HEADER SIGNALING PROTEIN 07-DEC-04 1Y6Y TITLE THERETICAL MODEL OF BOVINE RHODOPSIN CARBOXYL TAIL MUTANT TITLE 2 (RESIDUES 329-348) BINDING TO BOVINE ROD ARRESTIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARBOXYL TAIL (RESIDUES 329-348); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: S-ARRESTIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 10-362; COMPND 11 SYNONYM: RETINAL S-ANTIGEN, 48 KDA PROTEIN, S-AG, ROD COMPND 12 PHOTORECEPTOR ARRESTIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 6 ORGANISM_COMMON: BOVINE KEYWDS GPCR, DESENSITIZATION, ARRESTIN EXPDTA THEORETICAL MODEL AUTHOR Y.LING,M.ASCANO,P.ROBINSON,S.K.GREGURICK REVDAT 1 08-MAR-05 1Y6Y 0 JRNL AUTH Y.LING,M.ASCANO,P.ROBINSON,S.K.GREGURICK JRNL TITL EXPERIMENTAL AND COMPUTATIONAL STUDIES OF THE JRNL TITL 2 DESENSITIZATION PROCESS IN THE BOVINE JRNL TITL 3 RHODOPSIN-ARRESTIN COMPLEX. JRNL REF BIOPHYS.J. V. 86 2445 2004 JRNL REFN ASTM BIOJAU US ISSN 0006-3495 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MONTE CARLO SIMULATED ANNEALING REMARK 4 REMARK 4 1Y6Y COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-2004. REMARK 100 THE RCSB ID CODE IS RCSB031193. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CG ASP A 13 NH1 ARG B 42 0.78 REMARK 500 CB LYS A 12 CE1 PHE B 26 0.93 REMARK 500 OD2 ASP A 13 NH1 ARG B 42 1.15 REMARK 500 OD2 ASP A 11 OD1 ASP A 13 1.56 REMARK 500 O GLU A 5 OD2 ASP A 9 1.70 REMARK 500 OD1 ASP A 13 NH1 ARG B 42 1.73 REMARK 500 CB ASP A 13 NH1 ARG B 42 1.75 REMARK 500 O ASP A 4 OD2 ASP A 8 1.76 REMARK 500 CB LYS A 12 CZ PHE B 26 1.85 REMARK 500 CG LYS A 12 CD1 PHE B 26 1.85 REMARK 500 CB LYS A 12 CD1 PHE B 26 1.87 REMARK 500 OD2 ASP A 11 CG ASP A 13 1.89 REMARK 500 CG LYS A 12 CE1 PHE B 26 1.95 REMARK 500 CA LYS A 12 CE1 PHE B 26 1.97 REMARK 500 CG ASP A 13 CZ ARG B 42 2.01 REMARK 500 OD2 ASP A 13 CZ ARG B 42 2.01 REMARK 500 OD1 ASP A 9 CD PRO A 20 2.09 REMARK 500 N NC A 22 CE1 HIS B 314 2.09 REMARK 500 N NC A 22 ND1 HIS B 314 2.14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 3 CG ASP A 3 OD1 -0.099 REMARK 500 ASP A 4 CG ASP A 4 OD1 -0.098 REMARK 500 ALA A 6 C ALA A 6 O 0.081 REMARK 500 LYS A 12 CB LYS A 12 CG -0.130 REMARK 500 ALA A 19 C ALA A 19 O 0.081 REMARK 500 ALA A 19 C PRO A 20 N -0.090 REMARK 500 ALA A 21 C ALA A 21 O 0.080 REMARK 500 PRO A 20 C ALA A 21 N -0.068 REMARK 500 TRP B 207 CZ3 TRP B 207 CH2 -0.084 REMARK 500 MET B 334 SD MET B 334 CE -0.064 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS B 47 N - CA - C ANGL. DEV. =-15.9 DEGREES REMARK 500 VAL B 107 N - CA - C ANGL. DEV. =-11.2 DEGREES REMARK 500 LYS B 189 N - CA - C ANGL. DEV. =-10.5 DEGREES REMARK 500 LEU B 216 N - CA - C ANGL. DEV. =-11.3 DEGREES DBREF 1Y6Y A 2 21 UNP P02699 OPSD_BOVIN 329 348 DBREF 1Y6Y B 23 375 UNP P08168 ARRS_BOVIN 10 362 SEQADV 1Y6Y ACE A 1 UNP P02699 ACETYLATION SEQADV 1Y6Y ASP A 7 UNP P02699 SER 334 ENGINEERED SEQADV 1Y6Y ASP A 8 UNP P02699 THR 335 ENGINEERED SEQADV 1Y6Y ASP A 9 UNP P02699 THR 336 ENGINEERED SEQADV 1Y6Y ASP A 11 UNP P02699 SER 338 ENGINEERED SEQADV 1Y6Y ASP A 13 UNP P02699 THR 340 ENGINEERED SEQADV 1Y6Y ASP A 15 UNP P02699 THR 342 ENGINEERED SEQADV 1Y6Y ASP A 16 UNP P02699 SER 343 ENGINEERED SEQADV 1Y6Y NC A 22 UNP P02699 AMIDATION SEQRES 1 A 22 ACE GLY ASP ASP GLU ALA ASP ASP ASP VAL ASP LYS ASP SEQRES 2 A 22 GLU ASP ASP GLN VAL ALA PRO ALA NC SEQRES 1 B 353 HIS VAL ILE PHE LYS LYS ILE SER ARG ASP LYS SER VAL SEQRES 2 B 353 THR ILE TYR LEU GLY LYS ARG ASP TYR ILE ASP HIS VAL SEQRES 3 B 353 GLU ARG VAL GLU PRO VAL ASP GLY VAL VAL LEU VAL ASP SEQRES 4 B 353 PRO GLU LEU VAL LYS GLY LYS ARG VAL TYR VAL SER LEU SEQRES 5 B 353 THR CYS ALA PHE ARG TYR GLY GLN GLU ASP ILE ASP VAL SEQRES 6 B 353 MET GLY LEU SER PHE ARG ARG ASP LEU TYR PHE SER GLN SEQRES 7 B 353 VAL GLN VAL PHE PRO PRO VAL GLY ALA SER GLY ALA THR SEQRES 8 B 353 THR ARG LEU GLN GLU SER LEU ILE LYS LYS LEU GLY ALA SEQRES 9 B 353 ASN THR TYR PRO PHE LEU LEU THR PHE PRO ASP TYR LEU SEQRES 10 B 353 PRO CYS SER VAL MET LEU GLN PRO ALA PRO GLN ASP VAL SEQRES 11 B 353 GLY LYS SER CYS GLY VAL ASP PHE GLU ILE LYS ALA PHE SEQRES 12 B 353 ALA THR HIS SER THR ASP VAL GLU GLU ASP LYS ILE PRO SEQRES 13 B 353 LYS LYS SER SER VAL ARG LEU LEU ILE ARG LYS VAL GLN SEQRES 14 B 353 HIS ALA PRO ARG ASP MET GLY PRO GLN PRO ARG ALA GLU SEQRES 15 B 353 ALA SER TRP GLN PHE PHE MET SER ASP LYS PRO LEU ARG SEQRES 16 B 353 LEU ALA VAL SER LEU SER LYS GLU ILE TYR TYR HIS GLY SEQRES 17 B 353 GLU PRO ILE PRO VAL THR VAL ALA VAL THR ASN SER THR SEQRES 18 B 353 GLU LYS THR VAL LYS LYS ILE LYS VAL LEU VAL GLU GLN SEQRES 19 B 353 VAL THR ASN VAL VAL LEU TYR SER SER ASP TYR TYR ILE SEQRES 20 B 353 LYS THR VAL ALA ALA GLU GLU ALA GLN GLU LYS VAL PRO SEQRES 21 B 353 PRO ASN SER SER LEU THR LYS THR LEU THR LEU VAL PRO SEQRES 22 B 353 LEU LEU ALA ASN ASN ARG GLU ARG ARG GLY ILE ALA LEU SEQRES 23 B 353 ASP GLY LYS ILE LYS HIS GLU ASP THR ASN LEU ALA SER SEQRES 24 B 353 SER THR ILE ILE LYS GLU GLY ILE ASP LYS THR VAL MET SEQRES 25 B 353 GLY ILE LEU VAL SER TYR GLN ILE LYS VAL LYS LEU THR SEQRES 26 B 353 VAL SER GLY LEU LEU GLY GLU LEU THR SER SER GLU VAL SEQRES 27 B 353 ALA THR GLU VAL PRO PHE ARG LEU MET HIS PRO GLN PRO SEQRES 28 B 353 GLU ASP HET ACE A 1 3 HET NC A 22 3 HETNAM ACE ACETYL GROUP HETNAM NC METHYLAMINE GROUP FORMUL 1 ACE C2 H4 O FORMUL 1 NC C H5 N HELIX 1 1 GLY A 2 ASP A 9 1 8 HELIX 2 2 THR B 114 GLY B 125 1 12 HELIX 3 3 HIS B 168 GLU B 174 1 7 HELIX 4 4 LEU B 296 ASN B 300 5 5 HELIX 5 5 ASP B 330 MET B 334 5 5 SHEET 1 A 4 PHE B 26 ILE B 29 0 SHEET 2 A 4 VAL B 35 LEU B 39 -1 O LEU B 39 N PHE B 26 SHEET 3 A 4 VAL B 54 VAL B 60 -1 O LEU B 59 N THR B 36 SHEET 4 A 4 THR B 128 LEU B 133 -1 O LEU B 133 N VAL B 54 SHEET 1 B 6 ARG B 50 VAL B 51 0 SHEET 2 B 6 ASP B 43 HIS B 47 -1 N HIS B 47 O ARG B 50 SHEET 3 B 6 SER B 182 GLN B 191 1 O ARG B 188 N TYR B 44 SHEET 4 B 6 CYS B 156 THR B 167 -1 N ALA B 164 O VAL B 183 SHEET 5 B 6 ARG B 69 TYR B 80 -1 N ARG B 69 O THR B 167 SHEET 6 B 6 PHE B 92 PHE B 104 -1 O SER B 99 N LEU B 74 SHEET 1 C 5 ARG B 50 VAL B 51 0 SHEET 2 C 5 ASP B 43 HIS B 47 -1 N HIS B 47 O ARG B 50 SHEET 3 C 5 SER B 182 GLN B 191 1 O ARG B 188 N TYR B 44 SHEET 4 C 5 CYS B 156 THR B 167 -1 N ALA B 164 O VAL B 183 SHEET 5 C 5 VAL B 143 LEU B 145 -1 N LEU B 145 O CYS B 156 SHEET 1 D 4 GLU B 204 MET B 211 0 SHEET 2 D 4 LYS B 214 SER B 221 -1 O LEU B 218 N TRP B 207 SHEET 3 D 4 ILE B 233 ASN B 241 -1 O ALA B 238 N ALA B 219 SHEET 4 D 4 SER B 285 LEU B 293 -1 O LEU B 293 N ILE B 233 SHEET 1 E 5 ILE B 226 TYR B 228 0 SHEET 2 E 5 SER B 358 MET B 369 1 O ARG B 367 N TYR B 227 SHEET 3 E 5 ILE B 336 VAL B 348 -1 N ILE B 342 O VAL B 364 SHEET 4 E 5 VAL B 247 VAL B 260 -1 N GLU B 255 O GLN B 341 SHEET 5 E 5 TYR B 267 GLU B 276 -1 O TYR B 268 N THR B 258 CISPEP 1 PHE B 104 PRO B 105 0 -0.56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 94 0 2 5 24 0 0 6 0 0 0 30 END