HEADER OXIDOREDUCTASE 24-MAR-05 1X0L TITLE CRYSTAL STRUCTURE OF TETRAMERIC HOMOISOCITRATE DEHYDROGENASE FROM AN TITLE 2 EXTREME THERMOPHILE, THERMUS THERMOPHILUS CAVEAT 1X0L CHIRALITY ERROR AT THE CA CENTER OF ARG A 75 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOISOCITRATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.87; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: HICDH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B(+) KEYWDS OXIDOREDUCTASE, DECARBOXYLATING DEHYDROGENASE, LYSINE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR J.MIYAZAKI,K.ASADA,S.FUSHINOBU,T.KUZUYAMA,M.NISHIYAMA REVDAT 3 13-JUL-11 1X0L 1 VERSN REVDAT 2 24-FEB-09 1X0L 1 VERSN REVDAT 1 04-OCT-05 1X0L 0 JRNL AUTH J.MIYAZAKI,K.ASADA,S.FUSHINOBU,T.KUZUYAMA,M.NISHIYAMA JRNL TITL CRYSTAL STRUCTURE OF TETRAMERIC HOMOISOCITRATE DEHYDROGENASE JRNL TITL 2 FROM AN EXTREME THERMOPHILE, THERMUS THERMOPHILUS: JRNL TITL 3 INVOLVEMENT OF HYDROPHOBIC DIMER-DIMER INTERACTION IN JRNL TITL 4 EXTREMELY HIGH THERMOTOLERANCE JRNL REF J.BACTERIOL. V. 187 6779 2005 JRNL REFN ISSN 0021-9193 JRNL PMID 16166541 JRNL DOI 10.1128/JB.187.19.6779-6788.2005 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3039919.400 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 66504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3357 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10219 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 562 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 378 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.06000 REMARK 3 B22 (A**2) : 5.23000 REMARK 3 B33 (A**2) : -3.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.46 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.460 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.170 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.010 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.550 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 50.14 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : CIS_PEPTIDE11.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB024228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.92300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.92300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.48150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.62150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.48150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.62150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.92300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.48150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.62150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.92300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.48150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.62150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: X, -Y, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 72 REMARK 465 PRO B 73 REMARK 465 THR B 74 REMARK 465 ARG B 75 REMARK 465 LYS B 76 REMARK 465 PRO B 264 REMARK 465 ASP B 265 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 209 CZ ARG A 216 1.63 REMARK 500 NE2 GLN A 209 NE ARG A 216 1.92 REMARK 500 NE2 GLN A 209 NH1 ARG A 216 1.97 REMARK 500 CD GLN A 209 NH1 ARG A 216 2.14 REMARK 500 CB GLN A 209 NH2 ARG A 216 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 307 NE2 GLN B 199 3555 1.17 REMARK 500 NH2 ARG A 307 CD GLN B 199 3555 1.67 REMARK 500 OD2 ASP B 317 OD2 ASP B 317 3555 2.01 REMARK 500 NH2 ARG A 307 OE1 GLN B 199 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 75 CA ARG A 75 CB -0.564 REMARK 500 ARG A 75 CG ARG A 75 CD -0.229 REMARK 500 ARG A 75 NE ARG A 75 CZ -0.153 REMARK 500 ARG A 75 CZ ARG A 75 NH1 -0.215 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 75 CB - CA - C ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 75 N - CA - CB ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 75 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 LYS A 76 CB - CA - C ANGL. DEV. = 20.0 DEGREES REMARK 500 ASN A 120 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG A 213 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 LYS B 191 CB - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 LYS B 269 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 113 89.14 -156.62 REMARK 500 LEU A 133 -118.37 59.65 REMARK 500 ASP A 218 -78.67 -125.99 REMARK 500 ASN A 224 -93.90 -29.37 REMARK 500 ALA A 263 60.23 36.39 REMARK 500 GLU A 290 62.84 -101.53 REMARK 500 ASP B 113 86.60 -160.21 REMARK 500 LEU B 133 -120.43 56.84 REMARK 500 ASP B 218 -80.18 -120.94 REMARK 500 ASN B 224 -87.37 -40.60 REMARK 500 ALA B 267 169.05 84.36 REMARK 500 GLU B 290 62.27 -104.56 REMARK 500 PRO B 309 177.69 -54.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG A 75 -4.3 L D EXPECTING SP3 REMARK 500 LYS A 76 22.9 L L OUTSIDE RANGE REMARK 500 LYS B 191 22.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 519 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A 525 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH A 575 DISTANCE = 5.31 ANGSTROMS DBREF 1X0L A 2 334 UNP Q8RQU4 Q8RQU4_THETH 2 334 DBREF 1X0L B 2 334 UNP Q8RQU4 Q8RQU4_THETH 2 334 SEQRES 1 A 333 ALA TYR ARG ILE CYS LEU ILE GLU GLY ASP GLY ILE GLY SEQRES 2 A 333 HIS GLU VAL ILE PRO ALA ALA ARG ARG VAL LEU GLU ALA SEQRES 3 A 333 THR GLY LEU PRO LEU GLU PHE VAL GLU ALA GLU ALA GLY SEQRES 4 A 333 TRP GLU THR PHE GLU ARG ARG GLY THR SER VAL PRO GLU SEQRES 5 A 333 GLU THR VAL GLU LYS ILE LEU SER CYS HIS ALA THR LEU SEQRES 6 A 333 PHE GLY ALA ALA THR SER PRO THR ARG LYS VAL PRO GLY SEQRES 7 A 333 PHE PHE GLY ALA ILE ARG TYR LEU ARG ARG ARG LEU ASP SEQRES 8 A 333 LEU TYR ALA ASN VAL ARG PRO ALA LYS SER ARG PRO VAL SEQRES 9 A 333 PRO GLY SER ARG PRO GLY VAL ASP LEU VAL ILE VAL ARG SEQRES 10 A 333 GLU ASN THR GLU GLY LEU TYR VAL GLU GLN GLU ARG ARG SEQRES 11 A 333 TYR LEU ASP VAL ALA ILE ALA ASP ALA VAL ILE SER LYS SEQRES 12 A 333 LYS ALA SER GLU ARG ILE GLY ARG ALA ALA LEU ARG ILE SEQRES 13 A 333 ALA GLU GLY ARG PRO ARG LYS THR LEU HIS ILE ALA HIS SEQRES 14 A 333 LYS ALA ASN VAL LEU PRO LEU THR GLN GLY LEU PHE LEU SEQRES 15 A 333 ASP THR VAL LYS GLU VAL ALA LYS ASP PHE PRO LEU VAL SEQRES 16 A 333 ASN VAL GLN ASP ILE ILE VAL ASP ASN CYS ALA MET GLN SEQRES 17 A 333 LEU VAL MET ARG PRO GLU ARG PHE ASP VAL ILE VAL THR SEQRES 18 A 333 THR ASN LEU LEU GLY ASP ILE LEU SER ASP LEU ALA ALA SEQRES 19 A 333 GLY LEU VAL GLY GLY LEU GLY LEU ALA PRO SER GLY ASN SEQRES 20 A 333 ILE GLY ASP THR THR ALA VAL PHE GLU PRO VAL HIS GLY SEQRES 21 A 333 SER ALA PRO ASP ILE ALA GLY LYS GLY ILE ALA ASN PRO SEQRES 22 A 333 THR ALA ALA ILE LEU SER ALA ALA MET MET LEU ASP TYR SEQRES 23 A 333 LEU GLY GLU LYS GLU ALA ALA LYS ARG VAL GLU LYS ALA SEQRES 24 A 333 VAL ASP LEU VAL LEU GLU ARG GLY PRO ARG THR PRO ASP SEQRES 25 A 333 LEU GLY GLY ASP ALA THR THR GLU ALA PHE THR GLU ALA SEQRES 26 A 333 VAL VAL GLU ALA LEU LYS SER LEU SEQRES 1 B 333 ALA TYR ARG ILE CYS LEU ILE GLU GLY ASP GLY ILE GLY SEQRES 2 B 333 HIS GLU VAL ILE PRO ALA ALA ARG ARG VAL LEU GLU ALA SEQRES 3 B 333 THR GLY LEU PRO LEU GLU PHE VAL GLU ALA GLU ALA GLY SEQRES 4 B 333 TRP GLU THR PHE GLU ARG ARG GLY THR SER VAL PRO GLU SEQRES 5 B 333 GLU THR VAL GLU LYS ILE LEU SER CYS HIS ALA THR LEU SEQRES 6 B 333 PHE GLY ALA ALA THR SER PRO THR ARG LYS VAL PRO GLY SEQRES 7 B 333 PHE PHE GLY ALA ILE ARG TYR LEU ARG ARG ARG LEU ASP SEQRES 8 B 333 LEU TYR ALA ASN VAL ARG PRO ALA LYS SER ARG PRO VAL SEQRES 9 B 333 PRO GLY SER ARG PRO GLY VAL ASP LEU VAL ILE VAL ARG SEQRES 10 B 333 GLU ASN THR GLU GLY LEU TYR VAL GLU GLN GLU ARG ARG SEQRES 11 B 333 TYR LEU ASP VAL ALA ILE ALA ASP ALA VAL ILE SER LYS SEQRES 12 B 333 LYS ALA SER GLU ARG ILE GLY ARG ALA ALA LEU ARG ILE SEQRES 13 B 333 ALA GLU GLY ARG PRO ARG LYS THR LEU HIS ILE ALA HIS SEQRES 14 B 333 LYS ALA ASN VAL LEU PRO LEU THR GLN GLY LEU PHE LEU SEQRES 15 B 333 ASP THR VAL LYS GLU VAL ALA LYS ASP PHE PRO LEU VAL SEQRES 16 B 333 ASN VAL GLN ASP ILE ILE VAL ASP ASN CYS ALA MET GLN SEQRES 17 B 333 LEU VAL MET ARG PRO GLU ARG PHE ASP VAL ILE VAL THR SEQRES 18 B 333 THR ASN LEU LEU GLY ASP ILE LEU SER ASP LEU ALA ALA SEQRES 19 B 333 GLY LEU VAL GLY GLY LEU GLY LEU ALA PRO SER GLY ASN SEQRES 20 B 333 ILE GLY ASP THR THR ALA VAL PHE GLU PRO VAL HIS GLY SEQRES 21 B 333 SER ALA PRO ASP ILE ALA GLY LYS GLY ILE ALA ASN PRO SEQRES 22 B 333 THR ALA ALA ILE LEU SER ALA ALA MET MET LEU ASP TYR SEQRES 23 B 333 LEU GLY GLU LYS GLU ALA ALA LYS ARG VAL GLU LYS ALA SEQRES 24 B 333 VAL ASP LEU VAL LEU GLU ARG GLY PRO ARG THR PRO ASP SEQRES 25 B 333 LEU GLY GLY ASP ALA THR THR GLU ALA PHE THR GLU ALA SEQRES 26 B 333 VAL VAL GLU ALA LEU LYS SER LEU FORMUL 3 HOH *378(H2 O) HELIX 1 1 ILE A 13 ALA A 27 1 15 HELIX 2 2 GLY A 40 GLY A 48 1 9 HELIX 3 3 PRO A 52 SER A 61 1 10 HELIX 4 4 GLY A 82 LEU A 91 1 10 HELIX 5 5 THR A 121 LEU A 124 5 4 HELIX 6 6 LYS A 144 GLY A 160 1 17 HELIX 7 7 LEU A 177 LYS A 191 1 15 HELIX 8 8 VAL A 203 ARG A 213 1 11 HELIX 9 9 PRO A 214 PHE A 217 5 4 HELIX 10 10 THR A 223 VAL A 238 1 16 HELIX 11 11 ALA A 263 ALA A 267 5 5 HELIX 12 12 PRO A 274 GLY A 289 1 16 HELIX 13 13 GLU A 290 GLY A 308 1 19 HELIX 14 14 THR A 311 GLY A 315 5 5 HELIX 15 15 THR A 319 SER A 333 1 15 HELIX 16 16 ILE B 13 THR B 28 1 16 HELIX 17 17 GLY B 40 GLY B 48 1 9 HELIX 18 18 PRO B 52 CYS B 62 1 11 HELIX 19 19 GLY B 82 ASP B 92 1 11 HELIX 20 20 THR B 121 LEU B 124 5 4 HELIX 21 21 LYS B 144 GLY B 160 1 17 HELIX 22 22 LEU B 177 LYS B 191 1 15 HELIX 23 23 VAL B 203 ARG B 213 1 11 HELIX 24 24 PRO B 214 PHE B 217 5 4 HELIX 25 25 THR B 223 VAL B 238 1 16 HELIX 26 26 GLY B 240 LEU B 243 5 4 HELIX 27 27 PRO B 274 GLY B 289 1 16 HELIX 28 28 GLU B 290 ARG B 307 1 18 HELIX 29 29 THR B 311 GLY B 315 5 5 HELIX 30 30 THR B 319 SER B 333 1 15 SHEET 1 A10 LEU A 32 ALA A 37 0 SHEET 2 A10 TYR A 3 GLY A 10 1 N TYR A 3 O GLU A 33 SHEET 3 A10 ALA A 64 ALA A 69 1 O LEU A 66 N CYS A 6 SHEET 4 A10 ALA A 254 PRO A 258 1 O PHE A 256 N PHE A 67 SHEET 5 A10 PRO A 245 ILE A 249 -1 N ASN A 248 O VAL A 255 SHEET 6 A10 ALA A 95 LYS A 101 -1 N VAL A 97 O GLY A 247 SHEET 7 A10 ASP A 113 GLU A 119 -1 O ILE A 116 N ARG A 98 SHEET 8 A10 VAL A 219 THR A 222 1 O ILE A 220 N VAL A 117 SHEET 9 A10 THR A 165 HIS A 170 1 N HIS A 167 O VAL A 221 SHEET 10 A10 ASN A 197 ILE A 202 1 O ILE A 201 N ILE A 168 SHEET 1 B 4 GLU A 129 TYR A 132 0 SHEET 2 B 4 VAL A 135 SER A 143 -1 O VAL A 135 N TYR A 132 SHEET 3 B 4 VAL B 135 SER B 143 -1 O ALA B 136 N ILE A 142 SHEET 4 B 4 GLU B 129 TYR B 132 -1 N ARG B 130 O ILE B 137 SHEET 1 C10 LEU B 32 ALA B 37 0 SHEET 2 C10 TYR B 3 GLY B 10 1 N ILE B 5 O GLU B 33 SHEET 3 C10 ALA B 64 ALA B 69 1 O LEU B 66 N CYS B 6 SHEET 4 C10 ALA B 254 PRO B 258 1 O PHE B 256 N PHE B 67 SHEET 5 C10 PRO B 245 ILE B 249 -1 N ASN B 248 O VAL B 255 SHEET 6 C10 ALA B 95 LYS B 101 -1 N ALA B 95 O ILE B 249 SHEET 7 C10 ASP B 113 GLU B 119 -1 O ARG B 118 N ASN B 96 SHEET 8 C10 VAL B 219 THR B 222 1 O ILE B 220 N VAL B 117 SHEET 9 C10 THR B 165 HIS B 170 1 N HIS B 167 O VAL B 221 SHEET 10 C10 ASN B 197 ILE B 202 1 O ASN B 197 N LEU B 166 CISPEP 1 GLY A 308 PRO A 309 0 0.24 CRYST1 60.963 143.243 177.846 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016403 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005623 0.00000 MASTER 404 0 0 30 24 0 0 6 0 0 0 52 END