HEADER DNA BINDING PROTEIN 25-MAY-04 1WEN TITLE SOLUTION STRUCTURE OF PHD DOMAIN IN ING1-LIKE PROTEIN TITLE 2 BAC25079 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INHIBITOR OF GROWTH FAMILY, MEMBER 4; ING1-LIKE COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PHD DOMAIN; COMPND 6 SYNONYM: ING1-LIKE PROTEIN BAC25079; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1110062A16; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030408-71; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS NMR, STRUCTURAL GENOMICS, PHD DOMAIN, ING1-LIKE PROTEIN, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA KEYWDS 3 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 1WEN 1 VERSN REVDAT 1 25-NOV-04 1WEN 0 JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF PHD DOMAIN IN ING1-LIKE JRNL TITL 2 PROTEIN BAC25079 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WEN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB023495. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15, 13C; 20MM D-TRIS- REMARK 210 HCL(PH 7.0); 100MM NACL; 0.1MM REMARK 210 ZNCL2; 1MM D-TDD; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 123.91 -34.82 REMARK 500 1 VAL A 11 175.83 -51.64 REMARK 500 1 PRO A 13 2.27 -69.74 REMARK 500 1 TYR A 18 -75.28 -127.72 REMARK 500 1 CYS A 21 -17.99 -49.92 REMARK 500 1 CYS A 37 129.89 -39.47 REMARK 500 1 PHE A 44 -70.75 -52.61 REMARK 500 1 ALA A 45 -31.73 -38.33 REMARK 500 1 VAL A 47 35.01 -83.19 REMARK 500 1 PRO A 60 7.15 -69.79 REMARK 500 1 SER A 69 97.55 -45.52 REMARK 500 2 MET A 9 130.43 -34.35 REMARK 500 2 PRO A 10 -178.66 -69.74 REMARK 500 2 TYR A 18 -70.91 -104.98 REMARK 500 2 CYS A 19 160.65 -39.76 REMARK 500 2 CYS A 32 155.71 -45.71 REMARK 500 2 CYS A 37 126.00 -39.69 REMARK 500 2 VAL A 47 34.43 -83.40 REMARK 500 2 CYS A 59 153.91 -48.68 REMARK 500 2 PRO A 60 4.20 -69.79 REMARK 500 2 GLN A 64 49.71 -94.96 REMARK 500 3 ASP A 8 145.63 -35.07 REMARK 500 3 MET A 9 99.86 -37.26 REMARK 500 3 CYS A 19 160.70 -45.82 REMARK 500 3 SER A 25 101.61 -44.37 REMARK 500 3 ASP A 33 30.20 -97.39 REMARK 500 3 VAL A 47 31.68 -84.52 REMARK 500 3 CYS A 59 153.85 -48.43 REMARK 500 3 PRO A 60 5.18 -69.81 REMARK 500 3 GLN A 64 40.58 -81.77 REMARK 500 4 MET A 9 152.18 -41.35 REMARK 500 4 VAL A 11 178.37 -56.31 REMARK 500 4 TYR A 18 -74.62 -131.30 REMARK 500 4 SER A 25 98.89 -66.31 REMARK 500 4 CYS A 32 135.87 -37.59 REMARK 500 4 VAL A 47 36.97 -81.54 REMARK 500 4 CYS A 59 155.70 -43.71 REMARK 500 4 PRO A 60 3.80 -69.76 REMARK 500 4 PRO A 68 86.51 -69.74 REMARK 500 5 TYR A 18 -69.91 -109.83 REMARK 500 5 CYS A 19 165.63 -44.65 REMARK 500 5 CYS A 32 134.04 -38.16 REMARK 500 5 CYS A 37 124.31 -36.16 REMARK 500 5 GLU A 40 37.42 36.36 REMARK 500 5 TRP A 41 112.67 -165.58 REMARK 500 5 VAL A 47 31.22 -84.04 REMARK 500 5 CYS A 59 153.95 -42.44 REMARK 500 5 PRO A 60 4.49 -69.78 REMARK 500 5 GLN A 64 75.31 -100.64 REMARK 500 5 SER A 66 103.70 -34.58 REMARK 500 5 PRO A 68 5.44 -69.78 REMARK 500 5 SER A 69 105.19 -32.63 REMARK 500 6 PRO A 10 -174.08 -69.72 REMARK 500 6 TYR A 18 -73.55 -117.17 REMARK 500 6 CYS A 19 162.58 -41.71 REMARK 500 6 CYS A 37 133.68 -39.46 REMARK 500 6 TRP A 41 119.40 -165.75 REMARK 500 6 CYS A 59 154.60 -40.17 REMARK 500 6 PRO A 60 9.05 -69.76 REMARK 500 6 GLN A 64 42.45 -81.12 REMARK 500 6 SER A 70 -61.51 -97.07 REMARK 500 7 SER A 5 124.26 -170.34 REMARK 500 7 CYS A 19 162.58 -43.44 REMARK 500 7 SER A 25 102.77 -56.06 REMARK 500 7 CYS A 32 158.03 -45.93 REMARK 500 7 CYS A 37 134.29 -39.16 REMARK 500 7 PHE A 44 -70.91 -37.10 REMARK 500 7 CYS A 59 155.23 -45.44 REMARK 500 7 PRO A 60 3.98 -69.77 REMARK 500 8 SER A 6 43.74 34.36 REMARK 500 8 ASP A 8 61.31 -100.46 REMARK 500 8 VAL A 11 146.11 -33.96 REMARK 500 8 PRO A 13 2.84 -69.79 REMARK 500 8 TYR A 18 -70.60 -108.65 REMARK 500 8 CYS A 19 160.54 -40.25 REMARK 500 8 SER A 25 109.95 -48.44 REMARK 500 8 CYS A 32 136.80 -34.79 REMARK 500 8 CYS A 37 114.18 -37.36 REMARK 500 8 TRP A 41 117.67 -169.52 REMARK 500 8 VAL A 47 34.29 -93.04 REMARK 500 8 PRO A 53 96.18 -69.76 REMARK 500 8 CYS A 59 154.53 -47.76 REMARK 500 8 PRO A 60 6.52 -69.78 REMARK 500 8 GLN A 64 76.45 -111.94 REMARK 500 8 PRO A 68 13.18 -69.77 REMARK 500 8 SER A 69 127.01 -28.91 REMARK 500 9 PRO A 10 -175.51 -69.74 REMARK 500 9 TYR A 18 -68.03 -102.04 REMARK 500 9 CYS A 19 159.87 -40.80 REMARK 500 9 SER A 25 102.01 -53.79 REMARK 500 9 CYS A 32 132.10 -39.87 REMARK 500 9 CYS A 37 137.17 -34.75 REMARK 500 9 PRO A 53 99.46 -69.78 REMARK 500 9 PRO A 60 10.26 -69.73 REMARK 500 9 GLN A 64 75.16 -108.12 REMARK 500 10 PRO A 10 88.67 -69.74 REMARK 500 10 PRO A 13 2.86 -69.77 REMARK 500 10 CYS A 19 161.00 -39.73 REMARK 500 10 SER A 25 101.76 -52.30 REMARK 500 10 CYS A 37 119.00 -37.12 REMARK 500 10 GLU A 40 37.08 35.62 REMARK 500 10 TRP A 41 115.80 -164.76 REMARK 500 10 CYS A 59 154.06 -49.00 REMARK 500 10 PRO A 60 7.02 -69.77 REMARK 500 10 GLN A 64 39.10 -91.66 REMARK 500 10 GLU A 65 42.13 -81.46 REMARK 500 10 SER A 66 151.95 -34.50 REMARK 500 10 PRO A 68 5.55 -69.73 REMARK 500 10 SER A 69 97.53 -66.74 REMARK 500 11 PRO A 10 16.13 -69.78 REMARK 500 11 VAL A 11 135.32 -28.69 REMARK 500 11 GLU A 15 156.18 -49.93 REMARK 500 11 TYR A 18 -68.10 -128.18 REMARK 500 11 CYS A 19 162.24 -41.34 REMARK 500 11 TYR A 26 138.68 -170.25 REMARK 500 11 CYS A 37 110.84 -37.65 REMARK 500 11 CYS A 59 154.29 -38.73 REMARK 500 11 PRO A 60 4.11 -69.76 REMARK 500 11 GLU A 65 103.71 -55.93 REMARK 500 12 VAL A 11 167.71 -43.37 REMARK 500 12 PRO A 13 1.54 -69.81 REMARK 500 12 CYS A 19 162.19 -41.94 REMARK 500 12 SER A 25 101.46 -56.03 REMARK 500 12 CYS A 32 146.31 -36.15 REMARK 500 12 CYS A 37 120.98 -32.84 REMARK 500 12 TRP A 41 118.67 -165.46 REMARK 500 12 VAL A 47 34.17 -92.71 REMARK 500 12 LYS A 56 140.12 -36.51 REMARK 500 12 CYS A 59 155.19 -46.17 REMARK 500 12 PRO A 60 12.03 -69.80 REMARK 500 12 PRO A 68 92.55 -69.83 REMARK 500 13 CYS A 19 164.17 -44.80 REMARK 500 13 CYS A 37 151.43 -36.52 REMARK 500 13 VAL A 47 31.98 -83.18 REMARK 500 13 CYS A 59 154.48 -47.97 REMARK 500 13 GLN A 64 41.16 -81.28 REMARK 500 14 PRO A 10 -174.84 -69.74 REMARK 500 14 VAL A 11 170.87 -52.06 REMARK 500 14 TYR A 18 -70.29 -115.74 REMARK 500 14 CYS A 19 161.91 -40.78 REMARK 500 14 SER A 25 100.02 -57.99 REMARK 500 14 CYS A 32 146.17 -36.02 REMARK 500 14 CYS A 37 111.85 -34.99 REMARK 500 14 TRP A 41 119.30 -169.37 REMARK 500 14 CYS A 59 153.98 -36.72 REMARK 500 14 PRO A 60 13.87 -69.76 REMARK 500 14 SER A 63 33.34 -83.65 REMARK 500 14 SER A 69 130.16 -38.76 REMARK 500 15 PRO A 10 -165.99 -69.73 REMARK 500 15 ASN A 14 31.04 35.23 REMARK 500 15 TYR A 18 -57.73 -122.71 REMARK 500 15 CYS A 32 156.62 -45.59 REMARK 500 15 CYS A 59 154.49 -38.48 REMARK 500 15 PRO A 60 3.47 -69.73 REMARK 500 15 PRO A 68 -176.62 -69.70 REMARK 500 16 SER A 5 132.59 -170.80 REMARK 500 16 TYR A 18 -71.46 -108.42 REMARK 500 16 CYS A 19 162.06 -44.59 REMARK 500 16 CYS A 32 127.83 -38.50 REMARK 500 16 THR A 50 27.41 38.27 REMARK 500 16 PRO A 53 86.88 -69.75 REMARK 500 16 PRO A 60 6.70 -69.73 REMARK 500 16 PRO A 68 91.73 -69.79 REMARK 500 17 TYR A 18 -70.67 -111.45 REMARK 500 17 CYS A 19 162.62 -40.94 REMARK 500 17 CYS A 32 153.57 -39.00 REMARK 500 17 LYS A 52 124.33 -39.07 REMARK 500 17 CYS A 59 154.54 -43.98 REMARK 500 17 PRO A 60 4.07 -69.79 REMARK 500 17 GLN A 64 51.98 31.03 REMARK 500 17 PRO A 68 -170.64 -69.69 REMARK 500 18 GLU A 15 104.48 -45.87 REMARK 500 18 TYR A 18 -62.25 -123.64 REMARK 500 18 CYS A 32 141.27 -34.75 REMARK 500 18 CYS A 37 108.87 -46.75 REMARK 500 18 VAL A 47 32.54 -93.64 REMARK 500 18 CYS A 59 154.80 -38.60 REMARK 500 18 PRO A 60 5.68 -69.78 REMARK 500 18 GLN A 64 41.75 -92.51 REMARK 500 18 PRO A 68 -174.57 -69.81 REMARK 500 18 SER A 69 93.86 -68.03 REMARK 500 19 CYS A 19 162.31 -47.07 REMARK 500 19 LYS A 52 125.44 -34.48 REMARK 500 19 CYS A 59 155.35 -39.44 REMARK 500 19 GLN A 64 44.60 -80.46 REMARK 500 19 PRO A 68 0.37 -69.79 REMARK 500 19 SER A 69 131.93 -33.37 REMARK 500 19 SER A 70 45.75 -94.40 REMARK 500 20 SER A 3 132.48 -174.78 REMARK 500 20 ASP A 8 142.06 -173.80 REMARK 500 20 PRO A 10 6.41 -69.76 REMARK 500 20 CYS A 19 158.86 -40.36 REMARK 500 20 CYS A 32 159.51 -45.42 REMARK 500 20 PHE A 44 -70.67 -36.66 REMARK 500 20 PRO A 53 89.71 -69.75 REMARK 500 20 CYS A 59 155.01 -47.73 REMARK 500 20 PRO A 60 6.97 -69.79 REMARK 500 20 GLN A 64 48.61 -75.85 REMARK 500 20 SER A 69 42.78 39.37 REMARK 500 20 SER A 70 156.88 -45.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 CYS A 19 SG 116.6 REMARK 620 3 HIS A 43 ND1 117.5 101.3 REMARK 620 4 CYS A 21 SG 86.9 117.3 118.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 32 SG 113.7 REMARK 620 3 CYS A 59 SG 118.5 118.8 REMARK 620 4 CYS A 62 SG 95.0 118.5 86.8 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007014689.1 RELATED DB: TARGETDB DBREF 1WEN A 8 65 UNP Q8C0D7 ING4_MOUSE 187 244 SEQADV 1WEN GLY A 1 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN SER A 2 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN SER A 3 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN GLY A 4 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN SER A 5 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN SER A 6 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN GLY A 7 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN SER A 66 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN GLY A 67 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN PRO A 68 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN SER A 69 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN SER A 70 UNP Q8C0D7 CLONING ARTIFACT SEQADV 1WEN GLY A 71 UNP Q8C0D7 CLONING ARTIFACT SEQRES 1 A 71 GLY SER SER GLY SER SER GLY ASP MET PRO VAL ASP PRO SEQRES 2 A 71 ASN GLU PRO THR TYR CYS LEU CYS HIS GLN VAL SER TYR SEQRES 3 A 71 GLY GLU MET ILE GLY CYS ASP ASN PRO ASP CYS SER ILE SEQRES 4 A 71 GLU TRP PHE HIS PHE ALA CYS VAL GLY LEU THR THR LYS SEQRES 5 A 71 PRO ARG GLY LYS TRP PHE CYS PRO ARG CYS SER GLN GLU SEQRES 6 A 71 SER GLY PRO SER SER GLY HET ZN A 201 1 HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 PHE A 44 VAL A 47 1 4 HELIX 2 2 PRO A 60 GLN A 64 1 5 SHEET 1 A 2 MET A 29 ILE A 30 0 SHEET 2 A 2 PHE A 42 HIS A 43 -1 O PHE A 42 N ILE A 30 LINK ZN ZN A 201 SG CYS A 46 1555 1555 2.33 LINK ZN ZN A 201 SG CYS A 19 1555 1555 2.35 LINK ZN ZN A 201 ND1 HIS A 43 1555 1555 2.33 LINK ZN ZN A 201 SG CYS A 21 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 37 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 32 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 59 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 62 1555 1555 2.33 SITE 1 AC1 4 CYS A 19 CYS A 21 HIS A 43 CYS A 46 SITE 1 AC2 4 CYS A 32 CYS A 37 CYS A 59 CYS A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 307 0 2 2 2 0 2 6 0 0 0 6 END