HEADER ANTIBIOTIC BIOSYNTHESIS 03-AUG-04 1W4Z TITLE STRUCTURE OF ACTINORHODIN POLYKETIDE (ACTIII) REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOACYL REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACTIII KETOREDUCTASE; COMPND 5 EC: 1.3.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 STRAIN: A3(2) / M145; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS TYPE II POLYKETIDE SYNTHESIS, KETOREDUCTASE, SDR, ACP KEYWDS 2 BINDING, ANTIBIOTIC BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.T.HADFIELD,C.LIMPKIN,W.TEARTASIN,T.J.SIMPSON,J.CROSBY, AUTHOR 2 M.P.CRUMP REVDAT 2 24-FEB-09 1W4Z 1 VERSN REVDAT 1 10-DEC-04 1W4Z 0 JRNL AUTH A.T.HADFIELD,C.LIMPKIN,W.TEARTASIN,T.J.SIMPSON, JRNL AUTH 2 J.CROSBY,M.P.CRUMP JRNL TITL THE CRYSTAL STRUCTURE OF THE ACTIII ACTINORHODIN JRNL TITL 2 POLYKETIDE REDUCTASE; PROPOSED MECHANISM FOR ACP JRNL TITL 3 AND POLYKETIDE BINDING JRNL REF STRUCTURE V. 12 1865 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15458634 JRNL DOI 10.1016/J.STR.2004.08.002 REMARK 2 REMARK 2 RESOLUTION. 2.5 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1852 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3790 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.64000 REMARK 3 B22 (A**2) : 1.64000 REMARK 3 B33 (A**2) : -2.46000 REMARK 3 B12 (A**2) : 0.82000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.300 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3963 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5382 ; 1.715 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 517 ; 3.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 651 ;18.810 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 637 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2931 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1837 ; 0.236 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 267 ; 0.143 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.231 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.221 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2569 ; 1.232 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4065 ; 2.408 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1394 ; 4.092 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1317 ; 6.495 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. RESIDUES B203-B209 WERE DISORDERED REMARK 4 REMARK 4 1W4Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-04. REMARK 100 THE PDBE ID CODE IS EBI-20649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25371 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 30.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1EDO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.3 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOTHER LIQUOR 5 MG ML-1 REMARK 280 PROTEIN AND 5 MM NADP IN 25 MM PHOSPHATE BUFFER PH 8 REMARK 280 WITH 10%(V/V) GLYCEROL RESERVOIR SOLUTION 4.0-4.4 M REMARK 280 SODIUM FORMATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.88200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.94100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.94100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.88200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.94059 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 SER B 203 REMARK 465 ASP B 204 REMARK 465 ILE B 205 REMARK 465 TRP B 206 REMARK 465 GLU B 207 REMARK 465 VAL B 208 REMARK 465 SER B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 201 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 202 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 211 CG CD OE1 OE2 REMARK 470 GLU B 212 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 24 - OE2 GLU A 49 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 NH2 ARG B 51 O1X NAP A 1262 2654 2.12 REMARK 500 O1X NAP A 1262 NH2 ARG B 51 3665 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 31 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP B 58 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 127 -89.50 -76.90 REMARK 500 ALA A 143 -115.91 -99.03 REMARK 500 SER A 144 164.87 176.63 REMARK 500 LYS B 127 -84.59 -87.30 REMARK 500 ALA B 143 -113.15 -104.61 REMARK 500 SER B 144 162.79 176.05 REMARK 500 HIS B 201 -79.05 -72.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A1263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A1264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A1265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A1266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B1263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B1264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B1265 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B1266 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B1267 REMARK 999 REMARK 999 SEQUENCE REMARK 999 MODIFIED BY ADDITION OF N-TERMINAL HIS TAG DBREF 1W4Z A -19 0 PDB 1W4Z 1W4Z -19 0 DBREF 1W4Z A 1 261 UNP P16544 ACT3_STRCO 1 261 DBREF 1W4Z B -19 0 PDB 1W4Z 1W4Z -19 0 DBREF 1W4Z B 1 261 UNP P16544 ACT3_STRCO 1 261 SEQRES 1 A 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 281 LEU VAL PRO ARG GLY SER HIS MET ALA THR GLN ASP SER SEQRES 3 A 281 GLU VAL ALA LEU VAL THR GLY ALA THR SER GLY ILE GLY SEQRES 4 A 281 LEU GLU ILE ALA ARG ARG LEU GLY LYS GLU GLY LEU ARG SEQRES 5 A 281 VAL PHE VAL CYS ALA ARG GLY GLU GLU GLY LEU ARG THR SEQRES 6 A 281 THR LEU LYS GLU LEU ARG GLU ALA GLY VAL GLU ALA ASP SEQRES 7 A 281 GLY ARG THR CYS ASP VAL ARG SER VAL PRO GLU ILE GLU SEQRES 8 A 281 ALA LEU VAL ALA ALA VAL VAL GLU ARG TYR GLY PRO VAL SEQRES 9 A 281 ASP VAL LEU VAL ASN ASN ALA GLY ARG PRO GLY GLY GLY SEQRES 10 A 281 ALA THR ALA GLU LEU ALA ASP GLU LEU TRP LEU ASP VAL SEQRES 11 A 281 VAL GLU THR ASN LEU THR GLY VAL PHE ARG VAL THR LYS SEQRES 12 A 281 GLN VAL LEU LYS ALA GLY GLY MET LEU GLU ARG GLY THR SEQRES 13 A 281 GLY ARG ILE VAL ASN ILE ALA SER THR GLY GLY LYS GLN SEQRES 14 A 281 GLY VAL VAL HIS ALA ALA PRO TYR SER ALA SER LYS HIS SEQRES 15 A 281 GLY VAL VAL GLY PHE THR LYS ALA LEU GLY LEU GLU LEU SEQRES 16 A 281 ALA ARG THR GLY ILE THR VAL ASN ALA VAL CYS PRO GLY SEQRES 17 A 281 PHE VAL GLU THR PRO MET ALA ALA SER VAL ARG GLU HIS SEQRES 18 A 281 TYR SER ASP ILE TRP GLU VAL SER THR GLU GLU ALA PHE SEQRES 19 A 281 ASP ARG ILE THR ALA ARG VAL PRO ILE GLY ARG TYR VAL SEQRES 20 A 281 GLN PRO SER GLU VAL ALA GLU MET VAL ALA TYR LEU ILE SEQRES 21 A 281 GLY PRO GLY ALA ALA ALA VAL THR ALA GLN ALA LEU ASN SEQRES 22 A 281 VAL CYS GLY GLY LEU GLY ASN TYR SEQRES 1 B 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 281 LEU VAL PRO ARG GLY SER HIS MET ALA THR GLN ASP SER SEQRES 3 B 281 GLU VAL ALA LEU VAL THR GLY ALA THR SER GLY ILE GLY SEQRES 4 B 281 LEU GLU ILE ALA ARG ARG LEU GLY LYS GLU GLY LEU ARG SEQRES 5 B 281 VAL PHE VAL CYS ALA ARG GLY GLU GLU GLY LEU ARG THR SEQRES 6 B 281 THR LEU LYS GLU LEU ARG GLU ALA GLY VAL GLU ALA ASP SEQRES 7 B 281 GLY ARG THR CYS ASP VAL ARG SER VAL PRO GLU ILE GLU SEQRES 8 B 281 ALA LEU VAL ALA ALA VAL VAL GLU ARG TYR GLY PRO VAL SEQRES 9 B 281 ASP VAL LEU VAL ASN ASN ALA GLY ARG PRO GLY GLY GLY SEQRES 10 B 281 ALA THR ALA GLU LEU ALA ASP GLU LEU TRP LEU ASP VAL SEQRES 11 B 281 VAL GLU THR ASN LEU THR GLY VAL PHE ARG VAL THR LYS SEQRES 12 B 281 GLN VAL LEU LYS ALA GLY GLY MET LEU GLU ARG GLY THR SEQRES 13 B 281 GLY ARG ILE VAL ASN ILE ALA SER THR GLY GLY LYS GLN SEQRES 14 B 281 GLY VAL VAL HIS ALA ALA PRO TYR SER ALA SER LYS HIS SEQRES 15 B 281 GLY VAL VAL GLY PHE THR LYS ALA LEU GLY LEU GLU LEU SEQRES 16 B 281 ALA ARG THR GLY ILE THR VAL ASN ALA VAL CYS PRO GLY SEQRES 17 B 281 PHE VAL GLU THR PRO MET ALA ALA SER VAL ARG GLU HIS SEQRES 18 B 281 TYR SER ASP ILE TRP GLU VAL SER THR GLU GLU ALA PHE SEQRES 19 B 281 ASP ARG ILE THR ALA ARG VAL PRO ILE GLY ARG TYR VAL SEQRES 20 B 281 GLN PRO SER GLU VAL ALA GLU MET VAL ALA TYR LEU ILE SEQRES 21 B 281 GLY PRO GLY ALA ALA ALA VAL THR ALA GLN ALA LEU ASN SEQRES 22 B 281 VAL CYS GLY GLY LEU GLY ASN TYR HET NAP A1262 48 HET NAP B1262 48 HET FMT A1263 3 HET FMT A1264 3 HET FMT A1265 3 HET FMT A1266 3 HET FMT B1263 3 HET FMT B1264 3 HET FMT B1265 3 HET FMT B1266 3 HET FMT B1267 3 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NAP PHOSPHATE HETNAM FMT FORMIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 FMT 9(C H2 O2) FORMUL 14 HOH *42(H2 O1) HELIX 1 1 SER A 16 GLU A 29 1 14 HELIX 2 2 GLY A 39 ALA A 53 1 15 HELIX 3 3 SER A 66 TYR A 81 1 16 HELIX 4 4 ALA A 98 LEU A 102 5 5 HELIX 5 5 ALA A 103 LEU A 115 1 13 HELIX 6 6 LEU A 115 LYS A 127 1 13 HELIX 7 7 GLY A 130 GLY A 135 1 6 HELIX 8 8 SER A 144 LYS A 148 5 5 HELIX 9 9 ALA A 154 ALA A 176 1 23 HELIX 10 10 THR A 192 TRP A 206 1 15 HELIX 11 11 SER A 209 ALA A 219 1 11 HELIX 12 12 GLN A 228 ILE A 240 1 13 HELIX 13 13 GLY A 241 ALA A 245 5 5 HELIX 14 14 SER B 16 GLU B 29 1 14 HELIX 15 15 GLY B 39 ALA B 53 1 15 HELIX 16 16 SER B 66 TYR B 81 1 16 HELIX 17 17 ALA B 98 LEU B 102 5 5 HELIX 18 18 ALA B 103 LEU B 115 1 13 HELIX 19 19 LEU B 115 LYS B 127 1 13 HELIX 20 20 GLY B 130 GLY B 135 1 6 HELIX 21 21 SER B 144 LYS B 148 5 5 HELIX 22 22 ALA B 154 ALA B 176 1 23 HELIX 23 23 THR B 192 TYR B 202 1 11 HELIX 24 24 THR B 210 VAL B 221 1 12 HELIX 25 25 GLN B 228 GLY B 241 1 14 HELIX 26 26 PRO B 242 ALA B 245 5 4 SHEET 1 AA 7 ALA A 57 THR A 61 0 SHEET 2 AA 7 ARG A 32 ALA A 37 1 O VAL A 33 N ASP A 58 SHEET 3 AA 7 VAL A 8 THR A 12 1 O ALA A 9 N PHE A 34 SHEET 4 AA 7 VAL A 86 ASN A 89 1 O VAL A 86 N LEU A 10 SHEET 5 AA 7 GLY A 137 ILE A 142 1 O ARG A 138 N LEU A 87 SHEET 6 AA 7 ILE A 180 PRO A 187 1 O THR A 181 N ILE A 139 SHEET 7 AA 7 ALA A 251 VAL A 254 1 O LEU A 252 N CYS A 186 SHEET 1 BA 7 ALA B 57 THR B 61 0 SHEET 2 BA 7 ARG B 32 ALA B 37 1 O VAL B 33 N ASP B 58 SHEET 3 BA 7 VAL B 8 VAL B 11 1 O ALA B 9 N PHE B 34 SHEET 4 BA 7 VAL B 86 ASN B 89 1 O VAL B 86 N LEU B 10 SHEET 5 BA 7 GLY B 137 ILE B 142 1 O ARG B 138 N LEU B 87 SHEET 6 BA 7 ILE B 180 PRO B 187 1 O THR B 181 N ILE B 139 SHEET 7 BA 7 ALA B 251 VAL B 254 1 O LEU B 252 N CYS B 186 SITE 1 AC1 27 GLY A 13 THR A 15 SER A 16 GLY A 17 SITE 2 AC1 27 ILE A 18 ARG A 38 GLY A 39 CYS A 62 SITE 3 AC1 27 ASP A 63 VAL A 64 ASN A 90 GLY A 92 SITE 4 AC1 27 ILE A 142 ALA A 143 SER A 144 TYR A 157 SITE 5 AC1 27 LYS A 161 PRO A 187 GLY A 188 VAL A 190 SITE 6 AC1 27 THR A 192 PRO A 193 MET A 194 FMT A1264 SITE 7 AC1 27 HOH A2001 HOH A2021 ARG B 51 SITE 1 AC2 26 GLY B 13 THR B 15 SER B 16 GLY B 17 SITE 2 AC2 26 ILE B 18 ARG B 38 GLY B 39 CYS B 62 SITE 3 AC2 26 ASP B 63 VAL B 64 ASN B 90 ALA B 91 SITE 4 AC2 26 ILE B 142 ALA B 143 SER B 144 TYR B 157 SITE 5 AC2 26 LYS B 161 PRO B 187 GLY B 188 PHE B 189 SITE 6 AC2 26 VAL B 190 THR B 192 PRO B 193 MET B 194 SITE 7 AC2 26 FMT B1266 HOH B2021 SITE 1 AC3 3 THR A 61 CYS A 62 GLU A 69 SITE 1 AC4 2 TYR A 157 NAP A1262 SITE 1 AC5 4 PRO A 94 GLY A 95 TYR A 157 HIS B 0 SITE 1 AC6 5 PHE A 189 ALA A 195 VAL A 198 ILE A 217 SITE 2 AC6 5 TYR A 226 SITE 1 AC7 3 ARG B 60 THR B 61 GLU B 69 SITE 1 AC8 4 ARG A 38 ARG A 65 ARG A 93 FMT B1265 SITE 1 AC9 5 ARG A 65 ARG B 32 ARG B 80 TYR B 81 SITE 2 AC9 5 FMT B1264 SITE 1 BC1 1 NAP B1262 SITE 1 BC2 4 ALA B 176 GLY B 179 ILE B 180 ALA B 245 CRYST1 103.430 103.430 122.823 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009668 0.005582 0.000000 0.00000 SCALE2 0.000000 0.011164 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008142 0.00000 MASTER 435 0 11 26 14 0 25 6 0 0 0 44 END