HEADER GENE REGULATION 18-JAN-05 1YKE TITLE STRUCTURE OF THE MEDIATOR MED7/MED21 SUBCOMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN MED7; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 102-205; COMPND 5 SYNONYM: RNA POLYMERASE II TRANSCRIPTIONAL REGULATION COMPND 6 MEDIATOR 7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA POLYMERASE II HOLOENZYME COMPONENT SRB7; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: MED21, RNAPII COMPLEX COMPONENT SRB7, SUPPRESSOR COMPND 12 OF RNA POLYMERASE B SRB7; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24D; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR S.BAUMLI,S.HOEPPNER,P.CRAMER REVDAT 3 24-FEB-09 1YKE 1 VERSN REVDAT 2 21-JUN-05 1YKE 1 JRNL REVDAT 1 22-FEB-05 1YKE 0 JRNL AUTH S.BAUMLI,S.HOEPPNER,P.CRAMER JRNL TITL A CONSERVED MEDIATOR HINGE REVEALED IN THE JRNL TITL 2 STRUCTURE OF THE MED7.MED21 (MED7.SRB7) JRNL TITL 3 HETERODIMER. JRNL REF J.BIOL.CHEM. V. 280 18171 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15710619 JRNL DOI 10.1074/JBC.M413466200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.36 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YKE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-05. REMARK 100 THE RCSB ID CODE IS RCSB031615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20641 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, PEG 6000, ETHANOL, REMARK 280 B-MERCAPTOETHANOL, EDTA, PH 8.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.07850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.07850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.72800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.42950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.72800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.42950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.07850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.72800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.42950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.07850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.72800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.42950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PRESUMED BIOLOGICAL UNIT CONSISTS OF MED7 AND MED21 REMARK 300 AS A HETERODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 98 REMARK 465 ALA A 99 REMARK 465 SER A 100 REMARK 465 MET A 101 REMARK 465 LYS A 102 REMARK 465 LYS A 103 REMARK 465 SER A 104 REMARK 465 THR A 105 REMARK 465 GLU A 106 REMARK 465 ASN A 107 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 36 REMARK 465 VAL B 37 REMARK 465 ASN B 38 REMARK 465 GLU B 39 REMARK 465 PRO B 40 REMARK 465 GLN B 41 REMARK 465 MET B 42 REMARK 465 SER B 43 REMARK 465 ASP B 44 REMARK 465 LYS B 45 REMARK 465 HIS B 46 REMARK 465 ALA B 47 REMARK 465 ALA B 134 REMARK 465 ASN B 135 REMARK 465 SER B 136 REMARK 465 LYS B 137 REMARK 465 LYS B 138 REMARK 465 SER B 139 REMARK 465 THR B 140 REMARK 465 ALA B 141 REMARK 465 ALA B 142 REMARK 465 ALA B 143 REMARK 465 LEU B 144 REMARK 465 GLU B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 MET C 98 REMARK 465 ALA C 99 REMARK 465 SER C 100 REMARK 465 MET C 101 REMARK 465 LYS C 102 REMARK 465 LYS C 103 REMARK 465 SER C 104 REMARK 465 THR C 105 REMARK 465 GLU C 106 REMARK 465 ASN C 107 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ARG D 34 REMARK 465 LEU D 35 REMARK 465 THR D 36 REMARK 465 VAL D 37 REMARK 465 ASN D 38 REMARK 465 GLU D 39 REMARK 465 PRO D 40 REMARK 465 GLN D 41 REMARK 465 MET D 42 REMARK 465 SER D 43 REMARK 465 ASP D 44 REMARK 465 LYS D 45 REMARK 465 HIS D 46 REMARK 465 ALA D 47 REMARK 465 THR D 48 REMARK 465 ASP D 131 REMARK 465 GLY D 132 REMARK 465 ILE D 133 REMARK 465 ALA D 134 REMARK 465 ASN D 135 REMARK 465 SER D 136 REMARK 465 LYS D 137 REMARK 465 LYS D 138 REMARK 465 SER D 139 REMARK 465 THR D 140 REMARK 465 ALA D 141 REMARK 465 ALA D 142 REMARK 465 ALA D 143 REMARK 465 LEU D 144 REMARK 465 GLU D 145 REMARK 465 HIS D 146 REMARK 465 HIS D 147 REMARK 465 HIS D 148 REMARK 465 HIS D 149 REMARK 465 HIS D 150 REMARK 465 HIS D 151 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 152 NH1 ARG A 152 4555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 111 116.69 -24.14 REMARK 500 LEU A 161 -72.32 -70.98 REMARK 500 ARG B 4 -56.22 -139.44 REMARK 500 THR B 22 -64.82 -102.71 REMARK 500 ASN B 29 36.01 -143.86 REMARK 500 PRO B 52 -10.00 -58.29 REMARK 500 SER C 109 23.69 -64.85 REMARK 500 LEU C 133 17.71 -68.14 REMARK 500 PRO C 141 -33.44 -24.81 REMARK 500 TYR C 144 -27.97 -38.21 REMARK 500 ARG C 190 -13.14 -47.83 REMARK 500 GLN C 194 -73.23 -57.54 REMARK 500 VAL C 195 -40.88 -29.70 REMARK 500 LYS C 202 -19.05 -42.86 REMARK 500 THR C 204 -60.15 -121.44 REMARK 500 ARG D 4 -51.37 -170.35 REMARK 500 ASP D 27 -55.63 -152.60 REMARK 500 HIS D 30 74.86 58.52 REMARK 500 PHE D 32 -76.84 -52.15 REMARK 500 PRO D 51 150.36 -41.36 REMARK 500 PHE D 55 -82.67 -64.20 REMARK 500 THR D 58 -33.03 -151.78 REMARK 500 ARG D 92 31.28 -82.14 REMARK 500 MET D 96 16.11 -53.93 REMARK 500 LEU D 97 -59.98 -128.27 REMARK 500 LYS D 99 -81.82 -64.25 REMARK 500 LYS D 100 -34.58 -29.54 REMARK 500 ASP D 106 26.26 -77.67 REMARK 500 GLU D 107 -15.80 -155.00 REMARK 500 GLU D 110 -71.04 -37.22 REMARK 500 PHE D 129 37.91 -65.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YKH RELATED DB: PDB REMARK 900 THE SAME PROTEIN INCLUDING L5M/L119M AND L125M MUTATIONS DBREF 1YKE A 102 205 UNP Q08278 MED7_YEAST 102 205 DBREF 1YKE B 1 140 UNP P47822 SRB7_YEAST 1 140 DBREF 1YKE C 102 205 UNP Q08278 MED7_YEAST 102 205 DBREF 1YKE D 1 140 UNP P47822 SRB7_YEAST 1 140 SEQADV 1YKE MET A 98 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE ALA A 99 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE SER A 100 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE MET A 101 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE ALA B 141 UNP P47822 EXPRESSION TAG SEQADV 1YKE ALA B 142 UNP P47822 EXPRESSION TAG SEQADV 1YKE ALA B 143 UNP P47822 EXPRESSION TAG SEQADV 1YKE LEU B 144 UNP P47822 EXPRESSION TAG SEQADV 1YKE GLU B 145 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 146 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 147 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 148 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 149 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 150 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 151 UNP P47822 EXPRESSION TAG SEQADV 1YKE MET C 98 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE ALA C 99 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE SER C 100 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE MET C 101 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE ALA D 141 UNP P47822 EXPRESSION TAG SEQADV 1YKE ALA D 142 UNP P47822 EXPRESSION TAG SEQADV 1YKE ALA D 143 UNP P47822 EXPRESSION TAG SEQADV 1YKE LEU D 144 UNP P47822 EXPRESSION TAG SEQADV 1YKE GLU D 145 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 146 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 147 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 148 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 149 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 150 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 151 UNP P47822 EXPRESSION TAG SEQRES 1 A 108 MET ALA SER MET LYS LYS SER THR GLU ASN GLU SER THR SEQRES 2 A 108 ASN TYR GLN TYR LYS ILE GLN GLU LEU ARG LYS LEU LEU SEQRES 3 A 108 LYS SER LEU LEU LEU ASN TYR LEU GLU LEU ILE GLY VAL SEQRES 4 A 108 LEU SER ILE ASN PRO ASP MET TYR GLU ARG LYS VAL GLU SEQRES 5 A 108 ASN ILE ARG THR ILE LEU VAL ASN ILE HIS HIS LEU LEU SEQRES 6 A 108 ASN GLU TYR ARG PRO HIS GLN SER ARG GLU SER LEU ILE SEQRES 7 A 108 MET LEU LEU GLU GLU GLN LEU GLU TYR LYS ARG GLY GLU SEQRES 8 A 108 ILE ARG GLU ILE GLU GLN VAL CYS LYS GLN VAL HIS ASP SEQRES 9 A 108 LYS LEU THR SER SEQRES 1 B 151 MET THR ASP ARG LEU THR GLN LEU GLN ILE CYS LEU ASP SEQRES 2 B 151 GLN MET THR GLU GLN PHE CYS ALA THR LEU ASN TYR ILE SEQRES 3 B 151 ASP LYS ASN HIS GLY PHE GLU ARG LEU THR VAL ASN GLU SEQRES 4 B 151 PRO GLN MET SER ASP LYS HIS ALA THR VAL VAL PRO PRO SEQRES 5 B 151 GLU GLU PHE SER ASN THR ILE ASP GLU LEU SER THR ASP SEQRES 6 B 151 ILE ILE LEU LYS THR ARG GLN ILE ASN LYS LEU ILE ASP SEQRES 7 B 151 SER LEU PRO GLY VAL ASP VAL SER ALA GLU GLU GLN LEU SEQRES 8 B 151 ARG LYS ILE ASP MET LEU GLN LYS LYS LEU VAL GLU VAL SEQRES 9 B 151 GLU ASP GLU LYS ILE GLU ALA ILE LYS LYS LYS GLU LYS SEQRES 10 B 151 LEU LEU ARG HIS VAL ASP SER LEU ILE GLU ASP PHE VAL SEQRES 11 B 151 ASP GLY ILE ALA ASN SER LYS LYS SER THR ALA ALA ALA SEQRES 12 B 151 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 108 MET ALA SER MET LYS LYS SER THR GLU ASN GLU SER THR SEQRES 2 C 108 ASN TYR GLN TYR LYS ILE GLN GLU LEU ARG LYS LEU LEU SEQRES 3 C 108 LYS SER LEU LEU LEU ASN TYR LEU GLU LEU ILE GLY VAL SEQRES 4 C 108 LEU SER ILE ASN PRO ASP MET TYR GLU ARG LYS VAL GLU SEQRES 5 C 108 ASN ILE ARG THR ILE LEU VAL ASN ILE HIS HIS LEU LEU SEQRES 6 C 108 ASN GLU TYR ARG PRO HIS GLN SER ARG GLU SER LEU ILE SEQRES 7 C 108 MET LEU LEU GLU GLU GLN LEU GLU TYR LYS ARG GLY GLU SEQRES 8 C 108 ILE ARG GLU ILE GLU GLN VAL CYS LYS GLN VAL HIS ASP SEQRES 9 C 108 LYS LEU THR SER SEQRES 1 D 151 MET THR ASP ARG LEU THR GLN LEU GLN ILE CYS LEU ASP SEQRES 2 D 151 GLN MET THR GLU GLN PHE CYS ALA THR LEU ASN TYR ILE SEQRES 3 D 151 ASP LYS ASN HIS GLY PHE GLU ARG LEU THR VAL ASN GLU SEQRES 4 D 151 PRO GLN MET SER ASP LYS HIS ALA THR VAL VAL PRO PRO SEQRES 5 D 151 GLU GLU PHE SER ASN THR ILE ASP GLU LEU SER THR ASP SEQRES 6 D 151 ILE ILE LEU LYS THR ARG GLN ILE ASN LYS LEU ILE ASP SEQRES 7 D 151 SER LEU PRO GLY VAL ASP VAL SER ALA GLU GLU GLN LEU SEQRES 8 D 151 ARG LYS ILE ASP MET LEU GLN LYS LYS LEU VAL GLU VAL SEQRES 9 D 151 GLU ASP GLU LYS ILE GLU ALA ILE LYS LYS LYS GLU LYS SEQRES 10 D 151 LEU LEU ARG HIS VAL ASP SER LEU ILE GLU ASP PHE VAL SEQRES 11 D 151 ASP GLY ILE ALA ASN SER LYS LYS SER THR ALA ALA ALA SEQRES 12 D 151 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 111 ILE A 134 1 24 HELIX 2 2 ASN A 140 TYR A 165 1 26 HELIX 3 3 TYR A 165 THR A 204 1 40 HELIX 4 4 ARG B 4 PHE B 19 1 16 HELIX 5 5 THR B 22 ASN B 29 1 8 HELIX 6 6 HIS B 30 LEU B 35 5 6 HELIX 7 7 PRO B 51 LEU B 80 1 30 HELIX 8 8 SER B 86 ASP B 128 1 43 HELIX 9 9 ASN C 111 LEU C 133 1 23 HELIX 10 10 MET C 143 LEU C 162 1 20 HELIX 11 11 TYR C 165 LEU C 203 1 39 HELIX 12 12 ARG D 4 ILE D 26 1 23 HELIX 13 13 PHE D 55 LEU D 80 1 26 HELIX 14 14 SER D 86 PHE D 129 1 44 CRYST1 121.456 128.859 170.157 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005877 0.00000 MASTER 424 0 0 14 0 0 0 6 0 0 0 42 END