HEADER OXIDOREDUCTASE 19-JAN-05 1YL6 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DIHYDRODIPICOLINATE TITLE 2 REDUCTASE (RV2773C) (CRYSTAL FORM B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHPR; COMPND 5 EC: 1.3.1.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: DAPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RP; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS LYSINE BIOSYNTHESIS, DIHYDRODIPICOLINATE, REDUCTASE, NADH, STRUCTURAL KEYWDS 2 GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, TBSGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,G.KEFALA,M.S.WEISS,TB STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (TBSGC) REVDAT 5 11-OCT-17 1YL6 1 REMARK REVDAT 4 13-JUL-11 1YL6 1 VERSN REVDAT 3 26-JAN-10 1YL6 1 JRNL REVDAT 2 24-FEB-09 1YL6 1 VERSN REVDAT 1 17-JAN-06 1YL6 0 JRNL AUTH R.JANOWSKI,G.KEFALA,M.S.WEISS JRNL TITL THE STRUCTURE OF DIHYDRODIPICOLINATE REDUCTASE (DAPB) FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS IN THREE CRYSTAL FORMS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 61 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20057050 JRNL DOI 10.1107/S0907444909043960 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 12552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1780 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 48.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.16000 REMARK 3 B22 (A**2) : 1.52000 REMARK 3 B33 (A**2) : -6.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.415 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.330 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.566 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3692 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5038 ; 1.689 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 6.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;40.649 ;23.562 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;18.890 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2794 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1695 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2563 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.250 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.100 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2474 ; 0.739 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3908 ; 1.367 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1296 ; 3.915 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1130 ; 6.644 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 40 A 242 2 REMARK 3 1 B 40 B 242 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 812 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 710 ; 0.35 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 812 ; 0.40 ; 1.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 710 ; 1.15 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 105 REMARK 3 RESIDUE RANGE : A 218 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 63.0214 64.9711 4.6897 REMARK 3 T TENSOR REMARK 3 T11: -0.1661 T22: 0.1264 REMARK 3 T33: -0.1415 T12: -0.1688 REMARK 3 T13: -0.0728 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 3.7206 L22: 3.8409 REMARK 3 L33: 7.0423 L12: 0.6284 REMARK 3 L13: -0.0347 L23: -1.3026 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: 0.0371 S13: 0.1740 REMARK 3 S21: 0.0511 S22: -0.0839 S23: -0.1135 REMARK 3 S31: -0.3089 S32: 0.9997 S33: 0.1877 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 57.5480 47.8004 27.1461 REMARK 3 T TENSOR REMARK 3 T11: -0.3442 T22: -0.0607 REMARK 3 T33: -0.0444 T12: 0.1170 REMARK 3 T13: -0.0201 T23: -0.1320 REMARK 3 L TENSOR REMARK 3 L11: 2.9075 L22: 4.1281 REMARK 3 L33: 2.9535 L12: 1.4363 REMARK 3 L13: 0.1891 L23: 0.1063 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: 0.2878 S13: -0.1834 REMARK 3 S21: 0.0168 S22: 0.3328 S23: -0.6743 REMARK 3 S31: -0.1774 S32: 0.7125 S33: -0.4168 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 105 REMARK 3 RESIDUE RANGE : B 218 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): 49.0405 72.1763 52.5786 REMARK 3 T TENSOR REMARK 3 T11: 0.0692 T22: -0.3059 REMARK 3 T33: -0.2121 T12: 0.0699 REMARK 3 T13: 0.0025 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 3.5993 L22: 5.2191 REMARK 3 L33: 8.2294 L12: -0.6096 REMARK 3 L13: 1.4562 L23: -0.3044 REMARK 3 S TENSOR REMARK 3 S11: -0.1148 S12: -0.1044 S13: -0.0880 REMARK 3 S21: 0.0339 S22: -0.1621 S23: -0.0412 REMARK 3 S31: -1.4034 S32: -0.2714 S33: 0.2770 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 106 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 37.9995 57.8844 30.0157 REMARK 3 T TENSOR REMARK 3 T11: -0.1772 T22: -0.2659 REMARK 3 T33: 0.0057 T12: 0.1851 REMARK 3 T13: 0.1263 T23: 0.0916 REMARK 3 L TENSOR REMARK 3 L11: 3.8116 L22: 3.3834 REMARK 3 L33: 3.7643 L12: 1.4552 REMARK 3 L13: 0.2636 L23: -0.2297 REMARK 3 S TENSOR REMARK 3 S11: 0.1798 S12: 0.1248 S13: 0.5977 REMARK 3 S21: 0.3078 S22: 0.0256 S23: 0.6469 REMARK 3 S31: -0.6766 S32: -0.3061 S33: -0.2054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT REMARK 4 REMARK 4 1YL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL (SI111, SI220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 31.10 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1P9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/HCL, 24 % PEG 3350, 140 MM REMARK 280 MGCL2, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.56500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.56500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY (TETRAMER) IS REMARK 300 GENERATED BY THE TWO FOLD AXIS: 1/2, 1/2, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 87.13000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.46000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 30 137.72 -173.67 REMARK 500 ALA A 34 109.02 -38.35 REMARK 500 HIS A 54 139.62 -29.83 REMARK 500 THR A 77 -149.13 -100.36 REMARK 500 LYS A 156 91.86 -60.54 REMARK 500 ASP A 163 109.62 -172.63 REMARK 500 ASP A 178 51.26 38.56 REMARK 500 VAL A 191 -98.04 -113.27 REMARK 500 ASP A 243 73.45 36.08 REMARK 500 HIS B 54 139.86 -30.18 REMARK 500 THR B 77 -151.53 -95.64 REMARK 500 LYS B 156 93.20 -67.70 REMARK 500 ASP B 163 110.64 -174.47 REMARK 500 VAL B 191 -90.31 -110.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 246 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 21 O REMARK 620 2 ALA A 23 O 74.9 REMARK 620 3 VAL A 20 O 63.3 74.1 REMARK 620 4 LEU A 26 O 140.0 77.4 81.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 246 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 21 O REMARK 620 2 ALA B 23 O 90.1 REMARK 620 3 LEU B 26 O 155.7 86.0 REMARK 620 4 VAL B 20 O 65.9 83.9 89.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YL5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DIHYDRODIPICOLINATE REMARK 900 REDUCTASE (RV2773C) (CRYSTAL FORM A) REMARK 900 RELATED ID: 1YL7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DIHYDRODIPICOLINATE REMARK 900 REDUCTASE (RV2773C) IN COMPLEX WITH NADH (CRYSTAL FORM C) REMARK 900 RELATED ID: RV2773C RELATED DB: TARGETDB DBREF 1YL6 A 2 245 UNP P72024 DAPB_MYCTU 2 245 DBREF 1YL6 B 2 245 UNP P72024 DAPB_MYCTU 2 245 SEQADV 1YL6 ALA A 1 UNP P72024 CLONING ARTIFACT SEQADV 1YL6 ALA B 1 UNP P72024 CLONING ARTIFACT SEQRES 1 A 245 ALA ARG VAL GLY VAL LEU GLY ALA LYS GLY LYS VAL GLY SEQRES 2 A 245 ALA THR MET VAL ARG ALA VAL ALA ALA ALA ASP ASP LEU SEQRES 3 A 245 THR LEU SER ALA GLU LEU ASP ALA GLY ASP PRO LEU SER SEQRES 4 A 245 LEU LEU THR ASP GLY ASN THR GLU VAL VAL ILE ASP PHE SEQRES 5 A 245 THR HIS PRO ASP VAL VAL MET GLY ASN LEU GLU PHE LEU SEQRES 6 A 245 ILE ASP ASN GLY ILE HIS ALA VAL VAL GLY THR THR GLY SEQRES 7 A 245 PHE THR ALA GLU ARG PHE GLN GLN VAL GLU SER TRP LEU SEQRES 8 A 245 VAL ALA LYS PRO ASN THR SER VAL LEU ILE ALA PRO ASN SEQRES 9 A 245 PHE ALA ILE GLY ALA VAL LEU SER MET HIS PHE ALA LYS SEQRES 10 A 245 GLN ALA ALA ARG PHE PHE ASP SER ALA GLU VAL ILE GLU SEQRES 11 A 245 LEU HIS HIS PRO HIS LYS ALA ASP ALA PRO SER GLY THR SEQRES 12 A 245 ALA ALA ARG THR ALA LYS LEU ILE ALA GLU ALA ARG LYS SEQRES 13 A 245 GLY LEU PRO PRO ASN PRO ASP ALA THR SER THR SER LEU SEQRES 14 A 245 PRO GLY ALA ARG GLY ALA ASP VAL ASP GLY ILE PRO VAL SEQRES 15 A 245 HIS ALA VAL ARG LEU ALA GLY LEU VAL ALA HIS GLN GLU SEQRES 16 A 245 VAL LEU PHE GLY THR GLU GLY GLU THR LEU THR ILE ARG SEQRES 17 A 245 HIS ASP SER LEU ASP ARG THR SER PHE VAL PRO GLY VAL SEQRES 18 A 245 LEU LEU ALA VAL ARG ARG ILE ALA GLU ARG PRO GLY LEU SEQRES 19 A 245 THR VAL GLY LEU GLU PRO LEU LEU ASP LEU HIS SEQRES 1 B 245 ALA ARG VAL GLY VAL LEU GLY ALA LYS GLY LYS VAL GLY SEQRES 2 B 245 ALA THR MET VAL ARG ALA VAL ALA ALA ALA ASP ASP LEU SEQRES 3 B 245 THR LEU SER ALA GLU LEU ASP ALA GLY ASP PRO LEU SER SEQRES 4 B 245 LEU LEU THR ASP GLY ASN THR GLU VAL VAL ILE ASP PHE SEQRES 5 B 245 THR HIS PRO ASP VAL VAL MET GLY ASN LEU GLU PHE LEU SEQRES 6 B 245 ILE ASP ASN GLY ILE HIS ALA VAL VAL GLY THR THR GLY SEQRES 7 B 245 PHE THR ALA GLU ARG PHE GLN GLN VAL GLU SER TRP LEU SEQRES 8 B 245 VAL ALA LYS PRO ASN THR SER VAL LEU ILE ALA PRO ASN SEQRES 9 B 245 PHE ALA ILE GLY ALA VAL LEU SER MET HIS PHE ALA LYS SEQRES 10 B 245 GLN ALA ALA ARG PHE PHE ASP SER ALA GLU VAL ILE GLU SEQRES 11 B 245 LEU HIS HIS PRO HIS LYS ALA ASP ALA PRO SER GLY THR SEQRES 12 B 245 ALA ALA ARG THR ALA LYS LEU ILE ALA GLU ALA ARG LYS SEQRES 13 B 245 GLY LEU PRO PRO ASN PRO ASP ALA THR SER THR SER LEU SEQRES 14 B 245 PRO GLY ALA ARG GLY ALA ASP VAL ASP GLY ILE PRO VAL SEQRES 15 B 245 HIS ALA VAL ARG LEU ALA GLY LEU VAL ALA HIS GLN GLU SEQRES 16 B 245 VAL LEU PHE GLY THR GLU GLY GLU THR LEU THR ILE ARG SEQRES 17 B 245 HIS ASP SER LEU ASP ARG THR SER PHE VAL PRO GLY VAL SEQRES 18 B 245 LEU LEU ALA VAL ARG ARG ILE ALA GLU ARG PRO GLY LEU SEQRES 19 B 245 THR VAL GLY LEU GLU PRO LEU LEU ASP LEU HIS HET MG A 246 1 HET MG B 246 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *2(H2 O) HELIX 1 1 GLY A 10 ALA A 23 1 14 HELIX 2 2 SER A 39 GLY A 44 1 6 HELIX 3 3 HIS A 54 ASN A 68 1 15 HELIX 4 4 THR A 80 LYS A 94 1 15 HELIX 5 5 ALA A 106 ALA A 120 1 15 HELIX 6 6 ARG A 121 PHE A 123 5 3 HELIX 7 7 SER A 141 ARG A 155 1 15 HELIX 8 8 PHE A 217 ILE A 228 1 12 HELIX 9 9 ALA A 229 ARG A 231 5 3 HELIX 10 10 LEU A 238 ASP A 243 5 6 HELIX 11 11 GLY B 10 ALA B 23 1 14 HELIX 12 12 LEU B 38 GLY B 44 1 7 HELIX 13 13 HIS B 54 ASN B 68 1 15 HELIX 14 14 THR B 80 LYS B 94 1 15 HELIX 15 15 ALA B 106 ALA B 120 1 15 HELIX 16 16 ARG B 121 PHE B 123 5 3 HELIX 17 17 SER B 141 ARG B 155 1 15 HELIX 18 18 PHE B 217 ILE B 228 1 12 HELIX 19 19 ALA B 229 ARG B 231 5 3 HELIX 20 20 LEU B 238 ASP B 243 5 6 SHEET 1 A 6 THR A 27 GLU A 31 0 SHEET 2 A 6 ARG A 2 VAL A 5 1 N VAL A 3 O SER A 29 SHEET 3 A 6 VAL A 48 ASP A 51 1 O VAL A 48 N GLY A 4 SHEET 4 A 6 HIS A 71 VAL A 74 1 O VAL A 73 N ASP A 51 SHEET 5 A 6 SER A 98 ILE A 101 1 O LEU A 100 N ALA A 72 SHEET 6 A 6 GLY A 233 VAL A 236 1 O THR A 235 N VAL A 99 SHEET 1 B 9 ALA A 175 VAL A 177 0 SHEET 2 B 9 ILE A 180 ARG A 186 -1 O VAL A 182 N ALA A 175 SHEET 3 B 9 SER A 125 HIS A 132 1 N GLU A 130 O VAL A 185 SHEET 4 B 9 ALA A 192 THR A 200 -1 O GLU A 195 N ILE A 129 SHEET 5 B 9 GLU A 203 SER A 211 -1 O SER A 211 N ALA A 192 SHEET 6 B 9 GLU B 203 SER B 211 -1 O ASP B 210 N THR A 204 SHEET 7 B 9 ALA B 192 THR B 200 -1 N ALA B 192 O SER B 211 SHEET 8 B 9 SER B 125 HIS B 132 -1 N ILE B 129 O GLU B 195 SHEET 9 B 9 VAL B 182 ARG B 186 1 O VAL B 185 N GLU B 130 SHEET 1 C 6 THR B 27 LEU B 32 0 SHEET 2 C 6 ARG B 2 LEU B 6 1 N VAL B 3 O SER B 29 SHEET 3 C 6 VAL B 48 ASP B 51 1 O VAL B 48 N GLY B 4 SHEET 4 C 6 HIS B 71 VAL B 74 1 O VAL B 73 N VAL B 49 SHEET 5 C 6 SER B 98 ILE B 101 1 O LEU B 100 N VAL B 74 SHEET 6 C 6 GLY B 233 VAL B 236 1 O THR B 235 N VAL B 99 LINK MG MG A 246 O ALA A 21 1555 1555 2.80 LINK MG MG A 246 O ALA A 23 1555 1555 2.48 LINK MG MG A 246 O VAL A 20 1555 1555 2.93 LINK MG MG A 246 O LEU A 26 1555 1555 2.20 LINK MG MG B 246 O ALA B 21 1555 1555 3.00 LINK MG MG B 246 O ALA B 23 1555 1555 2.62 LINK MG MG B 246 O LEU B 26 1555 1555 2.17 LINK MG MG B 246 O VAL B 20 1555 1555 2.74 CISPEP 1 ALA A 139 PRO A 140 0 6.07 CISPEP 2 ALA B 139 PRO B 140 0 4.53 SITE 1 AC1 4 VAL A 20 ALA A 21 ALA A 23 LEU A 26 SITE 1 AC2 4 VAL B 20 ALA B 21 ALA B 23 LEU B 26 CRYST1 87.130 89.460 77.520 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012900 0.00000 MASTER 400 0 2 20 21 0 2 6 0 0 0 38 END