HEADER DNA BINDING PROTEIN 27-FEB-99 1XNA TITLE NMR SOLUTION STRUCTURE OF THE SINGLE-STRAND BREAK REPAIR TITLE 2 PROTEIN XRCC1-N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (DNA-REPAIR PROTEIN XRCC1); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-183. RESIDUES 152- COMPND 5 183 ARE DISORDERED AND NOT SHOWN.; COMPND 6 SYNONYM: XRCC1-NTD; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: NUCLEUS; SOURCE 6 GENE: XRCC1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21[DE3]PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS XRCC1, 3D NMR, DNA REPAIR, SINGLE-STRAND BREAK DNA BINDING, KEYWDS 2 DNA POLYMERASE-BETA BINDING, BETA SANDWICH, DNA BINDING KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR AUTHOR A.MARINTCHEV,G.P.MULLEN REVDAT 3 24-FEB-09 1XNA 1 VERSN REVDAT 2 01-APR-03 1XNA 1 JRNL REVDAT 1 01-SEP-99 1XNA 0 JRNL AUTH A.MARINTCHEV,M.A.MULLEN,M.W.MACIEJEWSKI,B.PAN, JRNL AUTH 2 M.R.GRYK,G.P.MULLEN JRNL TITL SOLUTION STRUCTURE OF THE SINGLE-STRAND BREAK JRNL TITL 2 REPAIR PROTEIN XRCC1 N-TERMINAL DOMAIN. JRNL REF NAT.STRUCT.BIOL. V. 6 884 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10467102 JRNL DOI 10.1038/12347 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JOURNAL CITATION ABOVE. REMARK 4 REMARK 4 1XNA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-99. REMARK 100 THE RCSB ID CODE IS RCSB000558. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.4 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : H2O AND D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB, CBCA(CO)NH, HN(CO) REMARK 210 CA, 15N-EDITED TOCSY, HCC(CO) REMARK 210 NH, HCCH TOCSY, HNCO, HNHA, REMARK 210 HNHB, 2D (HB)CB(CGCD)HD, 1H- REMARK 210 15N-HSQC, 1H-13C-HSQC, 1H- REMARK 210 TOCSY, AROMATIC 1H-13C-HSQC, REMARK 210 HMQC-J, 3D 15N-NOESY, 3D 13C- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED AVERAGE STRUCTURE REMARK 210 OF 23 CONFORMERS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-AND DOUBLE- REMARK 210 RESONANCE NMR SPECTROSCOPY ON 13C-, 15N-LABELED XRCC1-N- REMARK 210 TERMINAL DOMAIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 PRO A 152 REMARK 465 PRO A 153 REMARK 465 ASP A 154 REMARK 465 LYS A 155 REMARK 465 ASP A 156 REMARK 465 GLU A 157 REMARK 465 ALA A 158 REMARK 465 GLU A 159 REMARK 465 ALA A 160 REMARK 465 PRO A 161 REMARK 465 SER A 162 REMARK 465 GLN A 163 REMARK 465 LYS A 164 REMARK 465 VAL A 165 REMARK 465 THR A 166 REMARK 465 VAL A 167 REMARK 465 THR A 168 REMARK 465 LYS A 169 REMARK 465 LEU A 170 REMARK 465 GLY A 171 REMARK 465 GLN A 172 REMARK 465 PHE A 173 REMARK 465 ARG A 174 REMARK 465 VAL A 175 REMARK 465 LYS A 176 REMARK 465 GLU A 177 REMARK 465 GLU A 178 REMARK 465 GLU A 179 REMARK 465 GLU A 180 REMARK 465 SER A 181 REMARK 465 ALA A 182 REMARK 465 ASN A 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 90.04 153.86 REMARK 500 LYS A 26 65.33 -114.99 REMARK 500 THR A 29 -87.95 -155.53 REMARK 500 TYR A 30 35.06 -178.04 REMARK 500 LYS A 32 -164.08 -127.33 REMARK 500 GLU A 40 88.26 -52.12 REMARK 500 GLU A 50 -9.96 -51.35 REMARK 500 ASP A 63 77.29 -113.31 REMARK 500 ALA A 66 -51.61 -139.29 REMARK 500 ASP A 83 34.16 -97.05 REMARK 500 VAL A 86 89.37 -58.65 REMARK 500 VAL A 89 179.10 -53.03 REMARK 500 SER A 97 -51.73 -120.18 REMARK 500 ARG A 100 -82.28 -82.36 REMARK 500 SER A 101 38.83 -161.66 REMARK 500 SER A 103 -154.17 -150.98 REMARK 500 ASN A 104 109.48 -54.27 REMARK 500 GLN A 134 128.33 149.70 REMARK 500 LYS A 138 -40.47 -170.66 REMARK 500 PHE A 142 -165.90 -167.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 1XNA A 1 183 UNP P18887 XRCC1_HUMAN 1 183 SEQADV 1XNA GLU A 179 UNP P18887 ASP 179 CLONING ARTIFACT SEQRES 1 A 183 MET PRO GLU ILE ARG LEU ARG HIS VAL VAL SER CYS SER SEQRES 2 A 183 SER GLN ASP SER THR HIS CYS ALA GLU ASN LEU LEU LYS SEQRES 3 A 183 ALA ASP THR TYR ARG LYS TRP ARG ALA ALA LYS ALA GLY SEQRES 4 A 183 GLU LYS THR ILE SER VAL VAL LEU GLN LEU GLU LYS GLU SEQRES 5 A 183 GLU GLN ILE HIS SER VAL ASP ILE GLY ASN ASP GLY SER SEQRES 6 A 183 ALA PHE VAL GLU VAL LEU VAL GLY SER SER ALA GLY GLY SEQRES 7 A 183 ALA GLY GLU GLN ASP TYR GLU VAL LEU LEU VAL THR SER SEQRES 8 A 183 SER PHE MET SER PRO SER GLU SER ARG SER GLY SER ASN SEQRES 9 A 183 PRO ASN ARG VAL ARG MET PHE GLY PRO ASP LYS LEU VAL SEQRES 10 A 183 ARG ALA ALA ALA GLU LYS ARG TRP ASP ARG VAL LYS ILE SEQRES 11 A 183 VAL CYS SER GLN PRO TYR SER LYS ASP SER PRO PHE GLY SEQRES 12 A 183 LEU SER PHE VAL ARG PHE HIS SER PRO PRO ASP LYS ASP SEQRES 13 A 183 GLU ALA GLU ALA PRO SER GLN LYS VAL THR VAL THR LYS SEQRES 14 A 183 LEU GLY GLN PHE ARG VAL LYS GLU GLU GLU GLU SER ALA SEQRES 15 A 183 ASN HELIX 1 1 ALA A 21 LEU A 25 5 5 HELIX 2 2 PRO A 96 ARG A 100 1 5 HELIX 3 3 ARG A 118 GLU A 122 1 5 SHEET 1 1 5 HIS A 8 SER A 13 0 SHEET 2 1 5 THR A 42 LEU A 49 -1 N VAL A 46 O SER A 11 SHEET 3 1 5 ARG A 127 SER A 133 -1 N CYS A 132 O ILE A 43 SHEET 4 1 5 PHE A 67 SER A 74 -1 N GLY A 73 O ARG A 127 SHEET 5 1 5 TYR A 84 SER A 92 -1 N LEU A 88 O VAL A 72 SHEET 1 2 3 ARG A 107 GLY A 112 0 SHEET 2 2 3 SER A 57 ASN A 62 -1 N ASN A 62 O ARG A 107 SHEET 3 2 3 PHE A 146 HIS A 150 -1 N HIS A 150 O SER A 57 SHEET 1 3 2 TRP A 33 ALA A 35 0 SHEET 2 3 2 PHE A 142 LEU A 144 -1 N LEU A 144 O TRP A 33 SHEET 1 4 2 GLU A 52 ILE A 55 0 SHEET 2 4 2 ARG A 124 TRP A 125 -1 N TRP A 125 O GLU A 53 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 131 0 0 3 12 0 0 6 0 0 0 15 END