HEADER LIGASE 11-MAY-04 1WD2 TITLE SOLUTION STRUCTURE OF THE C-TERMINAL RING FROM A RING-IBR- TITLE 2 RING (TRIAD) MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARIADNE-1 PROTEIN HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL RING; COMPND 5 SYNONYM: ARI-1, UBIQUITIN-CONJUGATING ENZYME E2- BINDING COMPND 6 PROTEIN 1, UBCH7-BINDING PROTEIN, UBCM4-INTERACTING COMPND 7 PROTEIN, HHARI, H7-AP2, HUSSY-27, MOP-6; COMPND 8 EC: 6.3.2.19; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T KEYWDS RING, IBR, TRIAD, ZINC FINGER, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.D.CAPILI,E.L.EDGHILL,K.WU,K.L.B.BORDEN REVDAT 2 24-FEB-09 1WD2 1 VERSN REVDAT 1 20-JUL-04 1WD2 0 JRNL AUTH A.D.CAPILI,E.L.EDGHILL,K.WU,K.L.B.BORDEN JRNL TITL STRUCTURE OF THE C-TERMINAL RING FINGER FROM A JRNL TITL 2 RING-IBR-RING/TRIAD MOTIF REVEALS A NOVEL JRNL TITL 3 ZINC-BINDING DOMAIN DISTINCT FROM A RING JRNL REF J.MOL.BIOL. V. 340 1117 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15236971 JRNL DOI 10.1016/J.JMB.2004.05.035 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WD2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB023446. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 120MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM RING2, U-15N,13C; 20MM REMARK 210 TRIS-D11(PH 8.0), 120MM NACL; REMARK 210 1MM RING2, U-15N; 20MM TRIS- REMARK 210 D11(PH 8.0), 120MM NACL; 1MM REMARK 210 RING2, U-13C; 20MM TRIS-D11(PH REMARK 210 8.0), 120MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA & HN(CO)CA, HNCACB & REMARK 210 HN(CO)CACB, (H)C(CO)NH-TOCSY, REMARK 210 H(CCO)NH-TOCSY, 3D_15N- REMARK 210 SEPARATED_TOCSY, 3D_15N- REMARK 210 SEPARATED_NOESY, HNHA, 3D_13C- REMARK 210 SEPARATED_NOESY, 3D_13C- REMARK 210 SEPARATED_HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRVIEW 3.1.2, REMARK 210 CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 FOLLOWED BY SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 6 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 29 95.45 -64.56 REMARK 500 1 MET A 35 -157.37 -171.07 REMARK 500 1 VAL A 36 94.13 -67.39 REMARK 500 1 ASN A 39 -89.52 -78.21 REMARK 500 1 GLN A 40 -82.42 -107.40 REMARK 500 1 TRP A 48 -176.50 49.62 REMARK 500 1 PRO A 53 170.17 -57.67 REMARK 500 1 TYR A 62 -65.15 -94.85 REMARK 500 1 ASN A 63 -61.82 -105.53 REMARK 500 1 CYS A 64 -63.79 175.80 REMARK 500 1 ARG A 66 38.99 -96.38 REMARK 500 1 TYR A 67 116.40 -173.90 REMARK 500 2 ALA A 13 -165.46 -175.89 REMARK 500 2 ALA A 14 142.94 66.44 REMARK 500 2 ASP A 29 95.63 -64.52 REMARK 500 2 MET A 35 -156.15 -169.63 REMARK 500 2 VAL A 36 92.66 -65.99 REMARK 500 2 ARG A 38 38.78 -140.34 REMARK 500 2 ASN A 39 -90.17 -78.28 REMARK 500 2 GLN A 40 -81.38 -105.84 REMARK 500 2 TRP A 48 -176.48 50.30 REMARK 500 2 TYR A 62 -65.71 -94.69 REMARK 500 2 ASN A 63 -63.23 -106.14 REMARK 500 2 CYS A 64 -72.41 174.51 REMARK 500 3 ALA A 14 -68.90 -132.55 REMARK 500 3 ASN A 15 164.89 58.61 REMARK 500 3 ASP A 29 95.12 -64.43 REMARK 500 3 MET A 35 -155.99 -172.25 REMARK 500 3 VAL A 36 91.07 -66.64 REMARK 500 3 ASN A 39 -86.56 -69.30 REMARK 500 3 GLN A 40 -81.14 -111.93 REMARK 500 3 TRP A 48 -175.07 47.40 REMARK 500 3 LEU A 51 37.72 70.20 REMARK 500 3 PRO A 53 171.60 -57.93 REMARK 500 3 TYR A 62 -65.60 -94.95 REMARK 500 3 ASN A 63 -61.69 -105.86 REMARK 500 3 CYS A 64 -177.62 179.00 REMARK 500 3 ASN A 65 -175.75 -65.83 REMARK 500 4 MET A 35 -157.01 -172.97 REMARK 500 4 VAL A 36 95.29 -66.54 REMARK 500 4 ASN A 39 -84.18 -66.90 REMARK 500 4 GLN A 40 -81.22 -115.28 REMARK 500 4 TRP A 48 -173.62 43.98 REMARK 500 4 LEU A 51 35.21 71.12 REMARK 500 4 TYR A 62 -63.86 -96.79 REMARK 500 4 CYS A 64 32.39 70.27 REMARK 500 5 ALA A 14 -81.31 62.95 REMARK 500 5 ASN A 15 -173.79 45.77 REMARK 500 5 GLU A 27 -60.43 -90.17 REMARK 500 5 ASP A 29 95.68 -64.75 REMARK 500 5 MET A 35 -157.04 -170.32 REMARK 500 5 VAL A 36 92.17 -66.35 REMARK 500 5 ASN A 39 -90.51 -76.80 REMARK 500 5 GLN A 40 -82.47 -106.96 REMARK 500 5 TRP A 48 -176.58 49.76 REMARK 500 5 PRO A 53 178.83 -57.49 REMARK 500 5 TYR A 62 -63.73 -95.91 REMARK 500 5 ASN A 65 101.42 179.11 REMARK 500 6 ALA A 13 -165.43 -125.39 REMARK 500 6 ALA A 14 109.92 64.63 REMARK 500 6 ASP A 29 95.55 -64.23 REMARK 500 6 MET A 35 -156.66 -172.91 REMARK 500 6 VAL A 36 93.77 -67.13 REMARK 500 6 ASN A 39 -85.73 -68.29 REMARK 500 6 GLN A 40 -81.21 -112.20 REMARK 500 6 TRP A 48 -177.30 51.22 REMARK 500 6 PRO A 53 178.81 -58.14 REMARK 500 6 TYR A 62 -63.52 -96.51 REMARK 500 6 ASN A 65 134.28 -176.34 REMARK 500 6 ARG A 66 -71.51 -88.68 REMARK 500 7 ALA A 13 -49.13 -158.63 REMARK 500 7 ALA A 14 93.45 -59.21 REMARK 500 7 ASP A 29 95.58 -64.56 REMARK 500 7 MET A 35 -155.77 -170.63 REMARK 500 7 VAL A 36 91.56 -65.86 REMARK 500 7 ARG A 38 39.41 -141.85 REMARK 500 7 ASN A 39 -91.86 -79.24 REMARK 500 7 GLN A 40 -81.42 -103.59 REMARK 500 7 TRP A 48 -175.81 49.87 REMARK 500 7 PRO A 53 172.44 -59.00 REMARK 500 7 TYR A 62 -64.92 -95.05 REMARK 500 7 ASN A 63 -62.26 -105.18 REMARK 500 7 CYS A 64 -177.84 179.26 REMARK 500 7 ASN A 65 -176.07 -58.16 REMARK 500 7 ARG A 66 -71.67 -69.74 REMARK 500 8 ILE A 12 102.04 64.19 REMARK 500 8 ALA A 13 37.90 -159.49 REMARK 500 8 ALA A 14 106.44 -166.99 REMARK 500 8 ASP A 29 96.05 -64.23 REMARK 500 8 MET A 35 -157.53 -173.10 REMARK 500 8 VAL A 36 92.64 -68.07 REMARK 500 8 ASN A 39 -87.49 -69.56 REMARK 500 8 GLN A 40 -78.24 -110.41 REMARK 500 8 TRP A 48 -173.69 45.14 REMARK 500 8 LEU A 51 32.50 71.52 REMARK 500 8 PRO A 53 179.18 -56.55 REMARK 500 8 TYR A 62 -63.87 -96.88 REMARK 500 8 ASN A 65 99.04 -179.58 REMARK 500 9 ALA A 13 -42.92 -171.87 REMARK 500 9 MET A 35 -157.72 -170.71 REMARK 500 9 VAL A 36 92.05 -66.57 REMARK 500 9 ASN A 39 -86.20 -69.52 REMARK 500 9 GLN A 40 -81.28 -108.99 REMARK 500 9 TRP A 48 -176.47 50.72 REMARK 500 9 PRO A 53 173.27 -57.88 REMARK 500 9 TYR A 62 -64.07 -97.01 REMARK 500 9 CYS A 64 32.09 71.00 REMARK 500 9 ASN A 65 109.70 -177.97 REMARK 500 10 ALA A 14 -84.66 61.62 REMARK 500 10 ASN A 15 -173.78 56.22 REMARK 500 10 ASP A 29 96.25 -64.60 REMARK 500 10 MET A 35 -157.38 -172.27 REMARK 500 10 VAL A 36 91.69 -67.27 REMARK 500 10 ASN A 39 -85.66 -70.01 REMARK 500 10 GLN A 40 -81.06 -111.45 REMARK 500 10 TRP A 48 -177.38 50.11 REMARK 500 10 TYR A 62 -63.98 -96.23 REMARK 500 10 ASN A 65 139.66 -179.69 REMARK 500 11 ALA A 13 33.87 -157.70 REMARK 500 11 ASP A 29 96.71 -64.61 REMARK 500 11 MET A 35 -156.94 -172.15 REMARK 500 11 VAL A 36 91.49 -66.98 REMARK 500 11 ASN A 39 -85.03 -77.30 REMARK 500 11 GLN A 40 -82.26 -98.71 REMARK 500 11 TRP A 48 -177.02 50.79 REMARK 500 11 PRO A 53 178.95 -56.73 REMARK 500 11 TYR A 62 -63.51 -96.50 REMARK 500 12 ILE A 12 108.24 61.01 REMARK 500 12 ASP A 29 95.50 -64.33 REMARK 500 12 MET A 35 -156.99 -172.73 REMARK 500 12 VAL A 36 93.31 -67.77 REMARK 500 12 ASN A 39 -86.27 -70.32 REMARK 500 12 GLN A 40 -82.00 -108.11 REMARK 500 12 TRP A 48 -176.24 48.28 REMARK 500 12 TYR A 62 -63.56 -96.46 REMARK 500 12 ASN A 65 106.60 -178.80 REMARK 500 13 ALA A 14 106.56 59.10 REMARK 500 13 ASP A 29 96.30 -64.44 REMARK 500 13 MET A 35 -157.42 -172.90 REMARK 500 13 VAL A 36 92.80 -68.17 REMARK 500 13 ASN A 39 -85.82 -70.01 REMARK 500 13 GLN A 40 -82.41 -109.67 REMARK 500 13 TRP A 48 -173.21 44.27 REMARK 500 13 LEU A 51 32.76 71.49 REMARK 500 13 PRO A 53 175.89 -55.51 REMARK 500 13 TYR A 62 -65.16 -96.34 REMARK 500 13 CYS A 64 179.41 60.90 REMARK 500 13 ASN A 65 -172.55 47.88 REMARK 500 13 ARG A 66 -60.78 -139.96 REMARK 500 14 ALA A 14 127.88 63.28 REMARK 500 14 ASN A 15 -178.21 -176.66 REMARK 500 14 GLU A 27 -60.17 -90.13 REMARK 500 14 ASP A 29 96.43 -64.83 REMARK 500 14 MET A 35 -157.79 -172.52 REMARK 500 14 VAL A 36 91.20 -67.66 REMARK 500 14 ASN A 39 -87.95 -70.35 REMARK 500 14 GLN A 40 -78.52 -105.58 REMARK 500 14 TRP A 48 -176.53 48.92 REMARK 500 14 PRO A 53 171.29 -56.85 REMARK 500 14 TYR A 62 -64.24 -96.76 REMARK 500 14 CYS A 64 125.69 73.67 REMARK 500 14 ASN A 65 85.44 68.13 REMARK 500 14 ARG A 66 -77.35 -60.97 REMARK 500 15 ALA A 14 123.85 -173.69 REMARK 500 15 GLU A 27 -60.47 -90.68 REMARK 500 15 ASP A 29 95.84 -66.86 REMARK 500 15 MET A 35 -157.18 -172.45 REMARK 500 15 VAL A 36 92.67 -67.43 REMARK 500 15 ASN A 39 -87.82 -73.78 REMARK 500 15 GLN A 40 -82.06 -104.20 REMARK 500 15 TRP A 48 -176.12 49.12 REMARK 500 15 PRO A 53 173.76 -59.19 REMARK 500 15 TYR A 62 -66.89 -94.48 REMARK 500 15 ASN A 63 -64.01 -106.81 REMARK 500 15 CYS A 64 169.91 163.30 REMARK 500 15 ASN A 65 -168.52 45.44 REMARK 500 16 MET A 35 -157.00 -171.81 REMARK 500 16 VAL A 36 92.06 -66.59 REMARK 500 16 ASN A 39 -86.57 -70.16 REMARK 500 16 GLN A 40 -80.49 -113.11 REMARK 500 16 TRP A 48 -176.52 50.72 REMARK 500 16 PRO A 53 171.19 -58.17 REMARK 500 16 TYR A 62 -64.18 -96.88 REMARK 500 16 ASN A 65 110.70 -178.65 REMARK 500 17 ALA A 13 -64.39 -169.96 REMARK 500 17 ASP A 29 94.61 -64.46 REMARK 500 17 MET A 35 -155.84 -170.39 REMARK 500 17 VAL A 36 91.42 -65.46 REMARK 500 17 ARG A 38 37.94 -140.09 REMARK 500 17 ASN A 39 -90.08 -77.11 REMARK 500 17 GLN A 40 -81.94 -108.12 REMARK 500 17 TRP A 48 -176.38 50.76 REMARK 500 17 TYR A 62 -63.91 -96.65 REMARK 500 17 CYS A 64 32.14 70.65 REMARK 500 18 ALA A 13 39.43 -162.75 REMARK 500 18 GLU A 27 -60.50 -90.31 REMARK 500 18 ASP A 29 96.58 -64.85 REMARK 500 18 MET A 35 -157.49 -172.31 REMARK 500 18 VAL A 36 92.19 -67.29 REMARK 500 18 ASN A 39 -86.36 -71.73 REMARK 500 18 GLN A 40 -80.82 -108.41 REMARK 500 18 TRP A 48 -176.75 49.49 REMARK 500 18 PRO A 53 177.90 -57.87 REMARK 500 18 TYR A 62 -63.54 -96.50 REMARK 500 18 ASN A 65 86.27 179.81 REMARK 500 19 ALA A 13 29.63 48.79 REMARK 500 19 ASP A 29 95.56 -64.61 REMARK 500 19 MET A 35 -157.63 -173.01 REMARK 500 19 VAL A 36 93.23 -67.95 REMARK 500 19 ASN A 39 -85.64 -71.09 REMARK 500 19 GLN A 40 -81.52 -108.89 REMARK 500 19 TRP A 48 -174.20 44.69 REMARK 500 19 LEU A 51 33.03 71.32 REMARK 500 19 PRO A 53 178.63 -56.05 REMARK 500 19 TYR A 62 -64.06 -97.64 REMARK 500 20 ALA A 13 43.96 -95.58 REMARK 500 20 ASP A 29 97.31 -64.25 REMARK 500 20 MET A 35 -157.40 -172.97 REMARK 500 20 VAL A 36 95.61 -67.78 REMARK 500 20 ASN A 39 -80.41 -127.72 REMARK 500 20 ASN A 41 19.65 -171.32 REMARK 500 20 TRP A 48 -173.53 43.74 REMARK 500 20 LEU A 51 35.61 71.06 REMARK 500 20 PRO A 53 171.61 -56.85 REMARK 500 20 TYR A 62 -65.61 -95.06 REMARK 500 20 ASN A 63 -61.38 -105.82 REMARK 500 20 CYS A 64 -168.11 177.28 REMARK 500 20 ASN A 65 -173.01 -62.25 REMARK 500 20 ARG A 66 40.35 -95.56 REMARK 500 20 TYR A 67 136.34 -178.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 71 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 19 SG REMARK 620 2 CYS A 22 SG 101.0 REMARK 620 3 CYS A 37 SG 108.5 149.5 REMARK 620 4 CYS A 42 SG 104.2 83.1 82.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 71 DBREF 1WD2 A 11 69 UNP Q9Y4X5 ARI1_HUMAN 336 394 SEQADV 1WD2 PHE A 70 UNP Q9Y4X5 CLONING ARTIFACT SEQRES 1 A 60 TRP ILE ALA ALA ASN THR LYS GLU CYS PRO LYS CYS HIS SEQRES 2 A 60 VAL THR ILE GLU LYS ASP GLY GLY CYS ASN HIS MET VAL SEQRES 3 A 60 CYS ARG ASN GLN ASN CYS LYS ALA GLU PHE CYS TRP VAL SEQRES 4 A 60 CYS LEU GLY PRO TRP GLU PRO HIS GLY SER ALA TRP TYR SEQRES 5 A 60 ASN CYS ASN ARG TYR ASN GLU PHE HET ZN A 71 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLN A 40 ALA A 44 5 5 HELIX 2 2 TRP A 54 SER A 59 5 6 LINK ZN ZN A 71 SG CYS A 19 1555 1555 2.54 LINK ZN ZN A 71 SG CYS A 22 1555 1555 2.48 LINK ZN ZN A 71 SG CYS A 37 1555 1555 2.48 LINK ZN ZN A 71 SG CYS A 42 1555 1555 2.61 SITE 1 AC1 5 CYS A 19 CYS A 22 CYS A 37 CYS A 42 SITE 2 AC1 5 PHE A 46 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 326 0 1 2 0 0 2 6 0 0 0 5 END