HEADER ISOMERASE 28-JUN-06 1VS3 TITLE CRYSTAL STRUCTURE OF THE TRNA PSEUDOURIDINE SYNTHASE TRUA FROM THERMUS TITLE 2 THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA PSEUDOURIDINE SYNTHASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-249; COMPND 5 SYNONYM: TRNA-URIDINE ISOMERASE I, TRNA PSEUDOURIDYLATE SYNTHASE I; COMPND 6 EC: 5.4.99.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TRUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS TRUA, PSEUDOURIDINE SYNTHASE, TRNA MODIFICATION, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.DONG,Y.BESSHO,M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 06-NOV-19 1VS3 1 JRNL REVDAT 3 13-JUL-11 1VS3 1 VERSN REVDAT 2 24-FEB-09 1VS3 1 VERSN REVDAT 1 12-DEC-06 1VS3 0 JRNL AUTH X.DONG,Y.BESSHO,R.SHIBATA,M.NISHIMOTO,M.SHIROUZU, JRNL AUTH 2 S.KURAMITSU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF TRNA PSEUDOURIDINE SYNTHASE TRUA FROM JRNL TITL 2 THERMUS THERMOPHILUS HB8. JRNL REF RNA BIOL. V. 3 115 2006 JRNL REFN ESSN 1555-8584 JRNL PMID 17114947 JRNL DOI 10.4161/RNA.3.3.3286 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2374361.470 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1692 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3975 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 185 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 565 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.37000 REMARK 3 B22 (A**2) : 2.37000 REMARK 3 B33 (A**2) : -4.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.610 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.350 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.260 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.070 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.950 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 78.78 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000003003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-05; 30-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 298; 298 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; SPRING-8 REMARK 200 BEAMLINE : AR-NW12A; BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924, 0.97954, 0.9700; 1.000 REMARK 200 MONOCHROMATOR : DOUBLE FLAT SI (III) CRYSTALS; REMARK 200 DOUBLE FLAT SI (III) CRYSTALS REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33977 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 6% PEG2000, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.99500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.76500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.99750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.76500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.99250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.76500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.99750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.76500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.99250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 331 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 20 OE1 GLU A 33 1.97 REMARK 500 OG1 THR A 161 O HOH A 527 2.07 REMARK 500 O PRO A 71 O HOH A 517 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N ALA B 171 O HOH A 524 4454 1.39 REMARK 500 O ARG B 213 O HOH A 486 4454 1.39 REMARK 500 C GLU B 170 O HOH A 524 4454 1.57 REMARK 500 CA ALA B 171 O HOH A 524 4454 1.63 REMARK 500 O PRO B 214 O HOH A 486 4454 1.66 REMARK 500 O ALA B 139 O HOH A 515 4454 1.77 REMARK 500 O ALA B 139 O HOH A 460 4454 1.80 REMARK 500 O ARG B 213 O HOH A 533 4454 1.84 REMARK 500 O GLU B 170 O HOH A 524 4454 1.85 REMARK 500 O LYS B 212 O HOH A 528 4454 1.86 REMARK 500 C PRO B 214 O HOH A 486 4454 1.87 REMARK 500 O GLY A 211 O HOH B 416 5455 1.95 REMARK 500 C ARG B 213 O HOH A 486 4454 2.02 REMARK 500 CB ALA B 171 O HOH A 524 4454 2.05 REMARK 500 NH1 ARG A 50 O HOH B 452 3555 2.07 REMARK 500 N ALA B 171 O HOH A 464 4454 2.14 REMARK 500 CB PRO A 214 O HOH B 426 5455 2.14 REMARK 500 CG GLU A 216 O HOH B 426 5455 2.15 REMARK 500 CA PRO B 214 O HOH A 486 4454 2.16 REMARK 500 O LEU B 135 O HOH A 527 4454 2.16 REMARK 500 OE2 GLU A 243 O HOH A 476 4454 2.17 REMARK 500 N ALA B 143 O HOH A 515 4454 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 171 CA ALA B 171 CB 0.254 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 161 N - CA - C ANGL. DEV. = -21.0 DEGREES REMARK 500 GLY B 164 N - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 PRO B 214 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 -70.70 -77.87 REMARK 500 SER A 68 179.11 -57.01 REMARK 500 ILE A 70 127.99 -36.58 REMARK 500 ALA A 171 92.17 -162.08 REMARK 500 ARG A 213 165.93 -23.14 REMARK 500 PRO A 214 -172.09 -49.79 REMARK 500 SER A 217 -12.95 -48.62 REMARK 500 ARG B 23 39.59 74.59 REMARK 500 SER B 68 174.78 -52.55 REMARK 500 LYS B 158 -117.64 -103.32 REMARK 500 GLU B 159 26.89 -67.49 REMARK 500 ARG B 162 167.15 157.70 REMARK 500 ALA B 171 90.36 -163.85 REMARK 500 LEU B 210 -118.41 -101.47 REMARK 500 LYS B 212 121.30 -175.75 REMARK 500 ARG B 213 126.77 -15.38 REMARK 500 PRO B 214 172.10 -27.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000910.1 RELATED DB: TARGETDB DBREF 1VS3 A 1 249 UNP Q5SHU9 TRUA_THET8 1 249 DBREF 1VS3 B 1 249 UNP Q5SHU9 TRUA_THET8 1 249 SEQRES 1 A 249 MET ARG ARG LEU LEU LEU LEU CYS GLU TYR ASP GLY THR SEQRES 2 A 249 LEU PHE ALA GLY LEU GLN ARG GLN GLY ARG GLY LEU ARG SEQRES 3 A 249 THR VAL GLN GLY GLU LEU GLU ARG ALA LEU PRO GLY ILE SEQRES 4 A 249 GLY ALA LEU PRO LYS ALA VAL ALA ALA GLY ARG THR ASP SEQRES 5 A 249 ALA GLY VAL HIS ALA LEU ALA MET PRO PHE HIS VAL ASP SEQRES 6 A 249 VAL GLU SER ALA ILE PRO VAL GLU LYS VAL PRO GLU ALA SEQRES 7 A 249 LEU ASN ARG LEU LEU PRO GLU ASP LEU LYS VAL VAL GLY SEQRES 8 A 249 ALA ARG GLU VAL ALA PRO ASP PHE HIS ALA ARG LYS ASP SEQRES 9 A 249 ALA LEU TRP ARG ALA TYR ARG TYR ARG ILE LEU VAL ARG SEQRES 10 A 249 PRO HIS PRO SER PRO LEU LEU ARG HIS ARG ALA LEU TRP SEQRES 11 A 249 VAL ARG ARG PRO LEU ASP LEU GLU ALA MET GLU GLU ALA SEQRES 12 A 249 LEU SER LEU LEU LEU GLY ARG HIS ASN PHE LEU GLY PHE SEQRES 13 A 249 ALA LYS GLU GLU THR ARG PRO GLY GLU ARG GLU LEU LEU SEQRES 14 A 249 GLU ALA ARG LEU GLN VAL ALA GLU GLY GLU ALA GLY LEU SEQRES 15 A 249 GLU VAL ARG LEU TYR PHE ARG GLY LYS SER PHE LEU ARG SEQRES 16 A 249 GLY GLN VAL ARG GLY MET VAL GLY THR LEU LEU GLU VAL SEQRES 17 A 249 GLY LEU GLY LYS ARG PRO PRO GLU SER LEU LYS ALA ILE SEQRES 18 A 249 LEU LYS THR ALA ASP ARG ARG LEU ALA GLY PRO THR ALA SEQRES 19 A 249 PRO ALA HIS GLY LEU TYR PHE VAL GLU ALA ALA TYR PRO SEQRES 20 A 249 GLU GLU SEQRES 1 B 249 MET ARG ARG LEU LEU LEU LEU CYS GLU TYR ASP GLY THR SEQRES 2 B 249 LEU PHE ALA GLY LEU GLN ARG GLN GLY ARG GLY LEU ARG SEQRES 3 B 249 THR VAL GLN GLY GLU LEU GLU ARG ALA LEU PRO GLY ILE SEQRES 4 B 249 GLY ALA LEU PRO LYS ALA VAL ALA ALA GLY ARG THR ASP SEQRES 5 B 249 ALA GLY VAL HIS ALA LEU ALA MET PRO PHE HIS VAL ASP SEQRES 6 B 249 VAL GLU SER ALA ILE PRO VAL GLU LYS VAL PRO GLU ALA SEQRES 7 B 249 LEU ASN ARG LEU LEU PRO GLU ASP LEU LYS VAL VAL GLY SEQRES 8 B 249 ALA ARG GLU VAL ALA PRO ASP PHE HIS ALA ARG LYS ASP SEQRES 9 B 249 ALA LEU TRP ARG ALA TYR ARG TYR ARG ILE LEU VAL ARG SEQRES 10 B 249 PRO HIS PRO SER PRO LEU LEU ARG HIS ARG ALA LEU TRP SEQRES 11 B 249 VAL ARG ARG PRO LEU ASP LEU GLU ALA MET GLU GLU ALA SEQRES 12 B 249 LEU SER LEU LEU LEU GLY ARG HIS ASN PHE LEU GLY PHE SEQRES 13 B 249 ALA LYS GLU GLU THR ARG PRO GLY GLU ARG GLU LEU LEU SEQRES 14 B 249 GLU ALA ARG LEU GLN VAL ALA GLU GLY GLU ALA GLY LEU SEQRES 15 B 249 GLU VAL ARG LEU TYR PHE ARG GLY LYS SER PHE LEU ARG SEQRES 16 B 249 GLY GLN VAL ARG GLY MET VAL GLY THR LEU LEU GLU VAL SEQRES 17 B 249 GLY LEU GLY LYS ARG PRO PRO GLU SER LEU LYS ALA ILE SEQRES 18 B 249 LEU LYS THR ALA ASP ARG ARG LEU ALA GLY PRO THR ALA SEQRES 19 B 249 PRO ALA HIS GLY LEU TYR PHE VAL GLU ALA ALA TYR PRO SEQRES 20 B 249 GLU GLU FORMUL 3 HOH *565(H2 O) HELIX 1 1 GLY A 12 PHE A 15 5 4 HELIX 2 2 THR A 27 LEU A 36 1 10 HELIX 3 3 PRO A 37 GLY A 40 5 4 HELIX 4 4 PRO A 71 GLU A 73 5 3 HELIX 5 5 LYS A 74 LEU A 83 1 10 HELIX 6 6 ASP A 136 LEU A 148 1 13 HELIX 7 7 LEU A 154 ALA A 157 5 4 HELIX 8 8 GLY A 196 GLY A 211 1 16 HELIX 9 9 PRO A 214 GLU A 216 5 3 HELIX 10 10 SER A 217 ALA A 225 1 9 HELIX 11 11 ASP A 226 ALA A 230 5 5 HELIX 12 12 PRO A 235 HIS A 237 5 3 HELIX 13 13 THR B 27 LEU B 36 1 10 HELIX 14 14 PRO B 37 GLY B 40 5 4 HELIX 15 15 PRO B 71 GLU B 73 5 3 HELIX 16 16 LYS B 74 LEU B 83 1 10 HELIX 17 17 ASP B 136 LEU B 148 1 13 HELIX 18 18 LEU B 154 ALA B 157 5 4 HELIX 19 19 GLY B 196 LEU B 210 1 15 HELIX 20 20 GLU B 216 ALA B 225 1 10 HELIX 21 21 ASP B 226 ALA B 230 5 5 HELIX 22 22 PRO B 235 HIS B 237 5 3 SHEET 1 A 5 VAL A 46 ALA A 47 0 SHEET 2 A 5 HIS A 56 VAL A 66 -1 O HIS A 63 N VAL A 46 SHEET 3 A 5 LEU A 239 ALA A 245 1 O PHE A 241 N LEU A 58 SHEET 4 A 5 TRP A 107 VAL A 116 -1 N ARG A 111 O TYR A 240 SHEET 5 A 5 LEU A 129 VAL A 131 1 O LEU A 129 N ARG A 113 SHEET 1 B 8 LEU A 87 VAL A 95 0 SHEET 2 B 8 ARG A 2 TYR A 10 -1 N LEU A 5 O ARG A 93 SHEET 3 B 8 HIS A 56 VAL A 66 -1 O PHE A 62 N LEU A 6 SHEET 4 B 8 LEU A 239 ALA A 245 1 O PHE A 241 N LEU A 58 SHEET 5 B 8 TRP A 107 VAL A 116 -1 N ARG A 111 O TYR A 240 SHEET 6 B 8 LEU A 182 GLY A 190 -1 O VAL A 184 N ILE A 114 SHEET 7 B 8 GLU A 165 GLU A 177 -1 N ALA A 176 O GLU A 183 SHEET 8 B 8 GLY A 149 ASN A 152 -1 N HIS A 151 O ARG A 166 SHEET 1 C 5 VAL B 46 ALA B 47 0 SHEET 2 C 5 HIS B 56 VAL B 66 -1 O HIS B 63 N VAL B 46 SHEET 3 C 5 LEU B 239 ALA B 245 1 O PHE B 241 N HIS B 56 SHEET 4 C 5 TRP B 107 VAL B 116 -1 N ALA B 109 O VAL B 242 SHEET 5 C 5 LEU B 129 VAL B 131 1 O LEU B 129 N LEU B 115 SHEET 1 D 8 LEU B 87 VAL B 95 0 SHEET 2 D 8 ARG B 2 TYR B 10 -1 N LEU B 7 O GLY B 91 SHEET 3 D 8 HIS B 56 VAL B 66 -1 O PHE B 62 N LEU B 6 SHEET 4 D 8 LEU B 239 ALA B 245 1 O PHE B 241 N HIS B 56 SHEET 5 D 8 TRP B 107 VAL B 116 -1 N ALA B 109 O VAL B 242 SHEET 6 D 8 LEU B 182 GLY B 190 -1 O GLY B 190 N ARG B 108 SHEET 7 D 8 GLU B 165 GLU B 177 -1 N GLN B 174 O ARG B 185 SHEET 8 D 8 GLY B 149 ASN B 152 -1 N HIS B 151 O ARG B 166 CRYST1 91.530 91.530 163.990 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006098 0.00000 MASTER 377 0 0 22 26 0 0 6 0 0 0 40 END