HEADER LIGASE 25-JUN-04 1WLE TITLE CRYSTAL STRUCTURE OF MAMMALIAN MITOCHONDRIAL SERYL-TRNA TITLE 2 SYNTHETASE COMPLEXED WITH SERYL-ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MITOCHONDRIAL SERYL-TRNA SYNTHETASE, SERINE--TRNA COMPND 5 LIGASE, SERRSMT; COMPND 6 EC: 6.1.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: SERRSMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA (NOVAGEN); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHIMNARONK,M.G.JEPPESEN,T.SUZUKI,J.NYBORG,K.WATANABE REVDAT 3 24-FEB-09 1WLE 1 VERSN REVDAT 2 24-JAN-06 1WLE 1 JRNL REVDAT 1 06-SEP-05 1WLE 0 JRNL AUTH S.CHIMNARONK,M.G.JEPPESEN,T.SUZUKI,J.NYBORG, JRNL AUTH 2 K.WATANABE JRNL TITL DUAL-MODE RECOGNITION OF NONCANONICAL TRNAS(SER) JRNL TITL 2 BY SERYL-TRNA SYNTHETASE IN MAMMALIAN MITOCHONDRIA JRNL REF EMBO J. V. 24 3369 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16163389 JRNL DOI 10.1038/SJ.EMBOJ.7600811 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.YOKOGAWA,N.SHIMADA,N.TAKEUCHI,L.BENKOWSKI, REMARK 1 AUTH 2 T.SUZUKI,A.OMORI,T.UEDA,K.NISHIKAWA,L.L.SPREMULLI, REMARK 1 AUTH 3 K.WATANABE REMARK 1 TITL CHARACTERIZATION AND TRNA RECOGNITION OF MAMMALIAN REMARK 1 TITL 2 MITOCHONDRIAL SERYL-TRNA SYNTHETASE REMARK 1 REF J.BIOL.CHEM. V. 275 19913 2000 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 10764807 REMARK 1 DOI 10.1074/JBC.M908473199 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.SHIMADA,T.SUZUKI,K.WATANABE REMARK 1 TITL DUAL MODE RECOGNITION OF TWO ISOACCEPTOR TRNAS BY REMARK 1 TITL 2 MAMMALIAN MITOCHONDRIAL SERYL-TRNA SYNTHETASE REMARK 1 REF J.BIOL.CHEM. V. 276 46770 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11577083 REMARK 1 DOI 10.1074/JBC.M105150200 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.CHIMNARONK,M.G.JEPPESEN,N.SHIMADA,T.SUZUKI, REMARK 1 AUTH 2 J.NYBORG,K.WATANABE REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION REMARK 1 TITL 2 STUDY OF MAMMALIAN MITOCHONDRIAL SERYL-TRNA REMARK 1 TITL 3 SYNTHETASE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 1319 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15213404 REMARK 1 DOI 10.1107/S0907444904011217 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 144630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 14531 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 0.93 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12400 REMARK 3 BIN R VALUE (WORKING SET) : 0.2777 REMARK 3 BIN FREE R VALUE : 0.2895 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.53 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1420 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7437 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.42100 REMARK 3 B22 (A**2) : -2.23300 REMARK 3 B33 (A**2) : 3.65400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.35 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.12 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.82 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.169 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.844 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.819 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.756 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : THROUGHOUT REMARK 3 KSOL : 0.48 REMARK 3 BSOL : 63.34 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : SMP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : SMP.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WLE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : TRIANGULAR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1SRY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, LITHIUM SULFATE, MES- REMARK 280 NAOH, DTT, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.93200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 115.17500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.93200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 115.17500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.79500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.93200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 115.17500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.79500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.93200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 115.17500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER FOUND IN THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 ARG A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 GLU A 20 REMARK 465 ARG A 21 REMARK 465 GLN A 22 REMARK 465 ASP A 23 REMARK 465 LYS A 320 REMARK 465 GLU A 321 REMARK 465 LYS A 491 REMARK 465 PRO A 492 REMARK 465 ARG A 493 REMARK 465 LEU A 494 REMARK 465 PRO A 495 REMARK 465 GLY A 496 REMARK 465 GLN A 497 REMARK 465 PRO A 498 REMARK 465 ALA A 499 REMARK 465 SER A 500 REMARK 465 SER A 501 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 LEU B 12 REMARK 465 VAL B 13 REMARK 465 PRO B 14 REMARK 465 ARG B 15 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 ALA B 18 REMARK 465 THR B 19 REMARK 465 GLU B 20 REMARK 465 ARG B 21 REMARK 465 LYS B 491 REMARK 465 PRO B 492 REMARK 465 ARG B 493 REMARK 465 LEU B 494 REMARK 465 PRO B 495 REMARK 465 GLY B 496 REMARK 465 GLN B 497 REMARK 465 PRO B 498 REMARK 465 ALA B 499 REMARK 465 SER B 500 REMARK 465 SER B 501 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 261 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 PRO B 263 C - N - CA ANGL. DEV. = -25.5 DEGREES REMARK 500 PRO B 263 C - N - CD ANGL. DEV. = 23.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 262 -72.21 -30.58 REMARK 500 ASP A 270 109.47 -41.88 REMARK 500 ASP A 276 66.11 39.71 REMARK 500 GLU A 315 49.44 39.34 REMARK 500 THR A 318 -165.07 -165.46 REMARK 500 THR A 409 -123.80 39.48 REMARK 500 LEU B 103 69.09 -119.56 REMARK 500 ASP B 108 45.19 -92.01 REMARK 500 SER B 110 13.09 -167.94 REMARK 500 GLN B 114 13.72 -148.60 REMARK 500 SER B 120 -18.15 82.08 REMARK 500 ARG B 122 -28.28 -149.54 REMARK 500 ARG B 210 -12.74 72.63 REMARK 500 ASN B 260 88.87 -157.39 REMARK 500 ALA B 261 -155.03 -98.26 REMARK 500 LYS B 262 -66.53 -90.59 REMARK 500 ASP B 270 108.10 -43.59 REMARK 500 ASP B 276 65.27 38.66 REMARK 500 ASP B 317 6.48 55.91 REMARK 500 THR B 409 -125.02 34.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRP A 900 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRP B 901 DBREF 1WLE A 18 501 UNP Q9N0F3 SYSM_BOVIN 35 518 DBREF 1WLE B 18 501 UNP Q9N0F3 SYSM_BOVIN 35 518 SEQADV 1WLE MET A 1 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY A 2 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 3 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 4 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 5 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 6 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 7 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 8 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER A 9 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER A 10 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY A 11 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE LEU A 12 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE VAL A 13 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE PRO A 14 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE ARG A 15 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY A 16 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER A 17 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE MET B 1 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY B 2 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 3 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 4 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 5 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 6 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 7 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 8 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER B 9 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER B 10 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY B 11 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE LEU B 12 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE VAL B 13 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE PRO B 14 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE ARG B 15 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY B 16 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER B 17 UNP Q9N0F3 EXPRESSION TAG SEQRES 1 A 501 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL SEQRES 2 A 501 PRO ARG GLY SER ALA THR GLU ARG GLN ASP ARG ASN LEU SEQRES 3 A 501 LEU TYR GLU HIS ALA ARG GLU GLY TYR SER ALA LEU PRO SEQRES 4 A 501 LEU LEU ASP MET GLU SER LEU CYS ALA TYR PRO GLU ASP SEQRES 5 A 501 ALA ALA ARG ALA LEU ASP LEU ARG LYS GLY GLU LEU ARG SEQRES 6 A 501 SER LYS ASP LEU PRO GLY ILE ILE SER THR TRP GLN GLU SEQRES 7 A 501 LEU ARG GLN LEU ARG GLU GLN ILE ARG SER LEU GLU GLU SEQRES 8 A 501 GLU LYS GLU ALA VAL THR GLU ALA VAL ARG ALA LEU VAL SEQRES 9 A 501 VAL ASN GLN ASP ASN SER GLN VAL GLN GLN ASP PRO GLN SEQRES 10 A 501 TYR GLN SER LEU ARG ALA ARG GLY ARG GLU ILE ARG LYS SEQRES 11 A 501 GLN LEU THR LEU LEU TYR PRO LYS GLU ALA GLN LEU GLU SEQRES 12 A 501 GLU GLN PHE TYR LEU ARG ALA LEU ARG LEU PRO ASN GLN SEQRES 13 A 501 THR HIS PRO ASP VAL PRO VAL GLY ASP GLU SER GLN ALA SEQRES 14 A 501 ARG VAL LEU HIS VAL VAL GLY ASP LYS PRO ALA PHE SER SEQRES 15 A 501 PHE GLN PRO ARG GLY HIS LEU GLU ILE ALA GLU LYS LEU SEQRES 16 A 501 ASP ILE ILE ARG GLN LYS ARG LEU SER HIS VAL SER GLY SEQRES 17 A 501 HIS ARG SER TYR TYR LEU ARG GLY ALA GLY ALA LEU LEU SEQRES 18 A 501 GLN HIS GLY LEU VAL ASN PHE THR LEU ASN LYS LEU ILE SEQRES 19 A 501 HIS ARG GLY PHE THR PRO MET THR VAL PRO ASP LEU LEU SEQRES 20 A 501 ARG GLY VAL VAL PHE GLU GLY CYS GLY MET THR PRO ASN SEQRES 21 A 501 ALA LYS PRO SER GLN ILE TYR ASN ILE ASP PRO SER ARG SEQRES 22 A 501 PHE GLU ASP LEU ASN LEU ALA GLY THR ALA GLU VAL GLY SEQRES 23 A 501 LEU ALA GLY TYR PHE MET ASP HIS SER VAL ALA PHE ARG SEQRES 24 A 501 ASP LEU PRO ILE ARG MET VAL CYS SER SER THR CYS TYR SEQRES 25 A 501 ARG ALA GLU THR ASP THR GLY LYS GLU PRO TRP GLY LEU SEQRES 26 A 501 TYR ARG VAL HIS HIS PHE THR LYS VAL GLU MET PHE GLY SEQRES 27 A 501 VAL THR GLY PRO GLY LEU GLU GLN SER SER GLU LEU LEU SEQRES 28 A 501 GLU GLU PHE LEU SER LEU GLN MET GLU ILE LEU THR GLU SEQRES 29 A 501 LEU GLY LEU HIS PHE ARG VAL LEU ASP MET PRO THR GLN SEQRES 30 A 501 GLU LEU GLY LEU PRO ALA TYR ARG LYS PHE ASP ILE GLU SEQRES 31 A 501 ALA TRP MET PRO GLY ARG GLY ARG PHE GLY GLU VAL THR SEQRES 32 A 501 SER ALA SER ASN CYS THR ASP PHE GLN SER ARG ARG LEU SEQRES 33 A 501 HIS ILE MET PHE GLN THR GLU ALA GLY GLU LEU GLN PHE SEQRES 34 A 501 ALA HIS THR VAL ASN ALA THR GLY CYS ALA VAL PRO ARG SEQRES 35 A 501 LEU LEU ILE ALA LEU LEU GLU SER TYR GLN GLN LYS ASP SEQRES 36 A 501 GLY SER VAL LEU VAL PRO PRO ALA LEU GLN PRO TYR LEU SEQRES 37 A 501 GLY THR ASP ARG ILE THR THR PRO THR HIS VAL PRO LEU SEQRES 38 A 501 GLN TYR ILE GLY PRO ASN GLN PRO GLN LYS PRO ARG LEU SEQRES 39 A 501 PRO GLY GLN PRO ALA SER SER SEQRES 1 B 501 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL SEQRES 2 B 501 PRO ARG GLY SER ALA THR GLU ARG GLN ASP ARG ASN LEU SEQRES 3 B 501 LEU TYR GLU HIS ALA ARG GLU GLY TYR SER ALA LEU PRO SEQRES 4 B 501 LEU LEU ASP MET GLU SER LEU CYS ALA TYR PRO GLU ASP SEQRES 5 B 501 ALA ALA ARG ALA LEU ASP LEU ARG LYS GLY GLU LEU ARG SEQRES 6 B 501 SER LYS ASP LEU PRO GLY ILE ILE SER THR TRP GLN GLU SEQRES 7 B 501 LEU ARG GLN LEU ARG GLU GLN ILE ARG SER LEU GLU GLU SEQRES 8 B 501 GLU LYS GLU ALA VAL THR GLU ALA VAL ARG ALA LEU VAL SEQRES 9 B 501 VAL ASN GLN ASP ASN SER GLN VAL GLN GLN ASP PRO GLN SEQRES 10 B 501 TYR GLN SER LEU ARG ALA ARG GLY ARG GLU ILE ARG LYS SEQRES 11 B 501 GLN LEU THR LEU LEU TYR PRO LYS GLU ALA GLN LEU GLU SEQRES 12 B 501 GLU GLN PHE TYR LEU ARG ALA LEU ARG LEU PRO ASN GLN SEQRES 13 B 501 THR HIS PRO ASP VAL PRO VAL GLY ASP GLU SER GLN ALA SEQRES 14 B 501 ARG VAL LEU HIS VAL VAL GLY ASP LYS PRO ALA PHE SER SEQRES 15 B 501 PHE GLN PRO ARG GLY HIS LEU GLU ILE ALA GLU LYS LEU SEQRES 16 B 501 ASP ILE ILE ARG GLN LYS ARG LEU SER HIS VAL SER GLY SEQRES 17 B 501 HIS ARG SER TYR TYR LEU ARG GLY ALA GLY ALA LEU LEU SEQRES 18 B 501 GLN HIS GLY LEU VAL ASN PHE THR LEU ASN LYS LEU ILE SEQRES 19 B 501 HIS ARG GLY PHE THR PRO MET THR VAL PRO ASP LEU LEU SEQRES 20 B 501 ARG GLY VAL VAL PHE GLU GLY CYS GLY MET THR PRO ASN SEQRES 21 B 501 ALA LYS PRO SER GLN ILE TYR ASN ILE ASP PRO SER ARG SEQRES 22 B 501 PHE GLU ASP LEU ASN LEU ALA GLY THR ALA GLU VAL GLY SEQRES 23 B 501 LEU ALA GLY TYR PHE MET ASP HIS SER VAL ALA PHE ARG SEQRES 24 B 501 ASP LEU PRO ILE ARG MET VAL CYS SER SER THR CYS TYR SEQRES 25 B 501 ARG ALA GLU THR ASP THR GLY LYS GLU PRO TRP GLY LEU SEQRES 26 B 501 TYR ARG VAL HIS HIS PHE THR LYS VAL GLU MET PHE GLY SEQRES 27 B 501 VAL THR GLY PRO GLY LEU GLU GLN SER SER GLU LEU LEU SEQRES 28 B 501 GLU GLU PHE LEU SER LEU GLN MET GLU ILE LEU THR GLU SEQRES 29 B 501 LEU GLY LEU HIS PHE ARG VAL LEU ASP MET PRO THR GLN SEQRES 30 B 501 GLU LEU GLY LEU PRO ALA TYR ARG LYS PHE ASP ILE GLU SEQRES 31 B 501 ALA TRP MET PRO GLY ARG GLY ARG PHE GLY GLU VAL THR SEQRES 32 B 501 SER ALA SER ASN CYS THR ASP PHE GLN SER ARG ARG LEU SEQRES 33 B 501 HIS ILE MET PHE GLN THR GLU ALA GLY GLU LEU GLN PHE SEQRES 34 B 501 ALA HIS THR VAL ASN ALA THR GLY CYS ALA VAL PRO ARG SEQRES 35 B 501 LEU LEU ILE ALA LEU LEU GLU SER TYR GLN GLN LYS ASP SEQRES 36 B 501 GLY SER VAL LEU VAL PRO PRO ALA LEU GLN PRO TYR LEU SEQRES 37 B 501 GLY THR ASP ARG ILE THR THR PRO THR HIS VAL PRO LEU SEQRES 38 B 501 GLN TYR ILE GLY PRO ASN GLN PRO GLN LYS PRO ARG LEU SEQRES 39 B 501 PRO GLY GLN PRO ALA SER SER HET SRP A 900 29 HET SRP B 901 29 HETNAM SRP SERYL ADENYLATE FORMUL 3 SRP 2(C13 H19 N6 O9 P) FORMUL 5 HOH *611(H2 O) HELIX 1 1 ASN A 25 GLU A 33 1 9 HELIX 2 2 ASP A 42 TYR A 49 1 8 HELIX 3 3 TYR A 49 LYS A 61 1 13 HELIX 4 4 ARG A 65 LYS A 67 5 3 HELIX 5 5 ASP A 68 ASP A 108 1 41 HELIX 6 6 GLN A 111 GLN A 114 5 4 HELIX 7 7 ASP A 115 LEU A 151 1 37 HELIX 8 8 ASP A 165 ALA A 169 5 5 HELIX 9 9 GLY A 187 LEU A 195 1 9 HELIX 10 10 GLY A 216 ARG A 236 1 21 HELIX 11 11 ARG A 248 GLY A 256 1 9 HELIX 12 12 THR A 282 MET A 292 1 11 HELIX 13 13 ARG A 299 LEU A 301 5 3 HELIX 14 14 GLY A 343 LEU A 365 1 23 HELIX 15 15 PRO A 375 LEU A 379 5 5 HELIX 16 16 ASP A 410 HIS A 417 1 8 HELIX 17 17 VAL A 440 GLN A 452 1 13 HELIX 18 18 PRO A 461 ALA A 463 5 3 HELIX 19 19 LEU A 464 GLY A 469 1 6 HELIX 20 20 ASN B 25 GLU B 33 1 9 HELIX 21 21 ASP B 42 TYR B 49 1 8 HELIX 22 22 TYR B 49 LYS B 61 1 13 HELIX 23 23 ARG B 65 LYS B 67 5 3 HELIX 24 24 ASP B 68 THR B 97 1 30 HELIX 25 25 THR B 97 ALA B 102 1 6 HELIX 26 26 GLN B 111 ASP B 115 5 5 HELIX 27 27 GLY B 125 LEU B 151 1 27 HELIX 28 28 ASP B 165 ALA B 169 5 5 HELIX 29 29 GLY B 187 LEU B 195 1 9 HELIX 30 30 GLY B 216 ARG B 236 1 21 HELIX 31 31 ARG B 248 GLY B 256 1 9 HELIX 32 32 THR B 282 MET B 292 1 11 HELIX 33 33 ARG B 299 LEU B 301 5 3 HELIX 34 34 GLY B 343 LEU B 365 1 23 HELIX 35 35 PRO B 375 LEU B 379 5 5 HELIX 36 36 ASP B 410 HIS B 417 1 8 HELIX 37 37 VAL B 440 GLN B 452 1 13 HELIX 38 38 PRO B 461 ALA B 463 5 3 HELIX 39 39 LEU B 464 GLY B 469 1 6 SHEET 1 A10 ARG A 170 VAL A 175 0 SHEET 2 A10 PHE A 369 ASP A 373 -1 O VAL A 371 N HIS A 173 SHEET 3 A10 ARG A 385 MET A 393 -1 O ASP A 388 N LEU A 372 SHEET 4 A10 ARG A 398 ASN A 407 -1 O VAL A 402 N ILE A 389 SHEET 5 A10 HIS A 431 ALA A 439 -1 O ASN A 434 N SER A 406 SHEET 6 A10 HIS A 330 THR A 340 -1 N GLY A 338 O VAL A 433 SHEET 7 A10 ILE A 303 TYR A 312 -1 N CYS A 311 O PHE A 331 SHEET 8 A10 THR A 239 THR A 242 1 N THR A 239 O ARG A 304 SHEET 9 A10 TYR B 213 ARG B 215 -1 O LEU B 214 N THR A 242 SHEET 10 A10 ILE B 198 ARG B 199 -1 N ARG B 199 O TYR B 213 SHEET 1 B10 ILE A 198 ARG A 199 0 SHEET 2 B10 TYR A 213 ARG A 215 -1 O TYR A 213 N ARG A 199 SHEET 3 B10 THR B 239 THR B 242 -1 O THR B 242 N LEU A 214 SHEET 4 B10 ILE B 303 TYR B 312 1 O ARG B 304 N THR B 239 SHEET 5 B10 HIS B 330 THR B 340 -1 O PHE B 331 N CYS B 311 SHEET 6 B10 HIS B 431 ALA B 439 -1 O VAL B 433 N GLY B 338 SHEET 7 B10 ARG B 398 ASN B 407 -1 N SER B 406 O ASN B 434 SHEET 8 B10 ARG B 385 MET B 393 -1 N ILE B 389 O VAL B 402 SHEET 9 B10 PHE B 369 ASP B 373 -1 N LEU B 372 O ASP B 388 SHEET 10 B10 ARG B 170 VAL B 175 -1 N VAL B 175 O PHE B 369 SHEET 1 C 2 LEU A 246 LEU A 247 0 SHEET 2 C 2 ASN A 278 LEU A 279 -1 O ASN A 278 N LEU A 247 SHEET 1 D 4 LEU A 427 PHE A 429 0 SHEET 2 D 4 MET A 419 GLN A 421 -1 N PHE A 420 O GLN A 428 SHEET 3 D 4 HIS A 294 ALA A 297 1 N VAL A 296 O GLN A 421 SHEET 4 D 4 GLN B 482 TYR B 483 -1 O GLN B 482 N SER A 295 SHEET 1 E 2 VAL A 458 LEU A 459 0 SHEET 2 E 2 ARG A 472 ILE A 473 -1 O ILE A 473 N VAL A 458 SHEET 1 F 4 GLN A 482 TYR A 483 0 SHEET 2 F 4 HIS B 294 ALA B 297 -1 O SER B 295 N GLN A 482 SHEET 3 F 4 MET B 419 GLN B 421 1 O GLN B 421 N VAL B 296 SHEET 4 F 4 LEU B 427 PHE B 429 -1 O GLN B 428 N PHE B 420 SHEET 1 G 2 LEU B 246 LEU B 247 0 SHEET 2 G 2 ASN B 278 LEU B 279 -1 O ASN B 278 N LEU B 247 SHEET 1 H 2 VAL B 458 LEU B 459 0 SHEET 2 H 2 ARG B 472 ILE B 473 -1 O ILE B 473 N VAL B 458 CISPEP 1 LEU A 301 PRO A 302 0 -0.02 CISPEP 2 LEU B 301 PRO B 302 0 -0.38 SITE 1 AC1 20 THR A 282 GLU A 284 ARG A 313 GLU A 315 SITE 2 AC1 20 TYR A 326 ARG A 327 VAL A 328 PHE A 331 SITE 3 AC1 20 GLU A 335 GLU A 401 VAL A 402 THR A 403 SITE 4 AC1 20 SER A 404 ASN A 434 THR A 436 ALA A 439 SITE 5 AC1 20 HOH A 902 HOH A 954 HOH A1040 HOH A1134 SITE 1 AC2 18 THR B 282 GLU B 284 ARG B 313 GLU B 315 SITE 2 AC2 18 TYR B 326 ARG B 327 VAL B 328 PHE B 331 SITE 3 AC2 18 GLU B 335 GLU B 401 VAL B 402 THR B 403 SITE 4 AC2 18 SER B 404 ASN B 434 THR B 436 ALA B 439 SITE 5 AC2 18 HOH B 905 HOH B1014 CRYST1 79.864 230.350 135.590 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012521 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007375 0.00000 MASTER 404 0 2 39 36 0 10 6 0 0 0 78 END