HEADER HYDROLASE 04-FEB-05 1WY2 TITLE CRYSTAL STRUCTURE OF THE PROLIDASE FROM PYROCOCCUS HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROLIDASE, X-PRO DIPEPTIDASE, PROLINE DIPEPTIDASE, COMPND 5 IMIDODIPEPTIDASE; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS STRUCTURAL GENOMICS, PROLIDASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 2 INITIATIVE, RSGI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MIZUTANI,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 13-JUL-11 1WY2 1 VERSN REVDAT 2 24-FEB-09 1WY2 1 VERSN REVDAT 1 22-FEB-05 1WY2 0 JRNL AUTH H.MIZUTANI,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF THE PROLIDASE FROM PYROCOCCUS JRNL TITL 2 HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2017648.270 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 82825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4173 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12881 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 712 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 682 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.83000 REMARK 3 B22 (A**2) : -1.33000 REMARK 3 B33 (A**2) : 7.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.75 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.120 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.710 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.170 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.370 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 47.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CAC.PARAM REMARK 3 PARAMETER FILE 5 : GOL.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CAC.TOP REMARK 3 TOPOLOGY FILE 5 : GOL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB024138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82933 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.910 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.15 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : 0.34900 REMARK 200 FOR SHELL : 4.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1PV9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MAGNESIUM ACETATE, ZINC REMARK 280 CHLORIDE, CACODYLATE, PH 6.5, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.34850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.14550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.93800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.14550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.34850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.93800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER:CHAIN A AND B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -179.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ILE B 3 REMARK 465 MET B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 41 -156.35 -70.36 REMARK 500 GLU A 60 -15.33 -140.14 REMARK 500 HIS A 195 43.57 -107.03 REMARK 500 SER A 199 -168.29 -125.35 REMARK 500 HIS A 219 -12.26 79.84 REMARK 500 PHE A 281 79.49 -105.71 REMARK 500 ASN A 338 36.94 -145.39 REMARK 500 ALA B 41 -165.03 -71.87 REMARK 500 GLU B 50 15.96 -143.83 REMARK 500 LYS B 178 177.34 177.63 REMARK 500 SER B 199 -169.50 -123.48 REMARK 500 HIS B 219 -11.57 77.47 REMARK 500 LYS B 323 -51.52 73.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1573 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH A1703 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1744 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH A1746 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH B 616 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH B 719 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH B 737 DISTANCE = 6.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CAC A 403 O1 REMARK 620 2 ASP A 212 OD1 131.2 REMARK 620 3 ASP A 223 OD1 107.4 101.4 REMARK 620 4 GLU A 330 OE1 108.7 106.7 95.7 REMARK 620 5 ASP A 212 OD2 89.5 53.7 154.6 96.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CAC A 403 O1 REMARK 620 2 ASP A 223 OD2 88.8 REMARK 620 3 HIS A 287 NE2 128.4 88.4 REMARK 620 4 GLU A 316 OE2 110.9 157.2 88.0 REMARK 620 5 GLU A 330 OE2 104.9 85.6 126.2 78.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CAC B 404 O1 REMARK 620 2 ASP B 212 OD1 130.7 REMARK 620 3 ASP B 223 OD1 110.1 103.0 REMARK 620 4 GLU B 330 OE1 106.8 104.5 96.6 REMARK 620 5 ASP B 212 OD2 86.6 52.6 154.6 96.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CAC B 404 O1 REMARK 620 2 ASP B 223 OD2 91.1 REMARK 620 3 HIS B 287 NE2 128.6 86.6 REMARK 620 4 GLU B 316 OE2 107.3 157.9 91.1 REMARK 620 5 GLU B 330 OE2 102.1 85.3 128.7 79.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1409 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1424 O REMARK 620 2 HOH A1518 O 94.2 REMARK 620 3 HOH A1613 O 88.5 79.2 REMARK 620 4 HOH A1647 O 89.4 167.1 88.6 REMARK 620 5 HOH A1746 O 171.2 84.3 82.7 90.3 REMARK 620 6 HOH A1747 O 90.7 103.1 177.6 89.2 98.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001001149.1 RELATED DB: TARGETDB DBREF 1WY2 A 1 351 UNP O58885 PEPQ_PYRHO 1 351 DBREF 1WY2 B 1 351 UNP O58885 PEPQ_PYRHO 1 351 SEQRES 1 A 351 MET ASP ILE MET ASN GLU LYS VAL LYS LYS ILE ILE GLU SEQRES 2 A 351 PHE MET ASP LYS ASN SER ILE ASP ALA VAL LEU ILE ALA SEQRES 3 A 351 LYS ASN PRO ASN VAL TYR TYR ILE SER GLY ALA SER PRO SEQRES 4 A 351 LEU ALA GLY GLY TYR ILE LEU ILE THR GLY GLU SER ALA SEQRES 5 A 351 THR LEU TYR VAL PRO GLU LEU GLU TYR GLU MET ALA LYS SEQRES 6 A 351 GLU GLU SER ASN ILE PRO VAL GLU LYS PHE LYS LYS MET SEQRES 7 A 351 ASP GLU PHE TYR LYS ALA LEU GLU GLY ILE LYS SER LEU SEQRES 8 A 351 GLY ILE GLU SER SER LEU PRO TYR GLY PHE ILE GLU GLU SEQRES 9 A 351 LEU LYS LYS LYS ALA ASN ILE LYS GLU PHE LYS LYS VAL SEQRES 10 A 351 ASP ASP VAL ILE ARG ASP MET ARG ILE ILE LYS SER GLU SEQRES 11 A 351 LYS GLU ILE LYS ILE ILE GLU LYS ALA CYS GLU ILE ALA SEQRES 12 A 351 ASP LYS ALA VAL MET ALA ALA ILE GLU GLU ILE THR GLU SEQRES 13 A 351 GLY LYS LYS GLU ARG GLU VAL ALA ALA LYS VAL GLU TYR SEQRES 14 A 351 LEU MET LYS MET ASN GLY ALA GLU LYS PRO ALA PHE ASP SEQRES 15 A 351 THR ILE ILE ALA SER GLY TYR ARG SER ALA LEU PRO HIS SEQRES 16 A 351 GLY VAL ALA SER ASP LYS ARG ILE GLU ARG GLY ASP LEU SEQRES 17 A 351 VAL VAL ILE ASP LEU GLY ALA LEU TYR GLN HIS TYR ASN SEQRES 18 A 351 SER ASP ILE THR ARG THR ILE VAL VAL GLY SER PRO ASN SEQRES 19 A 351 GLU LYS GLN LYS GLU ILE TYR GLU ILE VAL LEU GLU ALA SEQRES 20 A 351 GLN LYS LYS ALA VAL GLU SER ALA LYS PRO GLY ILE THR SEQRES 21 A 351 ALA LYS GLU LEU ASP SER ILE ALA ARG ASN ILE ILE ALA SEQRES 22 A 351 GLU TYR GLY TYR GLY GLU TYR PHE ASN HIS SER LEU GLY SEQRES 23 A 351 HIS GLY VAL GLY LEU GLU VAL HIS GLU TRP PRO ARG VAL SEQRES 24 A 351 SER GLN TYR ASP GLU THR VAL LEU ARG GLU GLY MET VAL SEQRES 25 A 351 ILE THR ILE GLU PRO GLY ILE TYR ILE PRO LYS ILE GLY SEQRES 26 A 351 GLY VAL ARG ILE GLU ASP THR ILE LEU ILE THR LYS ASN SEQRES 27 A 351 GLY SER LYS ARG LEU THR LYS THR GLU ARG GLU LEU ILE SEQRES 1 B 351 MET ASP ILE MET ASN GLU LYS VAL LYS LYS ILE ILE GLU SEQRES 2 B 351 PHE MET ASP LYS ASN SER ILE ASP ALA VAL LEU ILE ALA SEQRES 3 B 351 LYS ASN PRO ASN VAL TYR TYR ILE SER GLY ALA SER PRO SEQRES 4 B 351 LEU ALA GLY GLY TYR ILE LEU ILE THR GLY GLU SER ALA SEQRES 5 B 351 THR LEU TYR VAL PRO GLU LEU GLU TYR GLU MET ALA LYS SEQRES 6 B 351 GLU GLU SER ASN ILE PRO VAL GLU LYS PHE LYS LYS MET SEQRES 7 B 351 ASP GLU PHE TYR LYS ALA LEU GLU GLY ILE LYS SER LEU SEQRES 8 B 351 GLY ILE GLU SER SER LEU PRO TYR GLY PHE ILE GLU GLU SEQRES 9 B 351 LEU LYS LYS LYS ALA ASN ILE LYS GLU PHE LYS LYS VAL SEQRES 10 B 351 ASP ASP VAL ILE ARG ASP MET ARG ILE ILE LYS SER GLU SEQRES 11 B 351 LYS GLU ILE LYS ILE ILE GLU LYS ALA CYS GLU ILE ALA SEQRES 12 B 351 ASP LYS ALA VAL MET ALA ALA ILE GLU GLU ILE THR GLU SEQRES 13 B 351 GLY LYS LYS GLU ARG GLU VAL ALA ALA LYS VAL GLU TYR SEQRES 14 B 351 LEU MET LYS MET ASN GLY ALA GLU LYS PRO ALA PHE ASP SEQRES 15 B 351 THR ILE ILE ALA SER GLY TYR ARG SER ALA LEU PRO HIS SEQRES 16 B 351 GLY VAL ALA SER ASP LYS ARG ILE GLU ARG GLY ASP LEU SEQRES 17 B 351 VAL VAL ILE ASP LEU GLY ALA LEU TYR GLN HIS TYR ASN SEQRES 18 B 351 SER ASP ILE THR ARG THR ILE VAL VAL GLY SER PRO ASN SEQRES 19 B 351 GLU LYS GLN LYS GLU ILE TYR GLU ILE VAL LEU GLU ALA SEQRES 20 B 351 GLN LYS LYS ALA VAL GLU SER ALA LYS PRO GLY ILE THR SEQRES 21 B 351 ALA LYS GLU LEU ASP SER ILE ALA ARG ASN ILE ILE ALA SEQRES 22 B 351 GLU TYR GLY TYR GLY GLU TYR PHE ASN HIS SER LEU GLY SEQRES 23 B 351 HIS GLY VAL GLY LEU GLU VAL HIS GLU TRP PRO ARG VAL SEQRES 24 B 351 SER GLN TYR ASP GLU THR VAL LEU ARG GLU GLY MET VAL SEQRES 25 B 351 ILE THR ILE GLU PRO GLY ILE TYR ILE PRO LYS ILE GLY SEQRES 26 B 351 GLY VAL ARG ILE GLU ASP THR ILE LEU ILE THR LYS ASN SEQRES 27 B 351 GLY SER LYS ARG LEU THR LYS THR GLU ARG GLU LEU ILE HET CAC A 403 5 HET CAC B 404 5 HET ZN A 405 1 HET ZN A 406 1 HET ZN B 407 1 HET ZN B 408 1 HET MG A1409 1 HET GOL A1401 6 HET GOL A1402 6 HETNAM CAC CACODYLATE ION HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN CAC DIMETHYLARSINATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CAC 2(C2 H6 AS O2 1-) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 MG MG 2+ FORMUL 10 GOL 2(C3 H8 O3) FORMUL 12 HOH *682(H2 O) HELIX 1 1 ASN A 5 ASN A 18 1 14 HELIX 2 2 LYS A 27 GLY A 36 1 10 HELIX 3 3 GLU A 58 SER A 68 1 11 HELIX 4 4 LYS A 77 GLU A 86 1 10 HELIX 5 5 PRO A 98 ALA A 109 1 12 HELIX 6 6 VAL A 117 ILE A 126 1 10 HELIX 7 7 SER A 129 ILE A 154 1 26 HELIX 8 8 LYS A 159 ASN A 174 1 16 HELIX 9 9 TYR A 189 LEU A 193 5 5 HELIX 10 10 ASN A 234 ALA A 255 1 22 HELIX 11 11 THR A 260 TYR A 275 1 16 HELIX 12 12 TYR A 277 PHE A 281 5 5 HELIX 13 13 ASN B 5 ASN B 18 1 14 HELIX 14 14 LYS B 27 GLY B 36 1 10 HELIX 15 15 GLU B 60 SER B 68 1 9 HELIX 16 16 LYS B 77 GLU B 86 1 10 HELIX 17 17 PRO B 98 ASN B 110 1 13 HELIX 18 18 VAL B 117 ILE B 126 1 10 HELIX 19 19 SER B 129 ILE B 154 1 26 HELIX 20 20 LYS B 159 ASN B 174 1 16 HELIX 21 21 TYR B 189 LEU B 193 5 5 HELIX 22 22 ASN B 234 ALA B 255 1 22 HELIX 23 23 THR B 260 TYR B 275 1 16 HELIX 24 24 TYR B 277 PHE B 281 5 5 SHEET 1 A 6 VAL A 72 PHE A 75 0 SHEET 2 A 6 SER A 51 PRO A 57 1 N LEU A 54 O GLU A 73 SHEET 3 A 6 TYR A 44 THR A 48 -1 N TYR A 44 O TYR A 55 SHEET 4 A 6 ALA A 22 ILE A 25 -1 N ILE A 25 O ILE A 45 SHEET 5 A 6 SER A 90 ILE A 93 1 O GLY A 92 N ALA A 22 SHEET 6 A 6 GLU A 113 LYS A 116 1 O GLU A 113 N LEU A 91 SHEET 1 B 3 LYS A 178 PRO A 179 0 SHEET 2 B 3 ALA A 215 TYR A 217 -1 O LEU A 216 N LYS A 178 SHEET 3 B 3 TYR A 220 ASN A 221 -1 O TYR A 220 N TYR A 217 SHEET 1 C 3 ILE A 184 SER A 187 0 SHEET 2 C 3 LEU A 208 LEU A 213 -1 O ASP A 212 N ILE A 184 SHEET 3 C 3 ILE A 224 VAL A 229 -1 O ILE A 228 N VAL A 209 SHEET 1 D 2 GLY A 286 GLY A 288 0 SHEET 2 D 2 GLU A 295 VAL A 299 -1 O VAL A 299 N GLY A 286 SHEET 1 E 3 VAL A 312 ILE A 315 0 SHEET 2 E 3 ASP A 331 THR A 336 -1 O ILE A 333 N ILE A 313 SHEET 3 E 3 GLY A 339 ARG A 342 -1 O LYS A 341 N LEU A 334 SHEET 1 F 2 GLY A 318 ILE A 321 0 SHEET 2 F 2 GLY A 325 ARG A 328 -1 O GLY A 325 N ILE A 321 SHEET 1 G 6 VAL B 72 PHE B 75 0 SHEET 2 G 6 ALA B 52 PRO B 57 1 N LEU B 54 O GLU B 73 SHEET 3 G 6 TYR B 44 ILE B 47 -1 N TYR B 44 O TYR B 55 SHEET 4 G 6 ALA B 22 ILE B 25 -1 N VAL B 23 O ILE B 47 SHEET 5 G 6 SER B 90 ILE B 93 1 O GLY B 92 N ALA B 22 SHEET 6 G 6 GLU B 113 LYS B 116 1 O GLU B 113 N LEU B 91 SHEET 1 H 3 LYS B 178 PRO B 179 0 SHEET 2 H 3 ALA B 215 TYR B 217 -1 O LEU B 216 N LYS B 178 SHEET 3 H 3 TYR B 220 ASN B 221 -1 O TYR B 220 N TYR B 217 SHEET 1 I 3 ILE B 184 SER B 187 0 SHEET 2 I 3 LEU B 208 LEU B 213 -1 O ASP B 212 N ILE B 184 SHEET 3 I 3 ILE B 224 VAL B 229 -1 O ARG B 226 N ILE B 211 SHEET 1 J 2 GLY B 286 GLY B 288 0 SHEET 2 J 2 GLU B 295 VAL B 299 -1 O VAL B 299 N GLY B 286 SHEET 1 K 3 VAL B 312 ILE B 315 0 SHEET 2 K 3 ASP B 331 ILE B 335 -1 O ILE B 333 N ILE B 313 SHEET 3 K 3 SER B 340 ARG B 342 -1 O LYS B 341 N LEU B 334 SHEET 1 L 2 GLY B 318 ILE B 321 0 SHEET 2 L 2 GLY B 325 ARG B 328 -1 O GLY B 325 N ILE B 321 LINK ZN ZN A 405 O1 CAC A 403 1555 1555 2.06 LINK ZN ZN A 405 OD1 ASP A 212 1555 1555 2.01 LINK ZN ZN A 405 OD1 ASP A 223 1555 1555 2.01 LINK ZN ZN A 405 OE1 GLU A 330 1555 1555 1.99 LINK ZN ZN A 406 O1 CAC A 403 1555 1555 2.07 LINK ZN ZN A 406 OD2 ASP A 223 1555 1555 2.13 LINK ZN ZN A 406 NE2 HIS A 287 1555 1555 2.09 LINK ZN ZN A 406 OE2 GLU A 316 1555 1555 2.24 LINK ZN ZN A 406 OE2 GLU A 330 1555 1555 2.08 LINK ZN ZN B 407 O1 CAC B 404 1555 1555 2.08 LINK ZN ZN B 407 OD1 ASP B 212 1555 1555 2.05 LINK ZN ZN B 407 OD1 ASP B 223 1555 1555 1.99 LINK ZN ZN B 407 OE1 GLU B 330 1555 1555 2.01 LINK ZN ZN B 408 O1 CAC B 404 1555 1555 2.12 LINK ZN ZN B 408 OD2 ASP B 223 1555 1555 2.14 LINK ZN ZN B 408 NE2 HIS B 287 1555 1555 2.14 LINK ZN ZN B 408 OE2 GLU B 316 1555 1555 2.11 LINK ZN ZN B 408 OE2 GLU B 330 1555 1555 2.07 LINK ZN ZN A 405 OD2 ASP A 212 1555 1555 2.67 LINK MG MG A1409 O HOH A1424 1555 1555 2.11 LINK MG MG A1409 O HOH A1518 1555 1555 2.17 LINK MG MG A1409 O HOH A1613 1555 1555 2.16 LINK MG MG A1409 O HOH A1647 1555 1555 2.10 LINK MG MG A1409 O HOH A1746 1555 1555 2.20 LINK MG MG A1409 O HOH A1747 1555 1555 2.11 LINK ZN ZN B 407 OD2 ASP B 212 1555 1555 2.71 CISPEP 1 TRP A 296 PRO A 297 0 -0.34 CISPEP 2 TRP B 296 PRO B 297 0 -0.27 SITE 1 AC1 9 PHE A 181 ASP A 212 ASP A 223 HIS A 294 SITE 2 AC1 9 GLU A 316 GLU A 330 ZN A 405 ZN A 406 SITE 3 AC1 9 HOH A1743 SITE 1 AC2 10 PHE B 181 ASP B 212 ASP B 223 VAL B 293 SITE 2 AC2 10 HIS B 294 GLU B 316 GLU B 330 ZN B 407 SITE 3 AC2 10 ZN B 408 HOH B 548 SITE 1 AC3 6 ASP A 212 ASP A 223 THR A 225 GLU A 330 SITE 2 AC3 6 CAC A 403 ZN A 406 SITE 1 AC4 6 ASP A 223 HIS A 287 GLU A 316 GLU A 330 SITE 2 AC4 6 CAC A 403 ZN A 405 SITE 1 AC5 6 ASP B 212 ASP B 223 THR B 225 GLU B 330 SITE 2 AC5 6 CAC B 404 ZN B 408 SITE 1 AC6 6 ASP B 223 HIS B 287 GLU B 316 GLU B 330 SITE 2 AC6 6 CAC B 404 ZN B 407 SITE 1 AC7 6 HOH A1424 HOH A1518 HOH A1613 HOH A1647 SITE 2 AC7 6 HOH A1746 HOH A1747 SITE 1 AC8 10 LYS A 27 ASN A 30 GLU A 94 SER A 95 SITE 2 AC8 10 SER A 96 ASP A 118 ARG A 125 TRP A 296 SITE 3 AC8 10 GOL A1402 HOH A1491 SITE 1 AC9 6 LYS A 27 ARG A 125 GLU A 292 TRP A 296 SITE 2 AC9 6 GOL A1401 HOH A1717 CRYST1 66.697 105.876 106.291 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009408 0.00000 MASTER 379 0 9 24 38 0 21 6 0 0 0 54 END