HEADER HYDROLASE REGULATOR 30-DEC-04 1YF2 TITLE THREE-DIMENSIONAL STRUCTURE OF DNA SEQUENCE SPECIFICITY (S) SUBUNIT OF TITLE 2 A TYPE I RESTRICTION-MODIFICATION ENZYME AND ITS FUNCTIONAL TITLE 3 IMPLICATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE I RESTRICTION-MODIFICATION ENZYME, S SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: DSM 2661; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PB3 KEYWDS TYPE I RESTRICTION MODIFICATION ENZYME, S-SUBUNIT, STRUCTURAL KEYWDS 2 GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, BERKELEY STRUCTURAL KEYWDS 3 GENOMICS CENTER, BSGC, HYDROLASE REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR J.S.KIM,A.DEGIOVANNI,J.JANCARIK,P.D.ADAMS,H.A.YOKOTA,R.KIM,S.H.KIM, AUTHOR 2 BERKELEY STRUCTURAL GENOMICS CENTER (BSGC) REVDAT 4 13-JUL-11 1YF2 1 VERSN REVDAT 3 24-FEB-09 1YF2 1 VERSN REVDAT 2 15-MAR-05 1YF2 1 JRNL REVDAT 1 15-FEB-05 1YF2 0 JRNL AUTH J.S.KIM,A.DEGIOVANNI,J.JANCARIK,P.D.ADAMS,H.YOKOTA,R.KIM, JRNL AUTH 2 S.H.KIM JRNL TITL CRYSTAL STRUCTURE OF DNA SEQUENCE SPECIFICITY SUBUNIT OF A JRNL TITL 2 TYPE I RESTRICTION-MODIFICATION ENZYME AND ITS FUNCTIONAL JRNL TITL 3 IMPLICATIONS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 3248 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15728358 JRNL DOI 10.1073/PNAS.0409851102 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 361731.160 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 50597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5128 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6650 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 765 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.80000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : 5.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.98 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 60.65 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-05. REMARK 100 THE RCSB ID CODE IS RCSB031442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59867 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 26.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000, PH 9.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.11100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CB CG SD CE REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 MET B 1 CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 3 108.44 -59.40 REMARK 500 LYS A 4 -70.62 -76.31 REMARK 500 ASN A 7 -154.55 56.16 REMARK 500 LYS A 10 -157.66 -69.07 REMARK 500 THR A 11 74.57 -179.73 REMARK 500 GLU A 15 103.27 -54.97 REMARK 500 LYS A 31 118.35 -166.63 REMARK 500 LYS A 39 97.43 -40.92 REMARK 500 LYS A 47 103.21 -38.48 REMARK 500 LYS A 64 -65.44 71.97 REMARK 500 SER A 98 73.21 -102.86 REMARK 500 ASN A 123 10.31 58.33 REMARK 500 LEU A 144 33.33 -141.78 REMARK 500 GLN A 147 -71.28 -62.23 REMARK 500 THR A 148 -84.73 -146.93 REMARK 500 GLN A 150 107.87 -59.80 REMARK 500 ASN A 152 -95.07 -60.25 REMARK 500 LEU A 153 118.41 -165.94 REMARK 500 SER A 246 130.45 -27.94 REMARK 500 GLU A 271 -7.28 71.86 REMARK 500 ALA A 306 -144.69 56.06 REMARK 500 PRO A 307 94.47 -59.47 REMARK 500 GLU A 317 151.11 -47.24 REMARK 500 ASN A 332 39.39 -76.51 REMARK 500 SER A 358 -172.77 -179.62 REMARK 500 PHE A 360 82.00 58.45 REMARK 500 LEU A 417 5.81 -68.33 REMARK 500 LYS A 420 -65.83 -138.63 REMARK 500 GLU B 12 110.59 166.74 REMARK 500 ILE B 13 41.32 37.10 REMARK 500 TRP B 20 -167.58 -63.84 REMARK 500 GLU B 21 109.99 -170.14 REMARK 500 LYS B 31 127.54 -171.49 REMARK 500 LYS B 39 117.63 -31.18 REMARK 500 SER B 41 25.27 -78.09 REMARK 500 GLU B 44 -19.52 -46.19 REMARK 500 LYS B 47 -72.07 -9.71 REMARK 500 LYS B 64 -62.25 69.30 REMARK 500 MET B 95 -70.72 -91.67 REMARK 500 GLN B 147 -167.27 -129.25 REMARK 500 THR B 148 88.31 58.97 REMARK 500 THR B 149 -9.57 61.85 REMARK 500 ASN B 152 -179.71 79.95 REMARK 500 LYS B 159 0.57 -67.77 REMARK 500 SER B 246 121.87 -35.73 REMARK 500 LYS B 249 88.70 -57.67 REMARK 500 GLU B 251 6.93 -69.13 REMARK 500 ASN B 255 86.29 65.20 REMARK 500 GLU B 257 -34.44 -132.40 REMARK 500 GLU B 271 -3.06 66.79 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 446 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 452 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH A 468 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH A 474 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 477 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 488 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 496 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH A 500 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A 501 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 502 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 503 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH A 506 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH A 507 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 24.68 ANGSTROMS REMARK 525 HOH A 512 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A 513 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 515 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A 516 DISTANCE = 8.94 ANGSTROMS REMARK 525 HOH A 517 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 519 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 520 DISTANCE = 9.20 ANGSTROMS REMARK 525 HOH A 524 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A 529 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A 530 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 531 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A 532 DISTANCE = 10.29 ANGSTROMS REMARK 525 HOH A 535 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH A 539 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 562 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH A 565 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH B 465 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH B 467 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 468 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH B 469 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH B 470 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH B 479 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 510 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH B 516 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B 520 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH B 526 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B 541 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH B 542 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH B 547 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 549 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 550 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH B 552 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH B 562 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH B 580 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH B 600 DISTANCE = 5.64 ANGSTROMS REMARK 525 HOH B 602 DISTANCE = 5.06 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BSGCAIR30591 RELATED DB: TARGETDB DBREF 1YF2 A 1 425 UNP Q57594 Y130_METJA 1 425 DBREF 1YF2 B 1 425 UNP Q57594 Y130_METJA 1 425 SEQRES 1 A 425 MET PHE TYR LYS GLU GLU ASN PHE LYS LYS THR GLU ILE SEQRES 2 A 425 GLY GLU ILE PRO GLU ASP TRP GLU ILE VAL GLU LEU LYS SEQRES 3 A 425 ASP VAL CYS LYS LYS ILE LYS ALA GLY GLY THR PRO LYS SEQRES 4 A 425 THR SER VAL GLU GLU TYR TYR LYS ASN GLY THR ILE PRO SEQRES 5 A 425 PHE VAL LYS ILE GLU ASP ILE THR ASN SER ASN LYS TYR SEQRES 6 A 425 LEU THR ASN THR LYS ILE LYS ILE THR GLU GLU GLY LEU SEQRES 7 A 425 ASN ASN SER ASN ALA TRP ILE VAL PRO LYS ASN SER VAL SEQRES 8 A 425 LEU PHE ALA MET TYR GLY SER ILE GLY GLU THR ALA ILE SEQRES 9 A 425 ASN LYS ILE GLU VAL ALA THR ASN GLN ALA ILE LEU GLY SEQRES 10 A 425 ILE ILE PRO LYS ASP ASN ILE LEU GLU SER GLU PHE LEU SEQRES 11 A 425 TYR TYR ILE LEU ALA LYS ASN LYS ASN TYR TYR SER LYS SEQRES 12 A 425 LEU GLY MET GLN THR THR GLN LYS ASN LEU ASN ALA GLN SEQRES 13 A 425 ILE VAL LYS SER PHE LYS ILE PRO LEU PRO PRO LEU GLU SEQRES 14 A 425 GLU GLN LYS GLN ILE ALA LYS ILE LEU THR LYS ILE ASP SEQRES 15 A 425 GLU GLY ILE GLU ILE ILE GLU LYS SER ILE ASN LYS LEU SEQRES 16 A 425 GLU ARG ILE LYS LYS GLY LEU MET HIS LYS LEU LEU THR SEQRES 17 A 425 LYS GLY ILE GLY HIS SER ARG PHE LYS LYS SER GLU ILE SEQRES 18 A 425 GLY GLU ILE PRO GLU ASP TRP GLU VAL PHE GLU ILE LYS SEQRES 19 A 425 ASP ILE PHE GLU VAL LYS THR GLY THR THR PRO SER THR SEQRES 20 A 425 LYS LYS SER GLU TYR TRP GLU ASN GLY GLU ILE ASN TRP SEQRES 21 A 425 ILE THR PRO LEU ASP LEU SER ARG LEU ASN GLU LYS ILE SEQRES 22 A 425 TYR ILE GLY SER SER GLU ARG LYS VAL THR LYS ILE ALA SEQRES 23 A 425 LEU GLU LYS CYS ASN LEU ASN LEU ILE PRO LYS GLY SER SEQRES 24 A 425 ILE ILE ILE SER THR ARG ALA PRO VAL GLY TYR VAL ALA SEQRES 25 A 425 VAL LEU THR VAL GLU SER THR PHE ASN GLN GLY CYS LYS SEQRES 26 A 425 GLY LEU PHE GLN LYS ASN ASN ASP SER VAL ASN THR GLU SEQRES 27 A 425 PHE TYR ALA TYR TYR LEU LYS PHE LYS LYS ASN LEU LEU SEQRES 28 A 425 GLU ASN LEU SER GLY GLY SER THR PHE LYS GLU LEU SER SEQRES 29 A 425 LYS SER MET LEU GLU ASN PHE LYS ILE PRO LEU PRO PRO SEQRES 30 A 425 LEU GLU GLU GLN LYS GLN ILE ALA LYS ILE LEU SER SER SEQRES 31 A 425 VAL ASP LYS SER ILE GLU LEU LYS LYS GLN LYS LYS GLU SEQRES 32 A 425 LYS LEU GLN ARG MET LYS LYS LYS ILE MET GLU LEU LEU SEQRES 33 A 425 LEU THR GLY LYS VAL ARG VAL LYS THR SEQRES 1 B 425 MET PHE TYR LYS GLU GLU ASN PHE LYS LYS THR GLU ILE SEQRES 2 B 425 GLY GLU ILE PRO GLU ASP TRP GLU ILE VAL GLU LEU LYS SEQRES 3 B 425 ASP VAL CYS LYS LYS ILE LYS ALA GLY GLY THR PRO LYS SEQRES 4 B 425 THR SER VAL GLU GLU TYR TYR LYS ASN GLY THR ILE PRO SEQRES 5 B 425 PHE VAL LYS ILE GLU ASP ILE THR ASN SER ASN LYS TYR SEQRES 6 B 425 LEU THR ASN THR LYS ILE LYS ILE THR GLU GLU GLY LEU SEQRES 7 B 425 ASN ASN SER ASN ALA TRP ILE VAL PRO LYS ASN SER VAL SEQRES 8 B 425 LEU PHE ALA MET TYR GLY SER ILE GLY GLU THR ALA ILE SEQRES 9 B 425 ASN LYS ILE GLU VAL ALA THR ASN GLN ALA ILE LEU GLY SEQRES 10 B 425 ILE ILE PRO LYS ASP ASN ILE LEU GLU SER GLU PHE LEU SEQRES 11 B 425 TYR TYR ILE LEU ALA LYS ASN LYS ASN TYR TYR SER LYS SEQRES 12 B 425 LEU GLY MET GLN THR THR GLN LYS ASN LEU ASN ALA GLN SEQRES 13 B 425 ILE VAL LYS SER PHE LYS ILE PRO LEU PRO PRO LEU GLU SEQRES 14 B 425 GLU GLN LYS GLN ILE ALA LYS ILE LEU THR LYS ILE ASP SEQRES 15 B 425 GLU GLY ILE GLU ILE ILE GLU LYS SER ILE ASN LYS LEU SEQRES 16 B 425 GLU ARG ILE LYS LYS GLY LEU MET HIS LYS LEU LEU THR SEQRES 17 B 425 LYS GLY ILE GLY HIS SER ARG PHE LYS LYS SER GLU ILE SEQRES 18 B 425 GLY GLU ILE PRO GLU ASP TRP GLU VAL PHE GLU ILE LYS SEQRES 19 B 425 ASP ILE PHE GLU VAL LYS THR GLY THR THR PRO SER THR SEQRES 20 B 425 LYS LYS SER GLU TYR TRP GLU ASN GLY GLU ILE ASN TRP SEQRES 21 B 425 ILE THR PRO LEU ASP LEU SER ARG LEU ASN GLU LYS ILE SEQRES 22 B 425 TYR ILE GLY SER SER GLU ARG LYS VAL THR LYS ILE ALA SEQRES 23 B 425 LEU GLU LYS CYS ASN LEU ASN LEU ILE PRO LYS GLY SER SEQRES 24 B 425 ILE ILE ILE SER THR ARG ALA PRO VAL GLY TYR VAL ALA SEQRES 25 B 425 VAL LEU THR VAL GLU SER THR PHE ASN GLN GLY CYS LYS SEQRES 26 B 425 GLY LEU PHE GLN LYS ASN ASN ASP SER VAL ASN THR GLU SEQRES 27 B 425 PHE TYR ALA TYR TYR LEU LYS PHE LYS LYS ASN LEU LEU SEQRES 28 B 425 GLU ASN LEU SER GLY GLY SER THR PHE LYS GLU LEU SER SEQRES 29 B 425 LYS SER MET LEU GLU ASN PHE LYS ILE PRO LEU PRO PRO SEQRES 30 B 425 LEU GLU GLU GLN LYS GLN ILE ALA LYS ILE LEU SER SER SEQRES 31 B 425 VAL ASP LYS SER ILE GLU LEU LYS LYS GLN LYS LYS GLU SEQRES 32 B 425 LYS LEU GLN ARG MET LYS LYS LYS ILE MET GLU LEU LEU SEQRES 33 B 425 LEU THR GLY LYS VAL ARG VAL LYS THR FORMUL 3 HOH *329(H2 O) HELIX 1 1 LEU A 25 VAL A 28 1 4 HELIX 2 2 VAL A 42 TYR A 46 5 5 HELIX 3 3 LYS A 55 ASN A 61 1 7 HELIX 4 4 THR A 74 ASN A 80 1 7 HELIX 5 5 GLU A 126 ASN A 137 1 12 HELIX 6 6 ASN A 137 LYS A 143 1 7 HELIX 7 7 ASN A 154 SER A 160 1 7 HELIX 8 8 PRO A 167 GLY A 210 1 44 HELIX 9 9 ILE A 233 ILE A 236 1 4 HELIX 10 10 LYS A 249 TRP A 253 5 5 HELIX 11 11 THR A 262 ARG A 268 1 7 HELIX 12 12 THR A 283 CYS A 290 1 8 HELIX 13 13 ASN A 336 LYS A 347 1 12 HELIX 14 14 LYS A 347 GLY A 356 1 10 HELIX 15 15 SER A 364 PHE A 371 1 8 HELIX 16 16 PRO A 377 LEU A 417 1 41 HELIX 17 17 LEU B 25 VAL B 28 1 4 HELIX 18 18 VAL B 42 TYR B 46 5 5 HELIX 19 19 LYS B 55 SER B 62 1 8 HELIX 20 20 THR B 74 ASN B 80 1 7 HELIX 21 21 GLU B 126 GLN B 147 1 22 HELIX 22 22 ASN B 154 LYS B 159 1 6 HELIX 23 23 PRO B 167 GLY B 210 1 44 HELIX 24 24 ILE B 233 ILE B 236 1 4 HELIX 25 25 LYS B 249 TRP B 253 5 5 HELIX 26 26 THR B 262 SER B 267 1 6 HELIX 27 27 THR B 283 GLU B 288 1 6 HELIX 28 28 ASN B 336 LYS B 347 1 12 HELIX 29 29 LYS B 347 GLY B 356 1 10 HELIX 30 30 SER B 364 ASN B 370 1 7 HELIX 31 31 PRO B 377 LEU B 417 1 41 SHEET 1 A 2 VAL A 23 GLU A 24 0 SHEET 2 A 2 LYS A 162 ILE A 163 -1 O ILE A 163 N VAL A 23 SHEET 1 B 5 CYS A 29 ALA A 34 0 SHEET 2 B 5 ILE A 115 PRO A 120 -1 O ILE A 119 N LYS A 31 SHEET 3 B 5 VAL A 91 ALA A 94 -1 N VAL A 91 O ILE A 118 SHEET 4 B 5 THR A 102 ASN A 105 -1 O ALA A 103 N LEU A 92 SHEET 5 B 5 TYR A 65 LEU A 66 1 N LEU A 66 O ILE A 104 SHEET 1 C 3 ILE A 71 ILE A 73 0 SHEET 2 C 3 ILE A 51 VAL A 54 -1 N ILE A 51 O ILE A 73 SHEET 3 C 3 ALA A 110 THR A 111 1 O ALA A 110 N VAL A 54 SHEET 1 D 2 PHE A 216 LYS A 217 0 SHEET 2 D 2 ILE A 224 PRO A 225 -1 O ILE A 224 N LYS A 217 SHEET 1 E 2 GLU A 229 GLU A 232 0 SHEET 2 E 2 LYS A 372 LEU A 375 -1 O ILE A 373 N PHE A 231 SHEET 1 F 5 PHE A 237 THR A 241 0 SHEET 2 F 5 CYS A 324 GLN A 329 -1 O PHE A 328 N GLU A 238 SHEET 3 F 5 ILE A 300 SER A 303 -1 N ILE A 300 O LEU A 327 SHEET 4 F 5 VAL A 311 LEU A 314 -1 O ALA A 312 N ILE A 301 SHEET 5 F 5 TYR A 274 ILE A 275 1 N ILE A 275 O VAL A 313 SHEET 1 G 3 LYS A 281 VAL A 282 0 SHEET 2 G 3 ILE A 258 ILE A 261 -1 N ILE A 258 O VAL A 282 SHEET 3 G 3 THR A 319 PHE A 320 1 O THR A 319 N ASN A 259 SHEET 1 H 2 TYR B 3 GLU B 5 0 SHEET 2 H 2 VAL B 421 VAL B 423 -1 O ARG B 422 N LYS B 4 SHEET 1 I 2 LYS B 9 LYS B 10 0 SHEET 2 I 2 ILE B 16 PRO B 17 -1 O ILE B 16 N LYS B 10 SHEET 1 J 2 ILE B 22 GLU B 24 0 SHEET 2 J 2 LYS B 162 PRO B 164 -1 O ILE B 163 N VAL B 23 SHEET 1 K 5 CYS B 29 ALA B 34 0 SHEET 2 K 5 ILE B 115 PRO B 120 -1 O GLY B 117 N LYS B 33 SHEET 3 K 5 VAL B 91 ALA B 94 -1 N PHE B 93 O LEU B 116 SHEET 4 K 5 THR B 102 ASN B 105 -1 O ALA B 103 N LEU B 92 SHEET 5 K 5 TYR B 65 LEU B 66 1 N LEU B 66 O ILE B 104 SHEET 1 L 3 ILE B 71 ILE B 73 0 SHEET 2 L 3 ILE B 51 VAL B 54 -1 N ILE B 51 O ILE B 73 SHEET 3 L 3 ALA B 110 THR B 111 1 O ALA B 110 N VAL B 54 SHEET 1 M 2 PHE B 216 SER B 219 0 SHEET 2 M 2 GLY B 222 PRO B 225 -1 O GLY B 222 N SER B 219 SHEET 1 N 2 GLU B 229 GLU B 232 0 SHEET 2 N 2 LYS B 372 LEU B 375 -1 O ILE B 373 N PHE B 231 SHEET 1 O 5 PHE B 237 LYS B 240 0 SHEET 2 O 5 CYS B 324 GLN B 329 -1 O GLY B 326 N LYS B 240 SHEET 3 O 5 ILE B 300 SER B 303 -1 N ILE B 300 O LEU B 327 SHEET 4 O 5 VAL B 311 LEU B 314 -1 O ALA B 312 N ILE B 301 SHEET 5 O 5 TYR B 274 ILE B 275 1 N ILE B 275 O VAL B 313 SHEET 1 P 3 LYS B 281 VAL B 282 0 SHEET 2 P 3 ILE B 258 ILE B 261 -1 N ILE B 258 O VAL B 282 SHEET 3 P 3 THR B 319 PHE B 320 1 O THR B 319 N ASN B 259 CRYST1 71.972 94.222 103.520 90.00 95.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013894 0.000000 0.001218 0.00000 SCALE2 0.000000 0.010613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009697 0.00000 MASTER 355 0 0 31 48 0 0 6 0 0 0 66 END