 1555 2.08 LINK MG MG A 302 O HOH A 315 1555 1555 2.13 LINK MG MG A 302 O HOH A 303 1555 1555 2.07 SITE 1 AC1 4 CYS A 51 ASP A 53 HIS A 104 CYS A 107 SITE 1 AC2 5 HIS A 199 HOH A 303 HOH A 305 HOH A 307 SITE 2 AC2 5 HOH A 315 CRYST1 56.377 56.377 104.192 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009598 0.00000 MASTER 405 0 2 9 5 0 3 6 0 0 0 17 END