HEADER TRANSCRIPTION 17-MAY-05 1X5W TITLE SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC-BINDING DOMAIN OF TITLE 2 HUMAN ZINC FINGER PROTEIN 64, ISOFORMS 1 AND 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 64, ISOFORMS 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2H2 TYPE ZINC-BINDING DOMAIN; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 338; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZFP64; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040809-09; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZINC FINGER PROTEIN 338, ZNF338, NUCLEAR PROTEIN, DNA KEYWDS 2 BINDING, TRANSCRIPTION, C2H2 TYPE ZINC FINGER, STRUCTURAL KEYWDS 3 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,S.KOSHIBA,N.TOCHIO,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 24-FEB-09 1X5W 1 VERSN REVDAT 2 17-JAN-06 1X5W 1 JRNL TITLE REVDAT 1 17-NOV-05 1X5W 0 JRNL AUTH M.YONEYAMA,S.KOSHIBA,N.TOCHIO,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC-BINDING JRNL TITL 2 DOMAIN OF HUMAN ZINC FINGER PROTEIN 64, ISOFORMS 1 JRNL TITL 3 AND 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X5W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024418. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.25MM C2H2 TYPE ZINC-BINDING REMARK 210 DOMAIN U-15N, 13C; 20MM D-TRIS REMARK 210 -HCL(PH7.0); 100MM NACL; 1MM D REMARK 210 -DTT;0.02% NAN3; 50UM ZNCL2 ; REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.921, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 16 37.33 -84.88 REMARK 500 1 HIS A 32 46.52 -89.54 REMARK 500 1 SER A 44 43.83 -89.44 REMARK 500 1 HIS A 61 57.11 -96.94 REMARK 500 1 ASP A 63 40.63 -89.83 REMARK 500 1 SER A 68 43.79 -89.32 REMARK 500 2 SER A 2 41.84 35.47 REMARK 500 2 SER A 3 42.25 -109.64 REMARK 500 2 SER A 6 81.92 -66.20 REMARK 500 2 SER A 16 35.79 -84.86 REMARK 500 2 SER A 20 41.24 -99.37 REMARK 500 2 SER A 21 124.00 -173.87 REMARK 500 2 THR A 34 78.13 -66.90 REMARK 500 2 SER A 44 45.76 -82.93 REMARK 500 2 PHE A 60 -63.35 -92.33 REMARK 500 2 HIS A 61 49.81 -80.40 REMARK 500 2 SER A 68 131.68 -175.20 REMARK 500 2 SER A 69 106.33 -161.61 REMARK 500 3 HIS A 8 157.33 -49.85 REMARK 500 3 THR A 34 90.48 -58.61 REMARK 500 3 SER A 44 44.81 -84.49 REMARK 500 3 ASP A 63 77.48 -64.12 REMARK 500 4 SER A 5 114.61 -35.34 REMARK 500 4 HIS A 8 151.85 -46.85 REMARK 500 4 SER A 16 37.64 -85.72 REMARK 500 4 SER A 20 42.57 -83.77 REMARK 500 4 SER A 21 112.61 -172.62 REMARK 500 4 HIS A 32 46.09 -89.60 REMARK 500 4 THR A 34 112.83 -36.28 REMARK 500 4 ASP A 35 -62.06 -132.06 REMARK 500 4 SER A 44 46.56 -87.66 REMARK 500 4 LYS A 48 35.36 -85.20 REMARK 500 4 HIS A 56 -34.43 -38.07 REMARK 500 4 PHE A 60 -66.02 -90.05 REMARK 500 4 ASP A 63 43.32 73.71 REMARK 500 4 MET A 64 46.18 -106.77 REMARK 500 4 SER A 65 -58.60 -122.32 REMARK 500 4 SER A 69 102.61 -53.78 REMARK 500 5 SER A 20 38.45 -97.40 REMARK 500 5 SER A 21 117.30 -167.36 REMARK 500 5 ASP A 35 -65.12 -103.28 REMARK 500 5 SER A 44 38.70 -84.25 REMARK 500 5 HIS A 61 52.63 -96.85 REMARK 500 5 ASP A 63 47.93 -80.44 REMARK 500 6 SER A 16 43.36 -82.39 REMARK 500 6 HIS A 32 68.73 -100.84 REMARK 500 6 THR A 34 44.76 34.34 REMARK 500 6 SER A 44 43.22 -94.45 REMARK 500 6 HIS A 61 54.22 -94.03 REMARK 500 6 PRO A 67 84.79 -69.73 REMARK 500 7 SER A 16 31.64 -88.00 REMARK 500 7 SER A 20 39.50 -84.90 REMARK 500 7 SER A 21 118.91 -167.74 REMARK 500 7 SER A 44 41.80 -89.56 REMARK 500 7 PHE A 60 -64.25 -96.23 REMARK 500 7 HIS A 61 49.55 -76.77 REMARK 500 8 SER A 16 37.86 -85.08 REMARK 500 8 HIS A 32 50.11 -96.49 REMARK 500 8 SER A 44 44.49 -85.46 REMARK 500 8 HIS A 61 46.08 -86.85 REMARK 500 8 MET A 64 107.11 -40.25 REMARK 500 9 SER A 5 147.50 -39.09 REMARK 500 9 GLU A 14 -50.45 -120.82 REMARK 500 9 SER A 16 39.17 -82.26 REMARK 500 9 CYS A 33 -50.71 -123.93 REMARK 500 9 SER A 44 38.95 -82.54 REMARK 500 9 HIS A 61 46.70 -83.27 REMARK 500 9 PRO A 67 -177.23 -69.76 REMARK 500 10 SER A 3 148.95 -34.73 REMARK 500 10 SER A 5 42.44 -94.35 REMARK 500 10 SER A 16 38.93 -87.05 REMARK 500 10 HIS A 32 -62.25 -94.50 REMARK 500 10 CYS A 33 173.38 -47.50 REMARK 500 10 SER A 44 46.36 -89.92 REMARK 500 10 HIS A 56 -36.73 -38.99 REMARK 500 10 HIS A 61 62.15 -106.55 REMARK 500 10 MET A 64 133.60 -34.60 REMARK 500 11 SER A 16 39.84 -89.98 REMARK 500 11 HIS A 32 46.31 -102.06 REMARK 500 11 SER A 44 31.38 -88.65 REMARK 500 11 HIS A 61 47.10 -78.10 REMARK 500 11 ASP A 63 95.97 -42.39 REMARK 500 11 SER A 65 42.58 -90.56 REMARK 500 11 SER A 69 -53.26 -124.24 REMARK 500 12 HIS A 8 146.03 -34.70 REMARK 500 12 GLU A 14 -42.05 -134.98 REMARK 500 12 SER A 16 38.72 -83.28 REMARK 500 12 HIS A 32 41.26 -98.22 REMARK 500 12 CYS A 33 51.51 -91.95 REMARK 500 12 THR A 34 113.30 -163.67 REMARK 500 12 ASP A 35 -59.26 -122.26 REMARK 500 12 SER A 44 44.47 -84.69 REMARK 500 12 HIS A 56 -36.03 -38.20 REMARK 500 12 HIS A 61 54.10 -92.09 REMARK 500 13 SER A 6 37.82 -99.40 REMARK 500 13 SER A 16 36.47 -86.64 REMARK 500 13 HIS A 32 51.18 -93.21 REMARK 500 13 ASP A 35 -38.66 -131.62 REMARK 500 13 SER A 44 46.61 -81.44 REMARK 500 13 HIS A 61 55.71 -94.00 REMARK 500 13 MET A 64 34.82 -96.49 REMARK 500 14 SER A 16 40.94 -86.60 REMARK 500 14 SER A 44 41.62 -85.50 REMARK 500 14 LYS A 48 37.16 -90.36 REMARK 500 14 HIS A 61 46.64 -81.71 REMARK 500 14 ASP A 63 -53.29 -132.71 REMARK 500 14 PRO A 67 89.91 -69.73 REMARK 500 14 SER A 68 -55.94 -132.56 REMARK 500 15 SER A 16 36.56 -87.14 REMARK 500 15 HIS A 32 42.98 -83.76 REMARK 500 15 SER A 44 35.07 -86.49 REMARK 500 15 PHE A 60 -61.45 -95.10 REMARK 500 15 HIS A 61 42.66 -86.43 REMARK 500 15 PRO A 67 0.67 -69.76 REMARK 500 15 SER A 69 -44.55 -130.88 REMARK 500 16 SER A 5 117.43 -164.24 REMARK 500 16 SER A 16 38.21 -86.78 REMARK 500 16 HIS A 32 -74.10 -89.83 REMARK 500 16 CYS A 33 35.07 37.41 REMARK 500 16 SER A 44 42.37 -89.05 REMARK 500 16 HIS A 61 38.64 -86.84 REMARK 500 16 ASP A 63 46.68 -83.06 REMARK 500 17 SER A 16 34.88 -87.74 REMARK 500 17 SER A 20 42.64 -95.41 REMARK 500 17 SER A 21 143.40 -170.51 REMARK 500 17 SER A 44 41.38 -88.95 REMARK 500 17 PHE A 60 -60.35 -100.44 REMARK 500 18 SER A 16 34.73 -82.79 REMARK 500 18 GLU A 29 -37.24 -38.80 REMARK 500 18 ILE A 31 -35.96 -38.10 REMARK 500 18 SER A 44 47.29 -79.33 REMARK 500 18 HIS A 61 43.40 -81.04 REMARK 500 18 ASP A 63 42.69 -80.58 REMARK 500 18 PRO A 67 3.38 -69.73 REMARK 500 19 SER A 16 37.17 -88.73 REMARK 500 19 HIS A 32 35.87 -95.55 REMARK 500 19 CYS A 33 147.37 -172.74 REMARK 500 19 SER A 44 37.62 -83.63 REMARK 500 19 HIS A 61 57.82 -100.18 REMARK 500 19 ASP A 63 41.31 -85.07 REMARK 500 19 SER A 69 107.42 -45.84 REMARK 500 20 SER A 5 71.39 -116.50 REMARK 500 20 SER A 20 39.65 -96.89 REMARK 500 20 SER A 21 -175.87 -173.90 REMARK 500 20 THR A 34 74.81 -101.13 REMARK 500 20 SER A 44 43.79 -79.95 REMARK 500 20 PHE A 60 -62.49 -92.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 12 SG REMARK 620 2 CYS A 15 SG 117.4 REMARK 620 3 HIS A 28 NE2 101.4 93.6 REMARK 620 4 HIS A 32 NE2 109.6 116.2 117.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 40 SG REMARK 620 2 CYS A 43 SG 115.0 REMARK 620 3 HIS A 56 NE2 100.3 100.0 REMARK 620 4 HIS A 61 NE2 111.3 113.7 115.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003730.1 RELATED DB: TARGETDB DBREF 1X5W A 8 64 UNP Q9NPA5 ZF64A_HUMAN 341 397 SEQADV 1X5W GLY A 1 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W SER A 2 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W SER A 3 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W GLY A 4 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W SER A 5 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W SER A 6 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W GLY A 7 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W SER A 65 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W GLY A 66 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W PRO A 67 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W SER A 68 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W SER A 69 UNP Q9NPA5 CLONING ARTIFACT SEQADV 1X5W GLY A 70 UNP Q9NPA5 CLONING ARTIFACT SEQRES 1 A 70 GLY SER SER GLY SER SER GLY HIS PRO GLU LYS CYS SER SEQRES 2 A 70 GLU CYS SER TYR SER CYS SER SER LYS ALA ALA LEU ARG SEQRES 3 A 70 ILE HIS GLU ARG ILE HIS CYS THR ASP ARG PRO PHE LYS SEQRES 4 A 70 CYS ASN TYR CYS SER PHE ASP THR LYS GLN PRO SER ASN SEQRES 5 A 70 LEU SER LYS HIS MET LYS LYS PHE HIS GLY ASP MET SER SEQRES 6 A 70 GLY PRO SER SER GLY HET ZN A 201 1 HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 SER A 21 ARG A 30 1 10 HELIX 2 2 ILE A 31 CYS A 33 5 3 HELIX 3 3 GLN A 49 GLY A 62 1 14 SHEET 1 A 2 GLU A 10 LYS A 11 0 SHEET 2 A 2 SER A 18 CYS A 19 -1 O CYS A 19 N GLU A 10 SHEET 1 B 2 PHE A 38 LYS A 39 0 SHEET 2 B 2 ASP A 46 THR A 47 -1 O THR A 47 N PHE A 38 LINK ZN ZN A 201 SG CYS A 12 1555 1555 2.34 LINK ZN ZN A 201 SG CYS A 15 1555 1555 2.34 LINK ZN ZN A 201 NE2 HIS A 28 1555 1555 2.35 LINK ZN ZN A 201 NE2 HIS A 32 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 40 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 43 1555 1555 2.36 LINK ZN ZN A 401 NE2 HIS A 56 1555 1555 2.35 LINK ZN ZN A 401 NE2 HIS A 61 1555 1555 2.36 SITE 1 AC1 4 CYS A 12 CYS A 15 HIS A 28 HIS A 32 SITE 1 AC2 4 CYS A 40 CYS A 43 HIS A 56 HIS A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 252 0 2 3 4 0 2 6 0 0 0 6 END