HEADER RNA BINDING PROTEIN 25-MAY-04 1WF0 TITLE SOLUTION STRUCTURE OF RRM DOMAIN IN TAR DNA-BINDING PROTEIN- TITLE 2 43 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAR DNA-BINDING PROTEIN-43; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN; COMPND 5 SYNONYM: TDP-43; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HEP00195; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS NMR, STRUCTURAL GENOMICS, RRM DOMAIN, TAR DNA-BINDING KEYWDS 2 PROTEIN-43, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 3 RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 1WF0 1 VERSN REVDAT 1 25-NOV-04 1WF0 0 JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RRM DOMAIN IN TAR JRNL TITL 2 DNA-BINDING PROTEIN-43 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.8 REMARK 3 AUTHORS : GUENTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WF0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB023506. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15, 13C; 20MM D-TRIS- REMARK 210 HCL(PH 7.0); 100MM NACL; 1MM D REMARK 210 -DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 1.0.8 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 88.81 -150.85 REMARK 500 1 VAL A 32 93.23 -65.83 REMARK 500 1 CYS A 59 107.70 -57.65 REMARK 500 1 HIS A 79 148.28 -176.17 REMARK 500 2 MET A 17 165.61 -48.14 REMARK 500 2 ALA A 43 37.61 35.82 REMARK 500 2 SER A 81 143.97 72.08 REMARK 500 2 SER A 86 -60.50 -123.82 REMARK 500 3 MET A 17 170.61 -54.08 REMARK 500 3 VAL A 32 96.49 -63.40 REMARK 500 3 ALA A 43 37.16 36.23 REMARK 500 3 SER A 81 95.05 76.10 REMARK 500 4 SER A 2 79.63 -118.50 REMARK 500 4 SER A 6 42.11 -95.71 REMARK 500 4 SER A 83 135.78 68.46 REMARK 500 5 SER A 5 -79.81 -36.11 REMARK 500 5 SER A 6 81.28 -165.35 REMARK 500 5 CYS A 13 -168.50 -112.43 REMARK 500 5 VAL A 32 95.82 -66.01 REMARK 500 5 ALA A 43 29.13 42.92 REMARK 500 5 HIS A 79 35.06 -161.85 REMARK 500 5 ASN A 80 95.30 -52.70 REMARK 500 5 PRO A 85 0.37 -69.72 REMARK 500 5 SER A 86 147.81 66.62 REMARK 500 5 SER A 87 88.29 60.78 REMARK 500 6 SER A 3 116.99 -179.30 REMARK 500 6 SER A 6 33.89 -93.78 REMARK 500 6 ASN A 82 -60.93 174.46 REMARK 500 7 SER A 3 89.22 -167.46 REMARK 500 7 SER A 5 93.32 -171.05 REMARK 500 7 SER A 6 58.64 -104.58 REMARK 500 7 SER A 81 92.21 -172.45 REMARK 500 7 ASN A 82 83.45 56.43 REMARK 500 8 SER A 6 42.29 -96.48 REMARK 500 8 MET A 17 152.38 -39.05 REMARK 500 8 PRO A 85 0.62 -69.71 REMARK 500 8 SER A 87 -68.68 -143.56 REMARK 500 9 SER A 2 95.28 62.00 REMARK 500 9 MET A 17 107.41 -56.99 REMARK 500 9 VAL A 32 96.52 -64.07 REMARK 500 9 ALA A 43 35.49 37.13 REMARK 500 9 SER A 87 -46.34 178.33 REMARK 500 10 SER A 2 65.16 -106.81 REMARK 500 10 SER A 5 83.86 62.84 REMARK 500 10 MET A 17 150.41 -42.06 REMARK 500 10 VAL A 32 99.58 -62.50 REMARK 500 10 LYS A 66 7.46 81.67 REMARK 500 10 ASN A 80 44.42 -99.76 REMARK 500 11 SER A 6 45.28 -109.83 REMARK 500 11 ARG A 12 46.38 37.94 REMARK 500 11 VAL A 32 98.04 -66.54 REMARK 500 11 ALA A 43 40.95 34.63 REMARK 500 11 HIS A 79 92.86 -173.75 REMARK 500 11 ASN A 82 -53.03 -178.49 REMARK 500 11 SER A 83 151.87 63.46 REMARK 500 12 SER A 2 56.86 -168.06 REMARK 500 12 SER A 3 95.76 51.78 REMARK 500 12 ASP A 31 73.63 -118.85 REMARK 500 12 VAL A 32 96.69 -62.60 REMARK 500 12 ALA A 43 37.11 35.42 REMARK 500 12 HIS A 79 -44.17 -160.33 REMARK 500 12 ASN A 80 88.60 35.85 REMARK 500 12 SER A 86 -46.00 -139.56 REMARK 500 12 SER A 87 97.58 -57.48 REMARK 500 13 SER A 6 90.56 34.43 REMARK 500 13 VAL A 10 73.11 -112.75 REMARK 500 13 HIS A 79 -49.07 -148.27 REMARK 500 13 SER A 81 139.85 -171.99 REMARK 500 13 ASN A 82 81.57 62.91 REMARK 500 13 SER A 83 -54.74 -170.79 REMARK 500 14 SER A 6 40.69 -146.77 REMARK 500 14 VAL A 10 77.81 -115.20 REMARK 500 14 CYS A 13 -167.26 -79.12 REMARK 500 14 ASP A 16 -56.85 -147.28 REMARK 500 14 MET A 17 153.49 -37.67 REMARK 500 14 GLU A 19 -33.71 -38.48 REMARK 500 14 ALA A 43 29.45 46.51 REMARK 500 14 ASN A 82 -53.91 -172.16 REMARK 500 14 SER A 86 89.22 -166.65 REMARK 500 15 SER A 5 -43.64 -143.30 REMARK 500 15 SER A 6 42.32 73.36 REMARK 500 15 MET A 17 153.27 -47.55 REMARK 500 15 LYS A 66 -3.54 76.77 REMARK 500 15 SER A 81 152.33 59.07 REMARK 500 15 PRO A 85 99.11 -69.85 REMARK 500 15 SER A 86 49.45 -93.23 REMARK 500 16 SER A 2 113.79 -163.77 REMARK 500 16 GLU A 19 -33.14 -38.02 REMARK 500 16 SER A 87 143.11 -35.33 REMARK 500 17 SER A 2 158.67 173.28 REMARK 500 17 SER A 3 43.37 -164.01 REMARK 500 17 ARG A 12 19.83 53.24 REMARK 500 17 GLU A 19 -39.60 -36.65 REMARK 500 17 ASP A 31 81.64 -66.64 REMARK 500 17 VAL A 32 94.25 -64.94 REMARK 500 17 ALA A 43 31.17 37.33 REMARK 500 17 HIS A 79 139.60 62.67 REMARK 500 17 SER A 81 110.89 -164.82 REMARK 500 17 PRO A 85 93.15 -69.80 REMARK 500 17 SER A 87 -48.41 -156.19 REMARK 500 18 SER A 3 129.61 63.41 REMARK 500 18 SER A 6 56.31 -95.32 REMARK 500 18 MET A 17 150.99 -44.97 REMARK 500 18 GLU A 19 -29.61 -39.30 REMARK 500 18 HIS A 79 -71.62 -64.58 REMARK 500 18 ASN A 80 -63.44 -154.91 REMARK 500 18 SER A 83 142.21 -173.80 REMARK 500 18 SER A 86 162.10 61.35 REMARK 500 19 SER A 2 144.56 175.94 REMARK 500 19 SER A 6 46.38 -102.25 REMARK 500 19 MET A 17 157.44 -45.70 REMARK 500 19 ALA A 43 38.64 37.00 REMARK 500 19 ASN A 80 111.99 -165.83 REMARK 500 19 SER A 86 41.46 -174.85 REMARK 500 20 SER A 2 -48.38 -134.99 REMARK 500 20 SER A 3 -56.52 -126.13 REMARK 500 20 GLU A 19 -36.81 -35.49 REMARK 500 20 ALA A 43 36.14 39.87 REMARK 500 20 ASN A 80 78.51 55.36 REMARK 500 20 ASN A 82 122.40 61.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001277.1 RELATED DB: TARGETDB DBREF 1WF0 A 8 82 UNP Q13148 TADBP_HUMAN 193 267 SEQADV 1WF0 GLY A 1 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 2 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 3 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 GLY A 4 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 5 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 6 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 GLY A 7 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 GLY A 15 UNP Q13148 GLU 200 SEE REMARK 999 SEQADV 1WF0 SER A 83 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 GLY A 84 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 PRO A 85 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 86 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 87 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 GLY A 88 UNP Q13148 CLONING ARTIFACT SEQRES 1 A 88 GLY SER SER GLY SER SER GLY VAL PHE VAL GLY ARG CYS SEQRES 2 A 88 THR GLY ASP MET THR GLU ASP GLU LEU ARG GLU PHE PHE SEQRES 3 A 88 SER GLN TYR GLY ASP VAL MET ASP VAL PHE ILE PRO LYS SEQRES 4 A 88 PRO PHE ARG ALA PHE ALA PHE VAL THR PHE ALA ASP ASP SEQRES 5 A 88 GLN ILE ALA GLN SER LEU CYS GLY GLU ASP LEU ILE ILE SEQRES 6 A 88 LYS GLY ILE SER VAL HIS ILE SER ASN ALA GLU PRO LYS SEQRES 7 A 88 HIS ASN SER ASN SER GLY PRO SER SER GLY HELIX 1 1 GLU A 19 PHE A 26 1 8 HELIX 2 2 SER A 27 TYR A 29 1 3 HELIX 3 3 ASP A 52 LEU A 58 1 7 SHEET 1 A 5 GLY A 7 GLY A 11 0 SHEET 2 A 5 ASP A 34 PHE A 36 -1 O THR A 48 N ASP A 34 SHEET 3 A 5 ALA A 45 THR A 48 -1 N VAL A 8 O VAL A 47 SHEET 4 A 5 ASP A 62 ILE A 65 -1 O SER A 73 N PHE A 9 SHEET 5 A 5 ILE A 68 SER A 73 -1 N LEU A 63 O VAL A 70 CISPEP 1 LYS A 39 PRO A 40 1 -0.17 CISPEP 2 LYS A 39 PRO A 40 2 -0.08 CISPEP 3 LYS A 39 PRO A 40 3 -0.20 CISPEP 4 LYS A 39 PRO A 40 4 -0.19 CISPEP 5 LYS A 39 PRO A 40 5 -0.09 CISPEP 6 LYS A 39 PRO A 40 6 -0.03 CISPEP 7 LYS A 39 PRO A 40 7 0.06 CISPEP 8 LYS A 39 PRO A 40 8 -0.11 CISPEP 9 LYS A 39 PRO A 40 9 0.03 CISPEP 10 LYS A 39 PRO A 40 10 -0.13 CISPEP 11 LYS A 39 PRO A 40 11 -0.14 CISPEP 12 LYS A 39 PRO A 40 12 -0.05 CISPEP 13 LYS A 39 PRO A 40 13 -0.09 CISPEP 14 LYS A 39 PRO A 40 14 -0.11 CISPEP 15 LYS A 39 PRO A 40 15 -0.27 CISPEP 16 LYS A 39 PRO A 40 16 0.03 CISPEP 17 LYS A 39 PRO A 40 17 -0.10 CISPEP 18 LYS A 39 PRO A 40 18 -0.03 CISPEP 19 LYS A 39 PRO A 40 19 -0.12 CISPEP 20 LYS A 39 PRO A 40 20 -0.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 200 0 0 3 5 0 0 6 0 0 0 7 END