HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-MAY-04 1WF9 TITLE SOLUTION STRUCTURE OF A NOVEL BETA-GRASP FOLD LIKE DOMAIN TITLE 2 OF HYPOTHETICAL PROTEIN (ARABIDOPSIS THALIANA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NPL4 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HYPOTHETICAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RIKEN RAFL09-18-B15; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030212-84; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS BETA-GRASP FOLD LIKE DOMAIN, ARABIDOPSIS THALIANA, KEYWDS 2 HYPOTHETICAL PROTEIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 1WF9 1 VERSN REVDAT 1 07-JUN-05 1WF9 0 JRNL AUTH X.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF A NOVEL BETA-GRASP FOLD LIKE JRNL TITL 2 DOMAIN OF HYPOTHETICAL PROTEIN (ARABIDOPSIS JRNL TITL 3 THALIANA) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WF9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023515. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.07MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM PINA (PH6.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.854, REMARK 210 CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 40 -60.79 -103.20 REMARK 500 1 THR A 52 31.42 -90.71 REMARK 500 1 ASN A 82 75.05 68.47 REMARK 500 1 HIS A 85 84.58 -60.70 REMARK 500 1 SER A 87 163.28 -41.59 REMARK 500 1 THR A 98 -165.34 -122.92 REMARK 500 2 SER A 2 80.21 44.37 REMARK 500 2 VAL A 23 -166.01 -124.61 REMARK 500 2 ASP A 24 -65.35 -103.66 REMARK 500 2 LEU A 33 -73.54 -65.78 REMARK 500 2 HIS A 46 -29.47 -39.68 REMARK 500 2 THR A 52 35.48 -89.70 REMARK 500 2 THR A 69 59.31 -115.67 REMARK 500 2 ASN A 82 61.61 71.75 REMARK 500 2 SER A 87 173.11 -57.48 REMARK 500 2 SER A 102 -68.44 -100.49 REMARK 500 2 SER A 105 87.09 -163.50 REMARK 500 3 SER A 3 92.51 -173.68 REMARK 500 3 SER A 6 -57.45 -150.68 REMARK 500 3 ASP A 16 37.58 -140.51 REMARK 500 3 VAL A 23 -165.42 -122.56 REMARK 500 3 LEU A 36 -70.57 -57.48 REMARK 500 3 ASN A 82 70.16 66.21 REMARK 500 3 SER A 87 175.11 -48.29 REMARK 500 3 ARG A 100 158.85 -41.39 REMARK 500 3 SER A 102 165.78 71.00 REMARK 500 4 SER A 2 93.70 48.22 REMARK 500 4 VAL A 23 -166.49 -126.13 REMARK 500 4 ASN A 82 43.43 80.08 REMARK 500 4 HIS A 85 92.29 -58.36 REMARK 500 4 SER A 87 171.76 -52.31 REMARK 500 4 GLU A 96 -173.00 -69.05 REMARK 500 5 SER A 3 78.45 -100.74 REMARK 500 5 VAL A 23 -164.91 -127.45 REMARK 500 5 ASP A 24 -62.93 -105.98 REMARK 500 5 THR A 52 33.83 -94.12 REMARK 500 5 ASN A 82 48.10 76.04 REMARK 500 5 HIS A 85 107.93 -51.35 REMARK 500 5 SER A 87 167.84 -45.16 REMARK 500 5 GLU A 96 -176.90 -55.58 REMARK 500 5 THR A 98 -166.24 -74.04 REMARK 500 6 ASP A 16 27.90 -154.19 REMARK 500 6 VAL A 23 -164.87 -122.57 REMARK 500 6 ASP A 39 -61.27 -93.19 REMARK 500 6 ASN A 82 71.40 63.85 REMARK 500 6 HIS A 85 94.88 -52.82 REMARK 500 7 VAL A 23 -168.49 -119.46 REMARK 500 7 LEU A 36 -70.66 -45.43 REMARK 500 7 HIS A 46 -29.86 -39.79 REMARK 500 7 THR A 52 34.74 -91.38 REMARK 500 7 ASN A 82 74.17 64.92 REMARK 500 7 HIS A 85 107.86 -48.12 REMARK 500 7 SER A 87 169.35 -44.85 REMARK 500 7 GLU A 96 179.59 -49.62 REMARK 500 7 THR A 98 -166.00 -67.13 REMARK 500 7 ARG A 100 72.92 52.81 REMARK 500 8 SER A 6 146.93 -173.51 REMARK 500 8 THR A 52 34.05 -89.14 REMARK 500 8 THR A 69 49.22 -149.16 REMARK 500 8 ASN A 82 57.14 79.61 REMARK 500 9 SER A 2 142.39 61.43 REMARK 500 9 VAL A 23 -166.48 -123.40 REMARK 500 9 ASP A 39 -61.10 -91.76 REMARK 500 9 THR A 52 36.45 -89.56 REMARK 500 9 ASN A 82 56.54 81.86 REMARK 500 9 HIS A 85 97.52 -62.80 REMARK 500 9 SER A 87 166.27 -43.95 REMARK 500 9 GLU A 96 -179.30 -66.65 REMARK 500 9 THR A 98 -166.98 -63.47 REMARK 500 9 SER A 102 116.71 177.38 REMARK 500 10 SER A 3 -57.98 -154.08 REMARK 500 10 ASP A 16 36.91 -152.97 REMARK 500 10 VAL A 23 -166.41 -122.55 REMARK 500 10 ASP A 24 -60.62 -107.21 REMARK 500 10 LEU A 36 -71.73 -55.19 REMARK 500 10 ASP A 39 -62.72 -91.96 REMARK 500 10 THR A 52 32.51 -90.13 REMARK 500 10 ASN A 82 73.00 64.42 REMARK 500 10 SER A 87 172.11 -48.69 REMARK 500 10 ALA A 92 119.26 -161.12 REMARK 500 10 SER A 102 141.23 -174.84 REMARK 500 10 SER A 105 94.79 -176.28 REMARK 500 11 SER A 3 166.72 56.83 REMARK 500 11 VAL A 23 -165.88 -122.89 REMARK 500 11 ASP A 24 -62.49 -101.59 REMARK 500 11 ASP A 39 -63.44 -90.43 REMARK 500 11 THR A 52 36.25 -89.60 REMARK 500 11 SER A 87 176.83 -48.65 REMARK 500 11 GLU A 96 -177.74 -68.21 REMARK 500 11 THR A 98 -166.38 -76.91 REMARK 500 11 SER A 102 113.77 60.22 REMARK 500 12 SER A 2 -58.23 -172.53 REMARK 500 12 SER A 3 133.19 62.06 REMARK 500 12 VAL A 23 -165.22 -119.85 REMARK 500 12 LEU A 36 -70.85 -50.46 REMARK 500 12 THR A 52 45.28 -89.57 REMARK 500 12 MET A 71 44.92 -142.86 REMARK 500 12 ASN A 82 63.84 62.59 REMARK 500 12 THR A 98 -165.64 -70.44 REMARK 500 12 SER A 105 106.77 72.90 REMARK 500 13 SER A 3 113.06 -174.00 REMARK 500 13 VAL A 23 -165.09 -123.71 REMARK 500 13 ASP A 24 -62.12 -104.65 REMARK 500 13 HIS A 46 -30.36 -38.65 REMARK 500 13 THR A 52 35.47 -89.40 REMARK 500 13 ASN A 82 74.55 64.30 REMARK 500 13 SER A 87 174.61 -55.10 REMARK 500 13 THR A 98 -168.93 -101.39 REMARK 500 13 SER A 105 166.12 63.38 REMARK 500 14 SER A 6 -58.16 -164.35 REMARK 500 14 VAL A 23 -165.83 -118.95 REMARK 500 14 ASP A 39 -65.63 -90.56 REMARK 500 14 HIS A 46 -30.55 -38.54 REMARK 500 14 THR A 69 41.54 -149.53 REMARK 500 14 ASN A 82 54.63 72.58 REMARK 500 14 SER A 87 168.60 -49.30 REMARK 500 14 SER A 102 93.62 -160.49 REMARK 500 14 SER A 105 114.40 -174.31 REMARK 500 15 SER A 2 -60.50 -122.94 REMARK 500 15 SER A 6 -63.66 -122.95 REMARK 500 15 VAL A 23 -164.44 -120.52 REMARK 500 15 THR A 52 34.60 -98.58 REMARK 500 15 ASN A 82 63.93 77.88 REMARK 500 15 HIS A 85 95.53 -46.07 REMARK 500 15 SER A 87 160.66 -46.55 REMARK 500 16 SER A 2 -58.03 -169.57 REMARK 500 16 VAL A 23 -165.24 -124.41 REMARK 500 16 HIS A 46 -30.30 -38.58 REMARK 500 16 THR A 52 34.44 -89.95 REMARK 500 16 HIS A 85 96.79 -64.20 REMARK 500 16 SER A 87 164.70 -45.83 REMARK 500 17 SER A 3 -53.53 -134.15 REMARK 500 17 VAL A 23 -165.10 -117.18 REMARK 500 17 ASP A 39 -64.25 -90.77 REMARK 500 17 HIS A 46 -30.65 -38.90 REMARK 500 17 THR A 69 47.76 -140.67 REMARK 500 17 MET A 71 56.96 -119.67 REMARK 500 17 ASN A 82 65.50 61.88 REMARK 500 17 HIS A 85 71.13 -67.13 REMARK 500 17 GLU A 96 -168.99 44.10 REMARK 500 17 ARG A 97 -166.05 -69.92 REMARK 500 17 THR A 98 -168.40 -122.08 REMARK 500 17 SER A 105 128.19 -178.81 REMARK 500 18 SER A 2 -58.14 -148.28 REMARK 500 18 VAL A 23 -167.86 -129.08 REMARK 500 18 HIS A 46 -29.56 -39.36 REMARK 500 18 THR A 52 38.07 -88.48 REMARK 500 18 ASN A 82 33.19 74.36 REMARK 500 18 LEU A 83 101.78 -58.54 REMARK 500 18 HIS A 85 100.45 -58.52 REMARK 500 18 SER A 102 135.39 64.19 REMARK 500 19 ASP A 24 -62.36 -103.20 REMARK 500 19 LEU A 36 -70.59 -55.15 REMARK 500 19 HIS A 46 -30.10 -39.17 REMARK 500 19 ASN A 82 69.79 62.22 REMARK 500 19 SER A 87 169.99 -48.28 REMARK 500 19 GLU A 96 -160.62 39.98 REMARK 500 19 SER A 102 125.52 -178.59 REMARK 500 20 SER A 6 -57.64 -124.04 REMARK 500 20 VAL A 23 -167.25 -125.38 REMARK 500 20 ASP A 24 -64.57 -104.89 REMARK 500 20 LEU A 36 -70.06 -56.56 REMARK 500 20 HIS A 46 -29.63 -39.27 REMARK 500 20 THR A 52 35.57 -88.90 REMARK 500 20 ASN A 82 69.64 60.79 REMARK 500 20 SER A 87 168.40 -44.98 REMARK 500 20 SER A 102 -61.72 -146.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATR001004807 RELATED DB: TARGETDB DBREF 1WF9 A 8 101 UNP Q9LYC2 Q9LYC2_ARATH 2 95 SEQADV 1WF9 GLY A 1 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 SER A 2 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 SER A 3 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 GLY A 4 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 SER A 5 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 SER A 6 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 GLY A 7 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 SER A 102 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 GLY A 103 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 PRO A 104 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 SER A 105 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 SER A 106 UNP Q9LYC2 CLONING ARTIFACT SEQADV 1WF9 GLY A 107 UNP Q9LYC2 CLONING ARTIFACT SEQRES 1 A 107 GLY SER SER GLY SER SER GLY THR MET LEU ARG VAL ARG SEQRES 2 A 107 SER ARG ASP GLY LEU GLU ARG VAL SER VAL ASP GLY PRO SEQRES 3 A 107 HIS ILE THR VAL SER GLN LEU LYS THR LEU ILE GLN ASP SEQRES 4 A 107 GLN LEU GLN ILE PRO ILE HIS ASN GLN THR LEU SER THR SEQRES 5 A 107 ASN ARG ASN LEU LEU LEU ALA LYS SER PRO SER ASP PHE SEQRES 6 A 107 LEU ALA PHE THR ASP MET ALA ASP PRO ASN LEU ARG ILE SEQRES 7 A 107 SER SER LEU ASN LEU ALA HIS GLY SER MET VAL TYR LEU SEQRES 8 A 107 ALA TYR GLU GLY GLU ARG THR ILE ARG GLY SER GLY PRO SEQRES 9 A 107 SER SER GLY HELIX 1 1 THR A 29 LEU A 41 1 13 HELIX 2 2 ASN A 53 LEU A 58 5 6 HELIX 3 3 SER A 61 LEU A 66 1 6 HELIX 4 4 ARG A 77 LEU A 81 5 5 SHEET 1 A 3 LEU A 18 VAL A 23 0 SHEET 2 A 3 THR A 8 ARG A 13 -1 N THR A 8 O VAL A 23 SHEET 3 A 3 MET A 88 TYR A 90 1 O VAL A 89 N ARG A 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 241 0 0 4 3 0 0 6 0 0 0 9 END