HEADER DNA BINDING PROTEIN 17-MAY-05 1X6E TITLE SOLUTION STRUCTURES OF THE C2H2 TYPE ZINC FINGER DOMAIN OF TITLE 2 HUMAN ZINC FINGER PROTEIN 24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2H2 TYPE ZINC FINGER DOMAIN; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 191, ZINC FINGER PROTEIN COMPND 6 KOX17, RETINOIC ACID SUPPRESSION PROTEIN A, RSG-A, ZINC COMPND 7 FINGER AND SCAN DOMAIN CONTAINING PROTEIN 3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF24; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040712-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZNF24, KOX17, ZNF191, ZSCAN3, ZINC FINGER, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 1X6E 1 VERSN REVDAT 1 17-NOV-05 1X6E 0 JRNL AUTH M.SATO,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE C2H2 TYPE ZINC FINGER JRNL TITL 2 DOMAIN OF HUMAN ZINC FINGER PROTEIN 24 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X6E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024436. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM C2H2 TYPE ZINC FINGER REMARK 210 DOMAIN U-15N, 13C; 20MM D-TRIS REMARK 210 HCL; 100MM NACL; 5MM D-DTT; REMARK 210 0.02% NAN3; 0.01MM ZNCL2, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 20 -45.94 -133.06 REMARK 500 1 GLU A 40 50.01 -97.80 REMARK 500 1 LYS A 41 67.42 -110.11 REMARK 500 1 LYS A 50 137.35 -171.22 REMARK 500 2 ILE A 8 38.15 34.37 REMARK 500 2 CYS A 20 -45.13 -132.54 REMARK 500 2 LYS A 41 69.82 -107.87 REMARK 500 2 SER A 67 145.18 -35.40 REMARK 500 3 CYS A 20 -47.84 -133.10 REMARK 500 3 CYS A 48 -43.76 -133.08 REMARK 500 3 LYS A 50 142.13 -172.10 REMARK 500 3 SER A 53 -31.76 -38.90 REMARK 500 3 THR A 66 49.49 -89.35 REMARK 500 3 PRO A 69 5.38 -69.78 REMARK 500 3 SER A 70 116.15 -29.65 REMARK 500 4 LYS A 41 54.97 30.96 REMARK 500 4 THR A 66 179.84 -51.74 REMARK 500 4 SER A 70 134.33 -37.96 REMARK 500 5 ILE A 8 146.62 -174.41 REMARK 500 5 CYS A 20 -40.96 -130.39 REMARK 500 5 LYS A 22 125.12 -33.31 REMARK 500 5 GLU A 40 39.15 -93.92 REMARK 500 5 PRO A 69 92.55 -69.79 REMARK 500 6 SER A 2 42.83 70.62 REMARK 500 6 HIS A 9 -64.66 -93.56 REMARK 500 6 SER A 10 41.88 36.19 REMARK 500 6 LYS A 13 99.79 -37.90 REMARK 500 6 LYS A 41 69.59 -108.20 REMARK 500 6 SER A 67 108.33 -168.79 REMARK 500 6 PRO A 69 91.53 -69.73 REMARK 500 7 GLU A 40 30.19 -84.69 REMARK 500 7 LYS A 41 69.39 -114.79 REMARK 500 8 SER A 5 116.49 -167.04 REMARK 500 8 LYS A 13 100.14 -38.56 REMARK 500 8 THR A 38 114.35 -33.80 REMARK 500 8 PRO A 69 -174.61 -69.77 REMARK 500 9 LYS A 50 137.97 -173.09 REMARK 500 10 ILE A 8 47.49 -80.40 REMARK 500 10 HIS A 9 74.83 -102.36 REMARK 500 10 GLU A 12 -54.31 -121.93 REMARK 500 10 LYS A 13 106.25 -44.90 REMARK 500 10 CYS A 20 -38.58 -134.39 REMARK 500 10 LYS A 22 128.02 -32.22 REMARK 500 10 LYS A 41 68.56 -113.15 REMARK 500 10 CYS A 48 -41.47 -131.42 REMARK 500 10 SER A 71 92.04 -64.22 REMARK 500 11 LYS A 13 98.95 -36.63 REMARK 500 11 PRO A 14 1.33 -69.79 REMARK 500 11 THR A 38 125.37 -38.69 REMARK 500 11 LYS A 41 69.90 -115.88 REMARK 500 11 LYS A 50 135.52 -171.01 REMARK 500 11 SER A 70 130.33 -39.16 REMARK 500 12 SER A 6 109.43 -172.88 REMARK 500 12 HIS A 9 43.79 -102.43 REMARK 500 12 GLU A 12 45.55 -84.19 REMARK 500 12 CYS A 20 -41.89 -134.80 REMARK 500 12 LYS A 22 128.31 -33.10 REMARK 500 12 THR A 38 136.02 -37.60 REMARK 500 12 LYS A 41 72.34 -115.59 REMARK 500 12 THR A 66 41.98 -108.05 REMARK 500 12 SER A 70 43.16 34.33 REMARK 500 13 CYS A 48 -41.78 -132.17 REMARK 500 14 SER A 25 -25.71 -39.34 REMARK 500 14 GLU A 40 30.70 -84.54 REMARK 500 15 SER A 5 129.63 -170.12 REMARK 500 15 CYS A 20 -46.68 -131.56 REMARK 500 15 THR A 66 83.01 -69.87 REMARK 500 16 SER A 10 105.96 -50.25 REMARK 500 16 GLU A 12 44.35 -105.19 REMARK 500 16 CYS A 20 -41.51 -134.89 REMARK 500 16 LYS A 22 118.82 -33.83 REMARK 500 16 THR A 38 129.77 -39.46 REMARK 500 16 LYS A 41 61.24 -114.03 REMARK 500 16 LYS A 50 144.02 -170.12 REMARK 500 17 SER A 5 140.09 -174.88 REMARK 500 17 HIS A 9 53.72 34.41 REMARK 500 17 LYS A 13 100.31 -34.01 REMARK 500 17 CYS A 20 -34.96 -131.32 REMARK 500 17 LYS A 22 126.07 -33.77 REMARK 500 17 LYS A 41 71.89 -114.06 REMARK 500 17 SER A 67 81.49 -66.23 REMARK 500 18 LYS A 13 102.49 -40.12 REMARK 500 18 CYS A 20 -45.40 -134.79 REMARK 500 18 GLU A 40 35.08 -95.26 REMARK 500 18 LYS A 41 65.36 -117.16 REMARK 500 18 SER A 67 144.50 -35.39 REMARK 500 19 VAL A 18 28.31 35.77 REMARK 500 19 GLU A 19 -40.05 -132.34 REMARK 500 19 THR A 38 119.75 -175.04 REMARK 500 19 THR A 66 93.78 -65.53 REMARK 500 19 PRO A 69 3.00 -69.75 REMARK 500 20 SER A 6 -75.72 -53.22 REMARK 500 20 CYS A 20 -45.15 -132.05 REMARK 500 20 THR A 38 143.90 -34.57 REMARK 500 20 LYS A 41 71.34 -114.35 REMARK 500 20 LYS A 50 131.92 -173.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 17 SG REMARK 620 2 CYS A 20 SG 115.5 REMARK 620 3 HIS A 33 NE2 115.5 85.2 REMARK 620 4 HIS A 37 NE2 115.4 109.8 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 CYS A 48 SG 115.5 REMARK 620 3 HIS A 61 NE2 116.4 86.0 REMARK 620 4 HIS A 65 NE2 116.8 117.7 98.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000602.1 RELATED DB: TARGETDB DBREF 1X6E A 8 66 UNP P17028 ZNF24_HUMAN 272 330 SEQADV 1X6E GLY A 1 UNP P17028 CLONING ARTIFACT SEQADV 1X6E SER A 2 UNP P17028 CLONING ARTIFACT SEQADV 1X6E SER A 3 UNP P17028 CLONING ARTIFACT SEQADV 1X6E GLY A 4 UNP P17028 CLONING ARTIFACT SEQADV 1X6E SER A 5 UNP P17028 CLONING ARTIFACT SEQADV 1X6E SER A 6 UNP P17028 CLONING ARTIFACT SEQADV 1X6E GLY A 7 UNP P17028 CLONING ARTIFACT SEQADV 1X6E SER A 67 UNP P17028 CLONING ARTIFACT SEQADV 1X6E GLY A 68 UNP P17028 CLONING ARTIFACT SEQADV 1X6E PRO A 69 UNP P17028 CLONING ARTIFACT SEQADV 1X6E SER A 70 UNP P17028 CLONING ARTIFACT SEQADV 1X6E SER A 71 UNP P17028 CLONING ARTIFACT SEQADV 1X6E GLY A 72 UNP P17028 CLONING ARTIFACT SEQRES 1 A 72 GLY SER SER GLY SER SER GLY ILE HIS SER GLY GLU LYS SEQRES 2 A 72 PRO TYR GLY CYS VAL GLU CYS GLY LYS ALA PHE SER ARG SEQRES 3 A 72 SER SER ILE LEU VAL GLN HIS GLN ARG VAL HIS THR GLY SEQRES 4 A 72 GLU LYS PRO TYR LYS CYS LEU GLU CYS GLY LYS ALA PHE SEQRES 5 A 72 SER GLN ASN SER GLY LEU ILE ASN HIS GLN ARG ILE HIS SEQRES 6 A 72 THR SER GLY PRO SER SER GLY HET ZN A 201 1 HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 ARG A 26 VAL A 36 1 11 HELIX 2 2 HIS A 37 GLY A 39 5 3 HELIX 3 3 GLN A 54 SER A 67 1 14 SHEET 1 A 2 TYR A 15 GLY A 16 0 SHEET 2 A 2 ALA A 23 PHE A 24 -1 O PHE A 24 N TYR A 15 SHEET 1 B 2 TYR A 43 LYS A 44 0 SHEET 2 B 2 ALA A 51 PHE A 52 -1 O PHE A 52 N TYR A 43 LINK ZN ZN A 201 SG CYS A 17 1555 1555 2.37 LINK ZN ZN A 201 SG CYS A 20 1555 1555 2.36 LINK ZN ZN A 201 NE2 HIS A 33 1555 1555 2.36 LINK ZN ZN A 201 NE2 HIS A 37 1555 1555 2.36 LINK ZN ZN A 401 SG CYS A 45 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 48 1555 1555 2.33 LINK ZN ZN A 401 NE2 HIS A 61 1555 1555 2.36 LINK ZN ZN A 401 NE2 HIS A 65 1555 1555 2.34 SITE 1 AC1 4 CYS A 17 CYS A 20 HIS A 33 HIS A 37 SITE 1 AC2 4 CYS A 45 CYS A 48 HIS A 61 HIS A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 200 0 2 3 4 0 2 6 0 0 0 6 END