HEADER LIGASE 15-MAY-05 1X55 TITLE CRYSTAL STRUCTURE OF ASPARAGINYL-TRNA SYNTHETASE FROM PYROCOCCUS TITLE 2 HORIKOSHII COMPLEXED WITH ASPARAGINYL-ADENYLATE ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARAGINYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARAGINE-TRNA LIGASE, ASNRS; COMPND 5 EC: 6.1.1.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS AMINOACYL-TRNA SYNTHETASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 2 INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR W.IWASAKI,S.SEKINE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 5 13-JUL-11 1X55 1 VERSN REVDAT 4 24-FEB-09 1X55 1 VERSN REVDAT 3 18-JUL-06 1X55 1 JRNL REVDAT 2 06-JUN-06 1X55 1 TITLE REVDAT 1 23-MAY-06 1X55 0 JRNL AUTH W.IWASAKI,S.SEKINE,C.KUROISHI,S.KURAMITSU,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL STRUCTURAL BASIS OF THE WATER-ASSISTED ASPARAGINE JRNL TITL 2 RECOGNITION BY ASPARAGINYL-TRNA SYNTHETASE. JRNL REF J.MOL.BIOL. V. 360 329 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16753178 JRNL DOI 10.1016/J.JMB.2006.04.068 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 48035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2529 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2759 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : 1.28000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3671 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4973 ; 1.374 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 6.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;33.706 ;23.605 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 652 ;13.392 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.725 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2767 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1695 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 354 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 106 ; 0.147 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 44 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2242 ; 0.885 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3507 ; 1.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1676 ; 2.268 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1466 ; 3.360 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1B8A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.10600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.01200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.10600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.01200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE TWO FOLD AXIS: -X, Y, -Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -34.73436 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.15273 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1054 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1576 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1358 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1363 O HOH A 1579 2.04 REMARK 500 O HOH A 1569 O HOH A 1904 2.09 REMARK 500 OG1 THR A 128 O HOH A 1564 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 41 CB - CG - OD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 81 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 340 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 384 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 417 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 179 -118.84 56.99 REMARK 500 SER A 188 141.76 -179.93 REMARK 500 GLU A 201 -56.06 65.06 REMARK 500 TRP A 233 -22.73 79.89 REMARK 500 PRO A 352 -169.97 -77.18 REMARK 500 TYR A 394 59.76 -111.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1358 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A1433 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH A1576 DISTANCE = 5.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A3001 O2 REMARK 620 2 NSS A3002 OAY 89.6 REMARK 620 3 HOH A1028 O 175.5 93.4 REMARK 620 4 HOH A1052 O 91.0 87.3 85.8 REMARK 620 5 GLU A 357 OE1 79.2 82.8 104.5 166.1 REMARK 620 6 HOH A1033 O 92.1 171.3 85.5 101.2 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1033 O REMARK 620 2 HOH A1155 O 78.9 REMARK 620 3 HOH A1048 O 167.0 92.5 REMARK 620 4 HOH A1087 O 87.3 95.2 83.7 REMARK 620 5 HOH A1122 O 102.1 169.9 88.1 94.9 REMARK 620 6 HOH A1029 O 91.9 81.0 96.4 176.1 88.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NSS A 3002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X54 RELATED DB: PDB REMARK 900 RELATED ID: 1X56 RELATED DB: PDB REMARK 900 RELATED ID: PHO001000241.2 RELATED DB: TARGETDB DBREF 1X55 A 1 434 UNP O57980 SYN_PYRHO 1 434 SEQRES 1 A 434 MET ILE GLU LYS VAL TYR CYS GLN GLU VAL LYS PRO GLU SEQRES 2 A 434 LEU ASP GLY LYS LYS VAL ARG LEU ALA GLY TRP VAL TYR SEQRES 3 A 434 THR ASN MET ARG VAL GLY LYS LYS ILE PHE LEU TRP ILE SEQRES 4 A 434 ARG ASP SER THR GLY ILE VAL GLN ALA VAL VAL ALA LYS SEQRES 5 A 434 ASN VAL VAL GLY GLU GLU THR PHE GLU LYS ALA LYS LYS SEQRES 6 A 434 LEU GLY ARG GLU SER SER VAL ILE VAL GLU GLY ILE VAL SEQRES 7 A 434 LYS ALA ASP GLU ARG ALA PRO GLY GLY ALA GLU VAL HIS SEQRES 8 A 434 VAL GLU LYS LEU GLU VAL ILE GLN ALA VAL SER GLU PHE SEQRES 9 A 434 PRO ILE PRO GLU ASN PRO GLU GLN ALA SER PRO GLU LEU SEQRES 10 A 434 LEU LEU ASP TYR ARG HIS LEU HIS ILE ARG THR PRO LYS SEQRES 11 A 434 ALA SER ALA ILE MET LYS VAL LYS GLU THR LEU ILE MET SEQRES 12 A 434 ALA ALA ARG GLU TRP LEU LEU LYS ASP GLY TRP HIS GLU SEQRES 13 A 434 VAL PHE PRO PRO ILE LEU VAL THR GLY ALA VAL GLU GLY SEQRES 14 A 434 GLY ALA THR LEU PHE LYS LEU LYS TYR PHE ASP LYS TYR SEQRES 15 A 434 ALA TYR LEU SER GLN SER ALA GLN LEU TYR LEU GLU ALA SEQRES 16 A 434 ALA ILE PHE GLY LEU GLU LYS VAL TRP SER LEU THR PRO SEQRES 17 A 434 SER PHE ARG ALA GLU LYS SER ARG THR ARG ARG HIS LEU SEQRES 18 A 434 THR GLU PHE TRP HIS LEU GLU LEU GLU ALA ALA TRP MET SEQRES 19 A 434 ASP LEU TRP ASP ILE MET LYS VAL GLU GLU GLU LEU VAL SEQRES 20 A 434 SER TYR MET VAL GLN ARG THR LEU GLU LEU ARG LYS LYS SEQRES 21 A 434 GLU ILE GLU MET PHE ARG ASP ASP LEU THR THR LEU LYS SEQRES 22 A 434 ASN THR GLU PRO PRO PHE PRO ARG ILE SER TYR ASP GLU SEQRES 23 A 434 ALA ILE ASP ILE LEU GLN SER LYS GLY VAL ASN VAL GLU SEQRES 24 A 434 TRP GLY ASP ASP LEU GLY ALA ASP GLU GLU ARG VAL LEU SEQRES 25 A 434 THR GLU GLU PHE ASP ARG PRO PHE PHE VAL TYR GLY TYR SEQRES 26 A 434 PRO LYS HIS ILE LYS ALA PHE TYR MET LYS GLU ASP PRO SEQRES 27 A 434 ASN ASP PRO ARG LYS VAL LEU ALA SER ASP MET LEU ALA SEQRES 28 A 434 PRO GLU GLY TYR GLY GLU ILE ILE GLY GLY SER GLN ARG SEQRES 29 A 434 GLU ASP ASP TYR ASP LYS LEU LEU ASN ARG ILE LEU GLU SEQRES 30 A 434 GLU GLY MET ASP PRO LYS ASP TYR GLU TRP TYR LEU ASP SEQRES 31 A 434 LEU ARG ARG TYR GLY SER VAL PRO HIS SER GLY PHE GLY SEQRES 32 A 434 LEU GLY VAL GLU ARG LEU VAL ALA TRP VAL LEU LYS LEU SEQRES 33 A 434 ASP HIS ILE ARG TRP ALA ALA LEU PHE PRO ARG THR PRO SEQRES 34 A 434 ALA ARG LEU TYR PRO HET PO4 A3001 5 HET MG A2001 1 HET MG A2002 1 HET NSS A3002 31 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM NSS 5'-O-[N-(L-ASPARAGINYL)SULFAMOYL]ADENOSINE HETSYN NSS ASN-SA FORMUL 2 PO4 O4 P 3- FORMUL 3 MG 2(MG 2+) FORMUL 5 NSS C14 H21 N8 O8 S 1+ FORMUL 6 HOH *368(H2 O) HELIX 1 1 TYR A 6 VAL A 10 5 5 HELIX 2 2 LYS A 11 ASP A 15 5 5 HELIX 3 3 ALA A 51 LYS A 65 1 15 HELIX 4 4 ALA A 84 GLY A 86 5 3 HELIX 5 5 ASN A 109 ALA A 113 5 5 HELIX 6 6 SER A 114 TYR A 121 1 8 HELIX 7 7 TYR A 121 ILE A 126 1 6 HELIX 8 8 THR A 128 ASP A 152 1 25 HELIX 9 9 GLY A 169 LEU A 173 5 5 HELIX 10 10 ALA A 189 GLU A 201 1 13 HELIX 11 11 ASP A 235 ARG A 258 1 24 HELIX 12 12 ARG A 258 MET A 264 1 7 HELIX 13 13 LEU A 269 ASN A 274 1 6 HELIX 14 14 TYR A 284 LYS A 294 1 11 HELIX 15 15 GLY A 305 THR A 313 1 9 HELIX 16 16 GLU A 314 PHE A 316 5 3 HELIX 17 17 PRO A 326 LYS A 330 5 5 HELIX 18 18 ASP A 367 GLU A 378 1 12 HELIX 19 19 ASP A 381 ASP A 384 5 4 HELIX 20 20 TYR A 385 LEU A 391 1 7 HELIX 21 21 VAL A 406 LEU A 414 1 9 HELIX 22 22 HIS A 418 ALA A 423 5 6 SHEET 1 A 6 LYS A 18 VAL A 31 0 SHEET 2 A 6 LYS A 34 ASP A 41 -1 O TRP A 38 N TYR A 26 SHEET 3 A 6 GLY A 44 VAL A 50 -1 O VAL A 50 N ILE A 35 SHEET 4 A 6 ALA A 88 GLN A 99 1 O VAL A 90 N VAL A 49 SHEET 5 A 6 SER A 71 ALA A 80 -1 N ILE A 73 O GLU A 96 SHEET 6 A 6 LYS A 18 VAL A 31 -1 N LEU A 21 O VAL A 74 SHEET 1 B 8 HIS A 155 GLU A 156 0 SHEET 2 B 8 LYS A 202 PHE A 210 1 O LYS A 202 N HIS A 155 SHEET 3 B 8 GLU A 223 ALA A 232 -1 O PHE A 224 N SER A 209 SHEET 4 B 8 HIS A 399 GLY A 405 -1 O LEU A 404 N LEU A 227 SHEET 5 B 8 GLY A 356 GLN A 363 -1 N ILE A 358 O GLY A 405 SHEET 6 B 8 ALA A 346 ALA A 351 -1 N MET A 349 O ILE A 358 SHEET 7 B 8 PHE A 320 TYR A 323 -1 N PHE A 320 O LEU A 350 SHEET 8 B 8 ARG A 281 SER A 283 1 N ILE A 282 O PHE A 321 SHEET 1 C 3 LEU A 162 VAL A 163 0 SHEET 2 C 3 LYS A 181 LEU A 185 -1 O TYR A 184 N VAL A 163 SHEET 3 C 3 LYS A 175 TYR A 178 -1 N TYR A 178 O LYS A 181 LINK MG MG A2001 O2 PO4 A3001 1555 1555 2.63 LINK MG MG A2001 OAY NSS A3002 1555 1555 2.37 LINK MG MG A2001 O HOH A1028 1555 1555 2.33 LINK MG MG A2001 O HOH A1052 1555 1555 2.43 LINK MG MG A2001 OE1 GLU A 357 1555 1555 2.36 LINK MG MG A2001 O HOH A1033 1555 1555 2.49 LINK MG MG A2002 O HOH A1033 1555 1555 2.52 LINK MG MG A2002 O HOH A1155 1555 1555 2.48 LINK MG MG A2002 O HOH A1048 1555 1555 2.45 LINK MG MG A2002 O HOH A1087 1555 1555 2.36 LINK MG MG A2002 O HOH A1122 1555 1555 2.33 LINK MG MG A2002 O HOH A1029 1555 1555 2.46 CISPEP 1 PRO A 277 PRO A 278 0 -8.06 CISPEP 2 TYR A 433 PRO A 434 0 7.75 SITE 1 AC1 6 HIS A 220 GLU A 357 ARG A 408 HOH A1103 SITE 2 AC1 6 MG A2001 NSS A3002 SITE 1 AC2 6 GLU A 357 HOH A1028 HOH A1033 HOH A1052 SITE 2 AC2 6 PO4 A3001 NSS A3002 SITE 1 AC3 6 HOH A1029 HOH A1033 HOH A1048 HOH A1087 SITE 2 AC3 6 HOH A1122 HOH A1155 SITE 1 AC4 26 GLU A 168 SER A 188 GLN A 190 ARG A 211 SITE 2 AC4 26 HIS A 220 LEU A 221 PHE A 224 HIS A 226 SITE 3 AC4 26 GLU A 228 TYR A 333 GLU A 357 ILE A 358 SITE 4 AC4 26 ILE A 359 GLY A 360 ARG A 364 PHE A 402 SITE 5 AC4 26 GLY A 403 GLY A 405 ARG A 408 ILE A 419 SITE 6 AC4 26 HOH A1004 HOH A1009 HOH A1011 HOH A1056 SITE 7 AC4 26 MG A2001 PO4 A3001 CRYST1 126.212 68.024 75.604 90.00 117.35 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007923 0.000000 0.004098 0.00000 SCALE2 0.000000 0.014701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014891 0.00000 MASTER 368 0 4 22 17 0 13 6 0 0 0 34 END