HEADER HYDROLASE 12-NOV-04 1XZQ TITLE STRUCTURE OF THE GTP-BINDING PROTEIN TRME FROM THERMOTOGA TITLE 2 MARITIMA COMPLEXED WITH 5-FORMYL-THF COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRNA MODIFICATION GTPASE TRME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRME GTP-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROBABLE TRNA MODIFICATION GTPASE TRME; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-117); COMPND 10 SYNONYM: TRME GTP-BINDING PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TRME; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3 (TRME-); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET20B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 12 ORGANISM_TAXID: 2336; SOURCE 13 GENE: TRME; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21DE3 (TRME-); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET20B KEYWDS GTP-BINDING, THF-BINDING, TRNA-MODIFICATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SCRIMA,I.R.VETTER,M.E.ARMENGOD,A.WITTINGHOFER REVDAT 3 24-FEB-09 1XZQ 1 VERSN REVDAT 2 26-APR-05 1XZQ 1 JRNL REVDAT 1 04-JAN-05 1XZQ 0 JRNL AUTH A.SCRIMA,I.R.VETTER,M.E.ARMENGOD,A.WITTINGHOFER JRNL TITL THE STRUCTURE OF THE TRME GTP-BINDING PROTEIN AND JRNL TITL 2 ITS IMPLICATIONS FOR TRNA MODIFICATION JRNL REF EMBO J. V. 24 23 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 15616586 JRNL DOI 10.1038/SJ.EMBOJ.7600507 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2391 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4408 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.69000 REMARK 3 B22 (A**2) : -17.69000 REMARK 3 B33 (A**2) : 35.38000 REMARK 3 B12 (A**2) : -0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.63 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.62 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XZQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-04. REMARK 100 THE RCSB ID CODE IS RCSB030933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24138 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, MES, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.89333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.94667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.89333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.94667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER (OBTAINED BY REMARK 300 SUPERIMPOSITION OF THE FULL-LENGTH MOLECULE (A) AND THE N- REMARK 300 TERMINAL DOMAIN (B)). DIMERISATION VIA THE N-TERMINAL DOMAIN IS REMARK 300 ESSENTIAL FOR THE FORMATION OF THE THF-BINDING SITE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 195.04500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 112.60928 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -31 REMARK 465 GLY A -30 REMARK 465 SER A -29 REMARK 465 SER A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 SER A -21 REMARK 465 SER A -20 REMARK 465 GLY A -19 REMARK 465 LEU A -18 REMARK 465 VAL A -17 REMARK 465 PRO A -16 REMARK 465 ARG A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 TRP A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 PRO A -8 REMARK 465 ASN A -7 REMARK 465 SER A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 VAL A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 MET B -31 REMARK 465 GLY B -30 REMARK 465 SER B -29 REMARK 465 SER B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 SER B -21 REMARK 465 SER B -20 REMARK 465 GLY B -19 REMARK 465 LEU B -18 REMARK 465 VAL B -17 REMARK 465 PRO B -16 REMARK 465 ARG B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 TRP B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 PRO B -8 REMARK 465 ASN B -7 REMARK 465 SER B -6 REMARK 465 SER B -5 REMARK 465 SER B -4 REMARK 465 VAL B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 LEU B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 242 CG1 CG2 CD1 REMARK 470 PRO A 243 CG CD REMARK 470 THR A 245 OG1 CG2 REMARK 470 THR A 246 OG1 CG2 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 248 CG OD1 OD2 REMARK 470 VAL A 249 CG1 CG2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 THR A 273 OG1 CG2 REMARK 470 ASN A 274 CG OD1 ND2 REMARK 470 ASP A 275 CG OD1 OD2 REMARK 470 LEU A 276 CG CD1 CD2 REMARK 470 VAL A 277 CG1 CG2 REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 280 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 243 N - CA - CB ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 21.69 -78.93 REMARK 500 ILE A 40 95.21 -52.20 REMARK 500 GLU A 52 -62.65 -99.89 REMARK 500 ASN A 53 -42.21 -138.29 REMARK 500 ASP A 58 130.20 178.58 REMARK 500 SER A 67 -52.29 -7.98 REMARK 500 PRO A 68 -72.80 -64.97 REMARK 500 SER A 70 -176.84 -173.55 REMARK 500 GLU A 74 -165.26 -118.42 REMARK 500 VAL A 77 111.96 -160.82 REMARK 500 CYS A 81 -165.87 -102.22 REMARK 500 PRO A 85 -11.89 -46.93 REMARK 500 ALA A 100 173.26 -56.55 REMARK 500 ASP A 119 -165.82 -71.61 REMARK 500 GLU A 176 -87.60 -95.92 REMARK 500 THR A 181 -31.58 -38.88 REMARK 500 PRO A 243 101.00 -174.82 REMARK 500 ARG A 247 81.49 59.81 REMARK 500 SER A 251 -71.62 -62.12 REMARK 500 VAL A 269 83.97 -65.55 REMARK 500 THR A 273 67.17 63.16 REMARK 500 ASN A 274 105.80 -55.75 REMARK 500 LYS A 333 63.61 -106.28 REMARK 500 THR A 345 -171.55 -172.75 REMARK 500 GLU A 408 17.20 -67.66 REMARK 500 MET A 410 159.49 -41.28 REMARK 500 PHE A 446 -128.81 -97.50 REMARK 500 ASP B 2 155.68 -49.25 REMARK 500 ALA B 45 33.23 -83.18 REMARK 500 ILE B 46 136.22 -31.03 REMARK 500 GLU B 52 75.46 -114.56 REMARK 500 ASN B 53 84.44 49.14 REMARK 500 SER B 67 -47.00 -22.39 REMARK 500 SER B 70 -170.31 -174.06 REMARK 500 GLU B 74 -167.23 -110.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FON A 451 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FON B 118 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XZP RELATED DB: PDB REMARK 900 THE GTP-BINDING PROTEIN TRME DBREF 1XZQ A 1 450 UNP Q9WYA4 TRME_THEMA 1 450 DBREF 1XZQ B 1 117 UNP Q9WYA4 TRME_THEMA 1 117 SEQADV 1XZQ MET A -31 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY A -30 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -29 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -28 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -27 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -26 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -25 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -24 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -23 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -22 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -21 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -20 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY A -19 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LEU A -18 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ VAL A -17 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ PRO A -16 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ARG A -15 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY A -14 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -13 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -12 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ TRP A -11 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY A -10 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -9 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ PRO A -8 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ASN A -7 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -6 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -5 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -4 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ VAL A -3 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ASP A -2 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LYS A -1 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LEU A 0 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ MET B -31 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY B -30 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -29 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -28 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -27 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -26 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -25 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -24 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -23 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -22 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -21 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -20 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY B -19 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LEU B -18 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ VAL B -17 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ PRO B -16 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ARG B -15 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY B -14 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -13 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -12 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ TRP B -11 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY B -10 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -9 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ PRO B -8 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ASN B -7 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -6 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -5 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -4 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ VAL B -3 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ASP B -2 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LYS B -1 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LEU B 0 UNP Q9WYA4 EXPRESSION TAG SEQRES 1 A 482 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 482 LEU VAL PRO ARG GLY SER HIS TRP GLY SER PRO ASN SER SEQRES 3 A 482 SER SER VAL ASP LYS LEU MET ASP THR ILE VAL ALA VAL SEQRES 4 A 482 ALA THR PRO PRO GLY LYS GLY ALA ILE ALA ILE LEU ARG SEQRES 5 A 482 LEU SER GLY PRO ASP SER TRP LYS ILE VAL GLN LYS HIS SEQRES 6 A 482 LEU ARG THR ARG SER LYS ILE VAL PRO ARG LYS ALA ILE SEQRES 7 A 482 HIS GLY TRP ILE HIS GLU ASN GLY GLU ASP VAL ASP GLU SEQRES 8 A 482 VAL VAL VAL VAL PHE TYR LYS SER PRO LYS SER TYR THR SEQRES 9 A 482 GLY GLU ASP MET VAL GLU VAL MET CYS HIS GLY GLY PRO SEQRES 10 A 482 LEU VAL VAL LYS LYS LEU LEU ASP LEU PHE LEU LYS SER SEQRES 11 A 482 GLY ALA ARG MET ALA GLU PRO GLY GLU PHE THR LYS ARG SEQRES 12 A 482 ALA PHE LEU ASN GLY LYS MET ASP LEU THR SER ALA GLU SEQRES 13 A 482 ALA VAL ARG ASP LEU ILE GLU ALA LYS SER GLU THR SER SEQRES 14 A 482 LEU LYS LEU SER LEU ARG ASN LEU LYS GLY GLY LEU ARG SEQRES 15 A 482 ASP PHE VAL ASP SER LEU ARG ARG GLU LEU ILE GLU VAL SEQRES 16 A 482 LEU ALA GLU ILE ARG VAL GLU LEU ASP TYR PRO ASP GLU SEQRES 17 A 482 ILE GLU THR ASN THR GLY GLU VAL VAL THR ARG LEU GLU SEQRES 18 A 482 ARG ILE LYS GLU LYS LEU THR GLU GLU LEU LYS LYS ALA SEQRES 19 A 482 ASP ALA GLY ILE LEU LEU ASN ARG GLY LEU ARG MET VAL SEQRES 20 A 482 ILE VAL GLY LYS PRO ASN VAL GLY LYS SER THR LEU LEU SEQRES 21 A 482 ASN ARG LEU LEU ASN GLU ASP ARG ALA ILE VAL THR ASP SEQRES 22 A 482 ILE PRO GLY THR THR ARG ASP VAL ILE SER GLU GLU ILE SEQRES 23 A 482 VAL ILE ARG GLY ILE LEU PHE ARG ILE VAL ASP THR ALA SEQRES 24 A 482 GLY VAL ARG SER GLU THR ASN ASP LEU VAL GLU ARG LEU SEQRES 25 A 482 GLY ILE GLU ARG THR LEU GLN GLU ILE GLU LYS ALA ASP SEQRES 26 A 482 ILE VAL LEU PHE VAL LEU ASP ALA SER SER PRO LEU ASP SEQRES 27 A 482 GLU GLU ASP ARG LYS ILE LEU GLU ARG ILE LYS ASN LYS SEQRES 28 A 482 ARG TYR LEU VAL VAL ILE ASN LYS VAL ASP VAL VAL GLU SEQRES 29 A 482 LYS ILE ASN GLU GLU GLU ILE LYS ASN LYS LEU GLY THR SEQRES 30 A 482 ASP ARG HIS MET VAL LYS ILE SER ALA LEU LYS GLY GLU SEQRES 31 A 482 GLY LEU GLU LYS LEU GLU GLU SER ILE TYR ARG GLU THR SEQRES 32 A 482 GLN GLU ILE PHE GLU ARG GLY SER ASP SER LEU ILE THR SEQRES 33 A 482 ASN LEU ARG GLN LYS GLN LEU LEU GLU ASN VAL LYS GLY SEQRES 34 A 482 HIS LEU GLU ASP ALA ILE LYS SER LEU LYS GLU GLY MET SEQRES 35 A 482 PRO VAL ASP MET ALA SER ILE ASP LEU GLU ARG ALA LEU SEQRES 36 A 482 ASN LEU LEU ASP GLU VAL THR GLY ARG SER PHE ARG GLU SEQRES 37 A 482 ASP LEU LEU ASP THR ILE PHE SER ASN PHE CYS VAL GLY SEQRES 38 A 482 LYS SEQRES 1 B 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 149 LEU VAL PRO ARG GLY SER HIS TRP GLY SER PRO ASN SER SEQRES 3 B 149 SER SER VAL ASP LYS LEU MET ASP THR ILE VAL ALA VAL SEQRES 4 B 149 ALA THR PRO PRO GLY LYS GLY ALA ILE ALA ILE LEU ARG SEQRES 5 B 149 LEU SER GLY PRO ASP SER TRP LYS ILE VAL GLN LYS HIS SEQRES 6 B 149 LEU ARG THR ARG SER LYS ILE VAL PRO ARG LYS ALA ILE SEQRES 7 B 149 HIS GLY TRP ILE HIS GLU ASN GLY GLU ASP VAL ASP GLU SEQRES 8 B 149 VAL VAL VAL VAL PHE TYR LYS SER PRO LYS SER TYR THR SEQRES 9 B 149 GLY GLU ASP MET VAL GLU VAL MET CYS HIS GLY GLY PRO SEQRES 10 B 149 LEU VAL VAL LYS LYS LEU LEU ASP LEU PHE LEU LYS SER SEQRES 11 B 149 GLY ALA ARG MET ALA GLU PRO GLY GLU PHE THR LYS ARG SEQRES 12 B 149 ALA PHE LEU ASN GLY LYS HET FON A 451 34 HET FON B 118 34 HETNAM FON FOLINIC ACID HETSYN FON 5-FORMYL-5,6,7,8-TETRAHYDROFOLATE FORMUL 3 FON 2(C20 H23 N7 O7) HELIX 1 1 ASP A 25 LYS A 32 1 8 HELIX 2 2 GLY A 84 LYS A 97 1 14 HELIX 3 3 GLY A 106 ASN A 115 1 10 HELIX 4 4 ASP A 119 ALA A 132 1 14 HELIX 5 5 SER A 134 LYS A 146 1 13 HELIX 6 6 GLY A 147 TYR A 173 1 27 HELIX 7 7 ASN A 180 LYS A 200 1 21 HELIX 8 8 ALA A 202 GLY A 211 1 10 HELIX 9 9 VAL A 222 LYS A 224 5 3 HELIX 10 10 SER A 225 ASP A 235 1 11 HELIX 11 11 GLY A 281 ILE A 289 1 9 HELIX 12 12 ASP A 306 LYS A 317 1 12 HELIX 13 13 ASN A 335 LEU A 343 1 9 HELIX 14 14 GLY A 359 GLU A 370 1 12 HELIX 15 15 GLN A 372 SER A 379 1 8 HELIX 16 16 ASN A 385 GLU A 408 1 24 HELIX 17 17 PRO A 411 THR A 430 1 20 HELIX 18 18 ARG A 435 SER A 444 1 10 HELIX 19 19 ASP B 25 LYS B 32 1 8 HELIX 20 20 GLY B 84 LYS B 97 1 14 HELIX 21 21 GLY B 106 ASN B 115 1 10 SHEET 1 A 5 GLU A 59 TYR A 65 0 SHEET 2 A 5 MET A 76 CYS A 81 -1 O MET A 76 N TYR A 65 SHEET 3 A 5 ALA A 17 SER A 22 -1 N LEU A 19 O VAL A 79 SHEET 4 A 5 ILE A 4 VAL A 7 -1 N ALA A 6 O ARG A 20 SHEET 1 B 6 GLU A 252 ILE A 256 0 SHEET 2 B 6 ILE A 259 ASP A 265 -1 O ILE A 263 N GLU A 252 SHEET 3 B 6 LEU A 212 VAL A 217 1 N MET A 214 O ARG A 262 SHEET 4 B 6 ILE A 294 ASP A 300 1 O LEU A 296 N VAL A 217 SHEET 5 B 6 TYR A 321 LYS A 327 1 O VAL A 324 N LEU A 299 SHEET 6 B 6 MET A 349 SER A 353 1 O VAL A 350 N ILE A 325 SHEET 1 C 5 ILE B 46 ILE B 50 0 SHEET 2 C 5 VAL B 57 TYR B 65 -1 O VAL B 57 N ILE B 50 SHEET 3 C 5 MET B 76 HIS B 82 -1 O MET B 80 N VAL B 61 SHEET 4 C 5 ILE B 16 SER B 22 -1 N LEU B 19 O VAL B 79 SHEET 5 C 5 ILE B 4 VAL B 7 -1 N ILE B 4 O SER B 22 SITE 1 AC1 12 ARG A 20 LYS A 69 SER A 70 TYR A 71 SITE 2 AC1 12 GLU A 78 LYS A 117 LYS A 450 ILE B 16 SITE 3 AC1 12 HIS B 47 GLU B 59 VAL B 61 MET B 80 SITE 1 AC2 13 ILE A 16 HIS A 47 GLU A 59 VAL A 61 SITE 2 AC2 13 MET A 80 HIS A 82 ARG B 20 ARG B 43 SITE 3 AC2 13 PRO B 68 LYS B 69 SER B 70 TYR B 71 SITE 4 AC2 13 GLU B 78 CRYST1 130.030 130.030 113.840 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007691 0.004440 0.000000 0.00000 SCALE2 0.000000 0.008880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008784 0.00000 MASTER 417 0 2 21 15 0 7 6 0 0 0 50 END