HEADER HYDROLASE 21-JUN-04 1WL6 TITLE MG-SUBSTITUTED FORM OF E. COLI AMINOPEPTIDASE P COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: X-PRO AMINOPEPTIDASE, AMINOPEPTIDASE P II, APP-II, COMPND 5 AMINOACYLPROLINE AMINOPEPTIDASE; COMPND 6 EC: 3.4.11.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PEPP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AN1459; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPL670 KEYWDS PROLINE-SPECIFIC PEPTIDASE, METALLOENZYME, PITA-BREAD FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.GRAHAM,C.S.BOND,H.C.FREEMAN,J.M.GUSS REVDAT 5 13-JUL-11 1WL6 1 VERSN REVDAT 4 24-FEB-09 1WL6 1 VERSN REVDAT 3 24-JAN-06 1WL6 1 JRNL REVDAT 2 30-AUG-05 1WL6 1 JRNL REVDAT 1 16-AUG-05 1WL6 0 JRNL AUTH S.C.GRAHAM,C.S.BOND,H.C.FREEMAN,J.M.GUSS JRNL TITL STRUCTURAL AND FUNCTIONAL IMPLICATIONS OF METAL ION JRNL TITL 2 SELECTION IN AMINOPEPTIDASE P, A METALLOPROTEASE WITH A JRNL TITL 3 DINUCLEAR METAL CENTER JRNL REF BIOCHEMISTRY V. 44 13820 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16229471 JRNL DOI 10.1021/BI0512849 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 54464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1708 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2599 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 599 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.169 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3626 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3319 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4897 ; 1.296 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7631 ; 0.797 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 6.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;37.765 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 615 ;12.207 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.015 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4046 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 752 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 760 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3396 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1745 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2183 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 451 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.282 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 92 ; 0.283 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2854 ; 2.371 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 898 ; 0.570 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3525 ; 2.695 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1644 ; 2.530 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1372 ; 3.878 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): 64.9050 58.4880 49.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.0097 T22: 0.0350 REMARK 3 T33: 0.0292 T12: 0.0092 REMARK 3 T13: 0.0066 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.2427 L22: 0.4484 REMARK 3 L33: 0.4160 L12: -0.1656 REMARK 3 L13: 0.0548 L23: -0.1019 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.0329 S13: -0.0046 REMARK 3 S21: 0.0076 S22: -0.0245 S23: 0.0199 REMARK 3 S31: 0.0512 S32: 0.0011 S33: 0.0460 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1WL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56174 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 42.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NATIVE AMINOPEPTIDASE P WITHOUT HETATOMS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, PEG 4000, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.16133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.32267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.16133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.32267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.16133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 64.32267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.16133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.32267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMOTETRAMER GENERATED BY THE REMARK 300 OPERATORS: (X,Y,Z), (1-X,1-Y,Z), (Y,X,4/3-Z), (1-Y,1-X,4/3-Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 88.86650 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 153.92129 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 128.64533 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 88.86650 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 153.92129 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 128.64533 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 88.86650 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 153.92129 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 128.64533 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1176 O HOH A 1497 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 37 -120.60 50.39 REMARK 500 THR A 53 -36.32 -137.95 REMARK 500 ASP A 68 -167.97 -165.02 REMARK 500 LYS A 425 -21.10 -140.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 976 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A1159 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH A1198 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH A1225 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1256 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1257 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A1264 DISTANCE = 8.17 ANGSTROMS REMARK 525 HOH A1267 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH A1290 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH A1322 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A1335 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH A1339 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH A1371 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1374 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1392 DISTANCE = 5.32 ANGSTROMS REMARK 525 HOH A1400 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH A1405 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1408 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1446 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A1492 DISTANCE = 6.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 383 OE1 REMARK 620 2 GLU A 383 OE2 44.8 REMARK 620 3 HOH A 904 O 50.7 92.2 REMARK 620 4 HIS A 354 NE2 128.6 84.9 148.1 REMARK 620 5 HOH A1083 O 94.0 94.7 70.6 77.9 REMARK 620 6 GLU A 406 OE2 68.5 81.4 88.7 122.0 158.9 REMARK 620 7 ASP A 271 OD2 142.1 160.7 102.7 88.6 101.7 86.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1245 O REMARK 620 2 GLU A 406 OE1 170.1 REMARK 620 3 ASP A 260 OD1 86.7 103.0 REMARK 620 4 ASP A 260 OD2 87.2 99.1 60.4 REMARK 620 5 ASP A 271 OD1 91.2 87.0 89.9 150.3 REMARK 620 6 HOH A 904 O 84.1 87.8 153.0 93.7 115.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AZ9 RELATED DB: PDB REMARK 900 NATIVE (MN-SUBSTITUTED) STRUCTURE. DBREF 1WL6 A 1 440 UNP P15034 AMPP_ECOLI 1 440 SEQRES 1 A 440 SER GLU ILE SER ARG GLN GLU PHE GLN ARG ARG ARG GLN SEQRES 2 A 440 ALA LEU VAL GLU GLN MET GLN PRO GLY SER ALA ALA LEU SEQRES 3 A 440 ILE PHE ALA ALA PRO GLU VAL THR ARG SER ALA ASP SER SEQRES 4 A 440 GLU TYR PRO TYR ARG GLN ASN SER ASP PHE TRP TYR PHE SEQRES 5 A 440 THR GLY PHE ASN GLU PRO GLU ALA VAL LEU VAL LEU ILE SEQRES 6 A 440 LYS SER ASP ASP THR HIS ASN HIS SER VAL LEU PHE ASN SEQRES 7 A 440 ARG VAL ARG ASP LEU THR ALA GLU ILE TRP PHE GLY ARG SEQRES 8 A 440 ARG LEU GLY GLN ASP ALA ALA PRO GLU LYS LEU GLY VAL SEQRES 9 A 440 ASP ARG ALA LEU ALA PHE SER GLU ILE ASN GLN GLN LEU SEQRES 10 A 440 TYR GLN LEU LEU ASN GLY LEU ASP VAL VAL TYR HIS ALA SEQRES 11 A 440 GLN GLY GLU TYR ALA TYR ALA ASP VAL ILE VAL ASN SER SEQRES 12 A 440 ALA LEU GLU LYS LEU ARG LYS GLY SER ARG GLN ASN LEU SEQRES 13 A 440 THR ALA PRO ALA THR MET ILE ASP TRP ARG PRO VAL VAL SEQRES 14 A 440 HIS GLU MET ARG LEU PHE LYS SER PRO GLU GLU ILE ALA SEQRES 15 A 440 VAL LEU ARG ARG ALA GLY GLU ILE THR ALA MET ALA HIS SEQRES 16 A 440 THR ARG ALA MET GLU LYS CYS ARG PRO GLY MET PHE GLU SEQRES 17 A 440 TYR HIS LEU GLU GLY GLU ILE HIS HIS GLU PHE ASN ARG SEQRES 18 A 440 HIS GLY ALA ARG TYR PRO SER TYR ASN THR ILE VAL GLY SEQRES 19 A 440 SER GLY GLU ASN GLY CYS ILE LEU HIS TYR THR GLU ASN SEQRES 20 A 440 GLU CYS GLU MET ARG ASP GLY ASP LEU VAL LEU ILE ASP SEQRES 21 A 440 ALA GLY CYS GLU TYR LYS GLY TYR ALA GLY ASP ILE THR SEQRES 22 A 440 ARG THR PHE PRO VAL ASN GLY LYS PHE THR GLN ALA GLN SEQRES 23 A 440 ARG GLU ILE TYR ASP ILE VAL LEU GLU SER LEU GLU THR SEQRES 24 A 440 SER LEU ARG LEU TYR ARG PRO GLY THR SER ILE LEU GLU SEQRES 25 A 440 VAL THR GLY GLU VAL VAL ARG ILE MET VAL SER GLY LEU SEQRES 26 A 440 VAL LYS LEU GLY ILE LEU LYS GLY ASP VAL ASP GLU LEU SEQRES 27 A 440 ILE ALA GLN ASN ALA HIS ARG PRO PHE PHE MET HIS GLY SEQRES 28 A 440 LEU SER HIS TRP LEU GLY LEU ASP VAL HIS ASP VAL GLY SEQRES 29 A 440 VAL TYR GLY GLN ASP ARG SER ARG ILE LEU GLU PRO GLY SEQRES 30 A 440 MET VAL LEU THR VAL GLU PRO GLY LEU TYR ILE ALA PRO SEQRES 31 A 440 ASP ALA GLU VAL PRO GLU GLN TYR ARG GLY ILE GLY ILE SEQRES 32 A 440 ARG ILE GLU ASP ASP ILE VAL ILE THR GLU THR GLY ASN SEQRES 33 A 440 GLU ASN LEU THR ALA SER VAL VAL LYS LYS PRO GLU GLU SEQRES 34 A 440 ILE GLU ALA LEU MET VAL ALA ALA ARG LYS GLN HET MG A 801 1 HET MG A 802 1 HET CL A 803 1 HET CL A 804 1 HET XPE A 901 31 HET IPA A 902 4 HET IPA A 903 4 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM XPE 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL HETNAM IPA ISOPROPYL ALCOHOL HETSYN XPE DECAETHYLENE GLYCOL HETSYN IPA 2-PROPANOL FORMUL 2 MG 2(MG 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 XPE C20 H42 O11 FORMUL 7 IPA 2(C3 H8 O) FORMUL 9 HOH *599(H2 O) HELIX 1 1 SER A 4 MET A 19 1 16 HELIX 2 2 ASN A 46 GLY A 54 1 9 HELIX 3 3 ASP A 82 GLY A 90 1 9 HELIX 4 4 LEU A 93 GLY A 103 1 11 HELIX 5 5 GLU A 112 ASN A 122 1 11 HELIX 6 6 TYR A 134 LYS A 150 1 17 HELIX 7 7 GLY A 151 ASN A 155 5 5 HELIX 8 8 TRP A 165 PHE A 175 1 11 HELIX 9 9 SER A 177 CYS A 202 1 26 HELIX 10 10 PHE A 207 HIS A 222 1 16 HELIX 11 11 GLU A 237 ILE A 241 5 5 HELIX 12 12 THR A 283 TYR A 304 1 22 HELIX 13 13 SER A 309 LEU A 328 1 20 HELIX 14 14 ASP A 334 GLN A 341 1 8 HELIX 15 15 GLY A 367 SER A 371 5 5 HELIX 16 16 PRO A 395 ARG A 399 5 5 HELIX 17 17 LYS A 426 LYS A 439 1 14 SHEET 1 A 6 ARG A 106 ALA A 109 0 SHEET 2 A 6 ASN A 72 ASN A 78 1 N LEU A 76 O LEU A 108 SHEET 3 A 6 VAL A 61 LYS A 66 -1 N ILE A 65 O HIS A 73 SHEET 4 A 6 SER A 23 PHE A 28 -1 N SER A 23 O LYS A 66 SHEET 5 A 6 VAL A 126 TYR A 128 1 O TYR A 128 N ALA A 24 SHEET 6 A 6 THR A 161 ILE A 163 1 O THR A 161 N VAL A 127 SHEET 1 B 2 THR A 34 SER A 36 0 SHEET 2 B 2 SER A 39 GLU A 40 -1 O SER A 39 N SER A 36 SHEET 1 C 3 TYR A 226 PRO A 227 0 SHEET 2 C 3 CYS A 263 TYR A 265 -1 O GLU A 264 N TYR A 226 SHEET 3 C 3 TYR A 268 ALA A 269 -1 O TYR A 268 N TYR A 265 SHEET 1 D 3 ILE A 232 SER A 235 0 SHEET 2 D 3 LEU A 256 ALA A 261 -1 O LEU A 258 N GLY A 234 SHEET 3 D 3 ILE A 272 PRO A 277 -1 O ARG A 274 N ILE A 259 SHEET 1 E 3 VAL A 379 VAL A 382 0 SHEET 2 E 3 ASP A 407 THR A 412 -1 O ILE A 409 N LEU A 380 SHEET 3 E 3 GLY A 415 ASN A 418 -1 O GLU A 417 N VAL A 410 SHEET 1 F 2 GLY A 385 ILE A 388 0 SHEET 2 F 2 ILE A 401 ARG A 404 -1 O ILE A 401 N ILE A 388 LINK MG MG A 801 OE1 GLU A 383 1555 1555 3.12 LINK MG MG A 801 OE2 GLU A 383 1555 1555 2.22 LINK MG MG A 801 O HOH A 904 1555 1555 2.10 LINK MG MG A 801 NE2 HIS A 354 1555 1555 2.18 LINK MG MG A 801 O HOH A1083 1555 1555 2.34 LINK MG MG A 801 OE2 GLU A 406 1555 1555 2.07 LINK MG MG A 801 OD2 ASP A 271 1555 1555 2.15 LINK MG MG A 802 O HOH A1245 1555 1555 2.15 LINK MG MG A 802 OE1 GLU A 406 1555 1555 2.13 LINK MG MG A 802 OD1 ASP A 260 1555 1555 2.13 LINK MG MG A 802 OD2 ASP A 260 1555 1555 2.27 LINK MG MG A 802 OD1 ASP A 271 1555 1555 2.01 LINK MG MG A 802 O HOH A 904 1555 1555 2.04 SITE 1 AC1 7 ASP A 271 HIS A 354 GLU A 383 GLU A 406 SITE 2 AC1 7 MG A 802 HOH A 904 HOH A1083 SITE 1 AC2 7 ASP A 260 ASP A 271 THR A 273 GLU A 406 SITE 2 AC2 7 MG A 801 HOH A 904 HOH A1245 SITE 1 AC3 4 ARG A 79 VAL A 80 SER A 111 HOH A1210 SITE 1 AC4 4 ARG A 153 GLY A 351 ARG A 370 HOH A1200 SITE 1 AC5 11 ASP A 38 TRP A 88 SER A 152 ARG A 153 SITE 2 AC5 11 HIS A 243 HIS A 361 TYR A 366 ARG A 370 SITE 3 AC5 11 HOH A1230 HOH A1294 HOH A1451 SITE 1 AC6 5 HIS A 243 GLU A 383 ARG A 404 HOH A 904 SITE 2 AC6 5 HOH A1083 SITE 1 AC7 6 ARG A 149 PRO A 159 ALA A 160 MET A 162 SITE 2 AC7 6 HOH A1023 HOH A1386 CRYST1 177.733 177.733 96.484 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005626 0.003248 0.000000 0.00000 SCALE2 0.000000 0.006497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010364 0.00000 MASTER 429 0 7 17 19 0 13 6 0 0 0 34 END