HEADER SIGNALING PROTEIN 23-NOV-04 1Y36 TITLE HOMOLOGY MODEL OF THE HUMAN P2Y1 RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: P2Y PURINOCEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP RECEPTOR, P2Y1, PURINERGIC RECEPTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS P2Y, G-PROTEIN COUPLED RECEPTOR, TRANSMEMBRANE, NUCLEOTIDE KEYWDS 2 RECEPTOR EXPDTA THEORETICAL MODEL AUTHOR S.COSTANZI REVDAT 1 07-DEC-04 1Y36 0 JRNL AUTH S.COSTANZI,L.MAMEDOVA,Z.-G.GAO,K.A.JACOBSON JRNL TITL ARCHITECTURE OF P2Y NUCLEOTIDE RECEPTORS: JRNL TITL 2 STRUCTURAL COMPARISON BASED ON SEQUENCE ANALYSIS, JRNL TITL 3 MUTAGENESIS AND HOMOLOGY MODELING JRNL REF J.MED.CHEM. V. 47 5393 2004 JRNL REFN ASTM JMCMAR US ISSN 0022-2623 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y36 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-2004. REMARK 100 THE RCSB ID CODE IS RCSB031057. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 TRP A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 PRO A 10 REMARK 465 ASN A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 ASP A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 PHE A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 TRP A 25 REMARK 465 GLY A 26 REMARK 465 ASN A 27 REMARK 465 SER A 28 REMARK 465 THR A 29 REMARK 465 VAL A 30 REMARK 465 ALA A 31 REMARK 465 SER A 32 REMARK 465 THR A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 VAL A 36 REMARK 465 SER A 37 REMARK 465 SER A 38 REMARK 465 ALA A 342 REMARK 465 SER A 343 REMARK 465 ARG A 344 REMARK 465 ARG A 345 REMARK 465 SER A 346 REMARK 465 GLU A 347 REMARK 465 ALA A 348 REMARK 465 ASN A 349 REMARK 465 LEU A 350 REMARK 465 GLN A 351 REMARK 465 SER A 352 REMARK 465 LYS A 353 REMARK 465 SER A 354 REMARK 465 GLU A 355 REMARK 465 ASP A 356 REMARK 465 MET A 357 REMARK 465 THR A 358 REMARK 465 LEU A 359 REMARK 465 ASN A 360 REMARK 465 ILE A 361 REMARK 465 LEU A 362 REMARK 465 PRO A 363 REMARK 465 GLU A 364 REMARK 465 PHE A 365 REMARK 465 LYS A 366 REMARK 465 GLN A 367 REMARK 465 ASN A 368 REMARK 465 GLY A 369 REMARK 465 ASP A 370 REMARK 465 THR A 371 REMARK 465 SER A 372 REMARK 465 LEU A 373 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 112 CA - CB - CG ANGL. DEV. =-14.8 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 167 -30.64 76.97 REMARK 500 LEU A 244 137.24 100.60 REMARK 500 ASP A 250 163.11 84.39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 42 ALA A 43 149.02 REMARK 500 TYR A 52 TYR A 53 146.73 DBREF 1Y36 A 1 373 UNP P47900 P2YR_HUMAN 1 373 SEQRES 1 A 373 MET THR GLU VAL LEU TRP PRO ALA VAL PRO ASN GLY THR SEQRES 2 A 373 ASP ALA ALA PHE LEU ALA GLY PRO GLY SER SER TRP GLY SEQRES 3 A 373 ASN SER THR VAL ALA SER THR ALA ALA VAL SER SER SER SEQRES 4 A 373 PHE LYS CYS ALA LEU THR LYS THR GLY PHE GLN PHE TYR SEQRES 5 A 373 TYR LEU PRO ALA VAL TYR ILE LEU VAL PHE ILE ILE GLY SEQRES 6 A 373 PHE LEU GLY ASN SER VAL ALA ILE TRP MET PHE VAL PHE SEQRES 7 A 373 HIS MET LYS PRO TRP SER GLY ILE SER VAL TYR MET PHE SEQRES 8 A 373 ASN LEU ALA LEU ALA ASP PHE LEU TYR VAL LEU THR LEU SEQRES 9 A 373 PRO ALA LEU ILE PHE TYR TYR PHE ASN LYS THR ASP TRP SEQRES 10 A 373 ILE PHE GLY ASP ALA MET CYS LYS LEU GLN ARG PHE ILE SEQRES 11 A 373 PHE HIS VAL ASN LEU TYR GLY SER ILE LEU PHE LEU THR SEQRES 12 A 373 CYS ILE SER ALA HIS ARG TYR SER GLY VAL VAL TYR PRO SEQRES 13 A 373 LEU LYS SER LEU GLY ARG LEU LYS LYS LYS ASN ALA ILE SEQRES 14 A 373 CYS ILE SER VAL LEU VAL TRP LEU ILE VAL VAL VAL ALA SEQRES 15 A 373 ILE SER PRO ILE LEU PHE TYR SER GLY THR GLY VAL ARG SEQRES 16 A 373 LYS ASN LYS THR ILE THR CYS TYR ASP THR THR SER ASP SEQRES 17 A 373 GLU TYR LEU ARG SER TYR PHE ILE TYR SER MET CYS THR SEQRES 18 A 373 THR VAL ALA MET PHE CYS VAL PRO LEU VAL LEU ILE LEU SEQRES 19 A 373 GLY CYS TYR GLY LEU ILE VAL ARG ALA LEU ILE TYR LYS SEQRES 20 A 373 ASP LEU ASP ASN SER PRO LEU ARG ARG LYS SER ILE TYR SEQRES 21 A 373 LEU VAL ILE ILE VAL LEU THR VAL PHE ALA VAL SER TYR SEQRES 22 A 373 ILE PRO PHE HIS VAL MET LYS THR MET ASN LEU ARG ALA SEQRES 23 A 373 ARG LEU ASP PHE GLN THR PRO ALA MET CYS ALA PHE ASN SEQRES 24 A 373 ASP ARG VAL TYR ALA THR TYR GLN VAL THR ARG GLY LEU SEQRES 25 A 373 ALA SER LEU ASN SER CYS VAL ASP PRO ILE LEU TYR PHE SEQRES 26 A 373 LEU ALA GLY ASP THR PHE ARG ARG ARG LEU SER ARG ALA SEQRES 27 A 373 THR ARG LYS ALA SER ARG ARG SER GLU ALA ASN LEU GLN SEQRES 28 A 373 SER LYS SER GLU ASP MET THR LEU ASN ILE LEU PRO GLU SEQRES 29 A 373 PHE LYS GLN ASN GLY ASP THR SER LEU HELIX 1 1 TYR A 52 HIS A 79 1 28 HELIX 2 2 SER A 84 LYS A 114 1 31 HELIX 3 3 PHE A 119 VAL A 154 1 36 HELIX 4 4 ASN A 167 SER A 184 1 18 HELIX 5 5 SER A 184 TYR A 189 1 6 HELIX 6 6 SER A 213 PHE A 226 1 14 HELIX 7 7 PHE A 226 ILE A 240 1 15 HELIX 8 8 ARG A 255 ALA A 286 1 32 HELIX 9 9 VAL A 302 SER A 314 1 13 HELIX 10 10 LEU A 315 GLY A 328 1 14 HELIX 11 11 GLY A 328 ARG A 340 1 13 SHEET 1 A 2 GLY A 193 ARG A 195 0 SHEET 2 A 2 CYS A 202 ASP A 204 -1 O TYR A 203 N VAL A 194 SSBOND 1 CYS A 42 CYS A 296 SSBOND 2 CYS A 124 CYS A 202 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 143 0 0 11 2 0 0 6 0 0 0 29 END