HEADER ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)25-MAR-91 1XIS TITLE A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE ISOMERASE BASED ON TITLE 2 THE 1.6 ANGSTROMS STREPTOMYCES RUBIGINOSUS STRUCTURES WITH XYLITOL TITLE 3 AND D-XYLOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 1929 KEYWDS ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE) EXPDTA X-RAY DIFFRACTION AUTHOR M.WHITLOW,A.J.HOWARD REVDAT 4 13-JUL-11 1XIS 1 VERSN REVDAT 3 24-FEB-09 1XIS 1 VERSN REVDAT 2 01-APR-03 1XIS 1 JRNL REVDAT 1 15-JUL-92 1XIS 0 JRNL AUTH M.WHITLOW,A.J.HOWARD,B.C.FINZEL,T.L.POULOS,E.WINBORNE, JRNL AUTH 2 G.L.GILLILAND JRNL TITL A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE JRNL TITL 2 ISOMERASE BASED ON THE 1.6 A STREPTOMYCES RUBIGINOSUS JRNL TITL 3 STRUCTURES WITH XYLITOL AND D-XYLOSE. JRNL REF PROTEINS V. 9 153 1991 JRNL REFN ISSN 0887-3585 JRNL PMID 2006134 JRNL DOI 10.1002/PROT.340090302 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 55557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3033 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.022 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.032 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.32000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.98500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.98500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.32000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.98500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.98500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.32000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.98500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.98500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.32000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.98500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.98500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 31630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -165.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 99.97000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 103.97000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 99.97000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 103.97000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 LYS A 73 CE NZ REMARK 470 GLY A 388 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 132 CG GLU A 132 CD -0.112 REMARK 500 GLU A 132 CD GLU A 132 OE2 0.072 REMARK 500 GLU A 217 CD GLU A 217 OE1 -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 23 CG - CD - NE ANGL. DEV. = 19.0 DEGREES REMARK 500 ARG A 23 CD - NE - CZ ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 74 CD - NE - CZ ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 PHE A 104 CB - CG - CD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 124 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 124 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 GLU A 132 CB - CG - CD ANGL. DEV. = 41.5 DEGREES REMARK 500 GLU A 132 OE1 - CD - OE2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 140 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 205 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 208 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 212 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 TYR A 212 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 PHE A 242 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 266 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 266 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 266 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 284 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 284 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 287 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 295 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 PHE A 320 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 321 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 321 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 323 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 334 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 336 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 340 CD - NE - CZ ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG A 340 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 340 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 54 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -72.94 -84.44 REMARK 500 PHE A 94 -23.61 -141.51 REMARK 500 ASP A 175 74.96 -106.00 REMARK 500 GLU A 186 102.82 77.01 REMARK 500 ASN A 247 -164.78 -167.18 REMARK 500 LYS A 253 -167.44 -167.02 REMARK 500 PHE A 357 -71.26 -153.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 23 0.11 SIDE CHAIN REMARK 500 ARG A 41 0.19 SIDE CHAIN REMARK 500 ARG A 76 0.15 SIDE CHAIN REMARK 500 ARG A 208 0.13 SIDE CHAIN REMARK 500 ARG A 331 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE A 296 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 783 DISTANCE = 5.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 391 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 737 O REMARK 620 2 GLU A 217 OE2 106.7 REMARK 620 3 ASP A 255 OD1 145.9 106.4 REMARK 620 4 ASP A 257 OD1 89.6 88.5 83.1 REMARK 620 5 HIS A 220 NE2 103.3 80.9 89.9 165.1 REMARK 620 6 ASP A 255 OD2 91.5 161.6 56.2 94.7 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 392 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 394 O REMARK 620 2 GLU A 181 OE2 73.9 REMARK 620 3 GLU A 217 OE1 100.6 95.2 REMARK 620 4 ASP A 245 OD2 149.9 98.1 109.1 REMARK 620 5 ASP A 287 OD2 84.2 157.9 85.9 102.4 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 SHEET S1 IS ACTUALLY AN EIGHT-STRANDED BETA BARREL. THIS REMARK 700 IS REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST REMARK 700 AND LAST STRANDS ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 392 DBREF 1XIS A 2 388 UNP P24300 XYLA_STRRU 1 387 SEQRES 1 A 387 ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE GLY SEQRES 2 A 387 LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE GLY SEQRES 3 A 387 ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER VAL SEQRES 4 A 387 ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR PHE SEQRES 5 A 387 HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SER SEQRES 6 A 387 GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA LEU SEQRES 7 A 387 ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR ASN SEQRES 8 A 387 LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE THR SEQRES 9 A 387 ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG LYS SEQRES 10 A 387 THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY ALA SEQRES 11 A 387 GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA GLU SEQRES 12 A 387 SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP ARG SEQRES 13 A 387 MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL THR SEQRES 14 A 387 SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO LYS SEQRES 15 A 387 PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR VAL SEQRES 16 A 387 GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG PRO SEQRES 17 A 387 GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU GLN SEQRES 18 A 387 MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN ALA SEQRES 19 A 387 LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN GLY SEQRES 20 A 387 GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE GLY SEQRES 21 A 387 ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP LEU SEQRES 22 A 387 LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE ASP SEQRES 23 A 387 PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL TRP SEQRES 24 A 387 ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE LEU SEQRES 25 A 387 LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU VAL SEQRES 26 A 387 GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU ALA SEQRES 27 A 387 ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU ASP SEQRES 28 A 387 ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA ALA SEQRES 29 A 387 ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN LEU SEQRES 30 A 387 ALA MET ASP HIS LEU LEU GLY ALA ARG GLY HET MN A 391 1 HET MN A 392 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN 2(MN 2+) FORMUL 4 HOH *400(H2 O) HELIX 1 H1 LEU A 34 ALA A 44 1 11 HELIX 2 H2 SER A 63 ASP A 80 1 18 HELIX 3 H3 ASN A 107 VAL A 127 1 21 HELIX 4 H4 ARG A 152 GLN A 172 1 21 HELIX 5 H5 PRO A 194 ALA A 201 1 8 HELIX 6 H6 PRO A 216 HIS A 220 1 5 HELIX 7 H7 LEU A 226 ALA A 235 1 10 HELIX 8 H8 GLY A 263 LEU A 275 1 13 HELIX 9 H9 GLU A 294 PHE A 320 1 27 HELIX 10 H10 ALA A 322 LEU A 330 1 9 HELIX 11 H11 ASP A 345 LEU A 350 1 6 HELIX 12 H12 ASP A 361 ALA A 365 1 5 HELIX 13 H13 MET A 370 HIS A 382 1 13 SHEET 1 S1 9 PHE A 11 GLY A 14 0 SHEET 2 S1 9 ALA A 48 THR A 52 1 SHEET 3 S1 9 VAL A 86 MET A 88 1 SHEET 4 S1 9 ALA A 131 TYR A 134 1 SHEET 5 S1 9 ASP A 175 PHE A 178 1 SHEET 6 S1 9 GLU A 210 TYR A 212 1 SHEET 7 S1 9 ASP A 245 LEU A 246 1 SHEET 8 S1 9 GLY A 282 HIS A 285 1 SHEET 9 S1 9 PHE A 11 GLY A 14 1 SHEET 1 S2 2 GLY A 142 ALA A 143 0 SHEET 2 S2 2 ARG A 188 GLY A 189 1 LINK MN MN A 391 O HOH A 737 1555 1555 2.24 LINK MN MN A 391 OE2 GLU A 217 1555 1555 2.10 LINK MN MN A 391 OD1 ASP A 255 1555 1555 2.34 LINK MN MN A 391 OD1 ASP A 257 1555 1555 2.24 LINK MN MN A 391 NE2 HIS A 220 1555 1555 2.31 LINK MN MN A 391 OD2 ASP A 255 1555 1555 2.30 LINK MN MN A 392 O HOH A 394 1555 1555 2.41 LINK MN MN A 392 OE2 GLU A 181 1555 1555 2.09 LINK MN MN A 392 OE1 GLU A 217 1555 1555 2.13 LINK MN MN A 392 OD2 ASP A 245 1555 1555 2.17 LINK MN MN A 392 OD2 ASP A 287 1555 1555 2.15 CISPEP 1 GLU A 186 PRO A 187 0 19.46 SITE 1 AC1 5 GLU A 217 HIS A 220 ASP A 255 ASP A 257 SITE 2 AC1 5 HOH A 737 SITE 1 AC2 6 GLU A 181 GLU A 217 ASP A 245 ASP A 287 SITE 2 AC2 6 HOH A 394 HOH A 395 CRYST1 94.640 99.970 103.970 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010003 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009618 0.00000 MASTER 437 1 2 13 11 0 4 6 0 0 0 30 END