HEADER UNKNOWN FUNCTION 23-NOV-04 1VPY TITLE CRYSTAL STRUCTURE OF A DUF72 FAMILY PROTEIN (EF0366) FROM ENTEROCOCCUS TITLE 2 FAECALIS V583 AT 2.52 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (HYPOTHETICAL PROTEIN EF0366); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 GENE: EF0366; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TIM ALPHA/BETA BARREL FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 11-OCT-17 1VPY 1 REMARK REVDAT 4 13-JUL-11 1VPY 1 VERSN REVDAT 3 28-JUL-10 1VPY 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 1VPY 1 VERSN REVDAT 1 07-DEC-04 1VPY 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (EF0366) FROM JRNL TITL 2 ENTEROCOCCUS FAECALIS V583 AT 2.52 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 930 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 53.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.01000 REMARK 3 B22 (A**2) : -2.01000 REMARK 3 B33 (A**2) : 3.02000 REMARK 3 B12 (A**2) : -1.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.389 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.487 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2061 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2799 ; 1.306 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 6.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;37.524 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;15.235 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;23.097 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1594 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 929 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1396 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 92 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1281 ; 0.383 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2019 ; 0.614 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 899 ; 1.246 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 780 ; 1.653 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8536 25.6633 38.6457 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.1276 REMARK 3 T33: -0.0913 T12: -0.0589 REMARK 3 T13: 0.0177 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 14.1434 L22: 34.5063 REMARK 3 L33: 7.0195 L12: -21.8518 REMARK 3 L13: 5.9860 L23: -7.4206 REMARK 3 S TENSOR REMARK 3 S11: -1.4270 S12: -1.2573 S13: 0.1747 REMARK 3 S21: 3.5434 S22: 1.1018 S23: 0.8008 REMARK 3 S31: -0.9678 S32: -0.4228 S33: 0.3252 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7578 32.6765 24.3682 REMARK 3 T TENSOR REMARK 3 T11: -0.0715 T22: -0.0981 REMARK 3 T33: -0.1183 T12: 0.0304 REMARK 3 T13: -0.0163 T23: 0.1006 REMARK 3 L TENSOR REMARK 3 L11: 3.8112 L22: 5.2299 REMARK 3 L33: 1.8039 L12: 0.0340 REMARK 3 L13: -0.2925 L23: 0.0751 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: 0.2921 S13: 0.1789 REMARK 3 S21: -0.3970 S22: -0.2142 S23: -0.5659 REMARK 3 S31: -0.0664 S32: 0.0552 S33: 0.0869 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8819 24.3257 31.8630 REMARK 3 T TENSOR REMARK 3 T11: -0.0867 T22: -0.0906 REMARK 3 T33: -0.1608 T12: -0.0383 REMARK 3 T13: -0.0355 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 9.7998 L22: 7.8959 REMARK 3 L33: 2.0100 L12: -3.9190 REMARK 3 L13: 2.0719 L23: -1.1067 REMARK 3 S TENSOR REMARK 3 S11: 0.1650 S12: -0.3212 S13: -0.2092 REMARK 3 S21: 0.0539 S22: -0.1933 S23: 0.6452 REMARK 3 S31: 0.0778 S32: -0.0638 S33: 0.0283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1) HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2) ELECTRON DENSITY IN TWO REGIONS, RESIDUES REMARK 3 11-19 AND 202-209 IS AMBIGUOUS AND THE STRUCTURE WAS NOT MODELED REMARK 3 IN THESE REGIONS. 3) THE ELECTRON DENSITY FOR THE SIDECHAIN OF REMARK 3 CYS 71 INDICATES AN UNIDENTIFIED COVALENT MODIFICATION. 4) THE REMARK 3 CRYSTALLIZATION CONTAINS 0.2M ZINC ACETATE; THEREFORE, SEVERAL REMARK 3 ZN IONS WERE MODELED INTO ELECTRON DENSITY WITHIN COORDINATION REMARK 3 DISTANCE OF POTENTIAL SIDECHAIN LIGANDS (I.E. HISTIDINE AND REMARK 3 GLUTAMIC ACID). REMARK 4 REMARK 4 1VPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000002046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979694, 0.979571, 1.019859 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4 4.2, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13332 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 28.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.18000 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.01038 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.0% PEG-3000, 0.2M ZN(OAC)2, 0.1M REMARK 280 ACETATE, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE REMARK 280 277K, PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.87133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.43567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.15350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.71783 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.58917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLU A 11 REMARK 465 HIS A 12 REMARK 465 ASP A 13 REMARK 465 TYR A 14 REMARK 465 LEU A 15 REMARK 465 THR A 16 REMARK 465 GLY A 17 REMARK 465 LYS A 18 REMARK 465 LYS A 19 REMARK 465 ARG A 20 REMARK 465 LEU A 202 REMARK 465 ALA A 203 REMARK 465 ASN A 204 REMARK 465 ASP A 205 REMARK 465 ALA A 206 REMARK 465 GLU A 207 REMARK 465 TRP A 208 REMARK 465 ARG A 209 REMARK 465 TYR A 266 REMARK 465 ASP A 267 REMARK 465 ASP A 268 REMARK 465 LEU A 269 REMARK 465 ASN A 270 REMARK 465 PRO A 271 REMARK 465 LYS A 272 REMARK 465 GLN A 273 REMARK 465 LEU A 274 REMARK 465 ASP A 275 REMARK 465 LEU A 276 REMARK 465 PHE A 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 53 CD CE NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLN A 146 CD OE1 NE2 REMARK 470 PHE A 149 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 231 CD CE NZ REMARK 470 LYS A 237 CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -2 94.71 -62.92 REMARK 500 GLU A 74 47.24 -87.53 REMARK 500 CYS A 115 93.17 -65.94 REMARK 500 LYS A 131 -116.29 33.02 REMARK 500 PRO A 186 -4.28 -58.95 REMARK 500 LEU A 188 127.78 -170.86 REMARK 500 ARG A 212 36.38 -95.21 REMARK 500 SER A 247 116.44 66.53 REMARK 500 ASN A 263 72.74 13.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 279 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A -2 NE2 REMARK 620 2 HIS A 0 NE2 112.0 REMARK 620 3 ASP A 250 OD2 129.7 93.7 REMARK 620 4 HOH A 330 O 103.4 105.2 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 281 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 25 OE1 REMARK 620 2 HIS A 29 NE2 67.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 357242 RELATED DB: TARGETDB DBREF 1VPY A 1 277 GB 29375004 NP_814157 1 277 SEQADV 1VPY MSE A -11 GB 29375004 LEADER SEQUENCE SEQADV 1VPY GLY A -10 GB 29375004 LEADER SEQUENCE SEQADV 1VPY SER A -9 GB 29375004 LEADER SEQUENCE SEQADV 1VPY ASP A -8 GB 29375004 LEADER SEQUENCE SEQADV 1VPY LYS A -7 GB 29375004 LEADER SEQUENCE SEQADV 1VPY ILE A -6 GB 29375004 LEADER SEQUENCE SEQADV 1VPY HIS A -5 GB 29375004 LEADER SEQUENCE SEQADV 1VPY HIS A -4 GB 29375004 LEADER SEQUENCE SEQADV 1VPY HIS A -3 GB 29375004 LEADER SEQUENCE SEQADV 1VPY HIS A -2 GB 29375004 LEADER SEQUENCE SEQADV 1VPY HIS A -1 GB 29375004 LEADER SEQUENCE SEQADV 1VPY HIS A 0 GB 29375004 LEADER SEQUENCE SEQADV 1VPY MSE A 1 GB 29375004 MET 1 MODIFIED RESIDUE SEQADV 1VPY MSE A 35 GB 29375004 MET 35 MODIFIED RESIDUE SEQADV 1VPY MSE A 63 GB 29375004 MET 63 MODIFIED RESIDUE SEQADV 1VPY MSE A 85 GB 29375004 MET 85 MODIFIED RESIDUE SEQADV 1VPY MSE A 93 GB 29375004 MET 93 MODIFIED RESIDUE SEQADV 1VPY MSE A 153 GB 29375004 MET 153 MODIFIED RESIDUE SEQADV 1VPY MSE A 157 GB 29375004 MET 157 MODIFIED RESIDUE SEQADV 1VPY MSE A 232 GB 29375004 MET 232 MODIFIED RESIDUE SEQADV 1VPY MSE A 258 GB 29375004 MET 258 MODIFIED RESIDUE SEQRES 1 A 289 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 289 ILE ARG LEU GLY LEU THR SER PHE SER GLU HIS ASP TYR SEQRES 3 A 289 LEU THR GLY LYS LYS ARG SER THR LEU TYR GLU TYR ALA SEQRES 4 A 289 SER HIS LEU PRO LEU VAL GLU MSE ASP THR ALA TYR TYR SEQRES 5 A 289 GLY ILE PRO PRO LYS GLU ARG VAL ALA GLU TRP VAL LYS SEQRES 6 A 289 ALA VAL PRO GLU ASN PHE ARG PHE VAL MSE LYS VAL TYR SEQRES 7 A 289 SER GLY ILE SER CYS GLN GLY GLU TRP GLN THR TYR TYR SEQRES 8 A 289 ALA SER GLU GLU GLU MSE ILE THR ALA PHE LEU GLU SER SEQRES 9 A 289 MSE ALA PRO LEU ILE GLU SER LYS LYS LEU PHE ALA PHE SEQRES 10 A 289 LEU VAL GLN PHE SER GLY THR PHE GLY CYS THR LYS GLU SEQRES 11 A 289 ASN VAL ALA TYR LEU GLN LYS ILE ARG HIS TRP PHE LYS SEQRES 12 A 289 ASP LEU PRO ILE ALA ILE GLU LEU ARG ASN ASN SER TRP SEQRES 13 A 289 TYR GLN PRO ASN PHE VAL LYS GLN MSE LEU GLN PHE MSE SEQRES 14 A 289 LYS GLU ASN GLN PHE SER LEU VAL ILE VAL ASP GLU PRO SEQRES 15 A 289 GLN ILE PRO THR ASN PRO VAL PRO PHE TYR PRO TYR VAL SEQRES 16 A 289 THR ASN PRO ASN LEU VAL LEU PHE ARG PHE HIS GLY ARG SEQRES 17 A 289 ASN ALA ALA GLY TRP LEU ALA ASN ASP ALA GLU TRP ARG SEQRES 18 A 289 LYS LYS ARG THR LEU TYR HIS TYR ASN THR GLN GLU ILE SEQRES 19 A 289 ALA ASP LEU SER GLU ALA VAL LEU LYS MSE SER GLN GLU SEQRES 20 A 289 ALA LYS GLU VAL GLY VAL ILE PHE ASN ASN ASN SER GLY SEQRES 21 A 289 GLY ASP ALA ALA GLU ASN ALA LEU GLN MSE GLN LYS VAL SEQRES 22 A 289 LEU ASN LEU SER TYR ASP ASP LEU ASN PRO LYS GLN LEU SEQRES 23 A 289 ASP LEU PHE MODRES 1VPY MSE A 1 MET SELENOMETHIONINE MODRES 1VPY MSE A 35 MET SELENOMETHIONINE MODRES 1VPY MSE A 63 MET SELENOMETHIONINE MODRES 1VPY MSE A 85 MET SELENOMETHIONINE MODRES 1VPY MSE A 93 MET SELENOMETHIONINE MODRES 1VPY MSE A 153 MET SELENOMETHIONINE MODRES 1VPY MSE A 157 MET SELENOMETHIONINE MODRES 1VPY MSE A 232 MET SELENOMETHIONINE MODRES 1VPY MSE A 258 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 35 8 HET MSE A 63 8 HET MSE A 85 8 HET MSE A 93 8 HET MSE A 153 8 HET MSE A 157 8 HET MSE A 232 8 HET MSE A 258 8 HET ZN A 278 1 HET ZN A 279 1 HET ZN A 280 1 HET ZN A 281 1 HET UNL A 300 4 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM UNL UNKNOWN LIGAND FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 ZN 4(ZN 2+) FORMUL 7 HOH *37(H2 O) HELIX 1 1 THR A 22 LEU A 30 1 9 HELIX 2 2 ASP A 36 GLY A 41 1 6 HELIX 3 3 PRO A 44 ALA A 54 1 11 HELIX 4 4 GLU A 74 TYR A 78 5 5 HELIX 5 5 SER A 81 MSE A 93 1 13 HELIX 6 6 MSE A 93 GLU A 98 1 6 HELIX 7 7 THR A 116 PHE A 130 1 15 HELIX 8 8 ASN A 141 GLN A 146 5 6 HELIX 9 9 PHE A 149 ASN A 160 1 12 HELIX 10 10 ASN A 218 GLN A 234 1 17 HELIX 11 11 SER A 247 LEU A 262 1 16 SHEET 1 A 9 SER A 163 LEU A 164 0 SHEET 2 A 9 ILE A 135 GLU A 138 1 N ILE A 135 O SER A 163 SHEET 3 A 9 LEU A 102 GLN A 108 1 N PHE A 105 O ALA A 136 SHEET 4 A 9 ARG A 60 LYS A 64 1 N PHE A 61 O PHE A 103 SHEET 5 A 9 LEU A 32 MSE A 35 1 N VAL A 33 O VAL A 62 SHEET 6 A 9 MSE A 1 LEU A 6 1 N LEU A 6 O GLU A 34 SHEET 7 A 9 GLU A 238 PHE A 243 1 O VAL A 239 N MSE A 1 SHEET 8 A 9 VAL A 189 PHE A 193 1 N PHE A 191 O GLY A 240 SHEET 9 A 9 ILE A 166 ASP A 168 1 N ILE A 166 O LEU A 190 LINK SG CYS A 71 C1 UNL A 300 1555 1555 1.73 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.34 LINK C GLU A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N ASP A 36 1555 1555 1.33 LINK C VAL A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N LYS A 64 1555 1555 1.33 LINK C GLU A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N ILE A 86 1555 1555 1.33 LINK C SER A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N ALA A 94 1555 1555 1.33 LINK C GLN A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N LEU A 154 1555 1555 1.33 LINK C PHE A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N LYS A 158 1555 1555 1.33 LINK C LYS A 231 N MSE A 232 1555 1555 1.33 LINK C MSE A 232 N SER A 233 1555 1555 1.33 LINK C GLN A 257 N MSE A 258 1555 1555 1.34 LINK C MSE A 258 N GLN A 259 1555 1555 1.33 LINK ZN ZN A 278 NE2 HIS A 216 1555 1555 2.33 LINK ZN ZN A 279 NE2 HIS A -2 1555 1555 2.06 LINK ZN ZN A 279 NE2 HIS A 0 1555 1555 2.08 LINK ZN ZN A 280 NE2 HIS A 128 1555 1555 2.07 LINK ZN ZN A 281 OE1 GLU A 25 1555 1555 2.51 LINK ZN ZN A 281 NE2 HIS A 29 1555 1555 2.51 LINK ZN ZN A 279 OD2 ASP A 250 1555 5555 2.34 LINK ZN ZN A 279 O HOH A 330 1555 5555 2.34 SITE 1 AC1 2 HIS A 216 GLN A 257 SITE 1 AC2 5 HIS A -2 HIS A 0 SER A 247 ASP A 250 SITE 2 AC2 5 HOH A 330 SITE 1 AC3 1 HIS A 128 SITE 1 AC4 3 GLU A 25 HIS A 29 HOH A 337 SITE 1 AC5 1 CYS A 71 CRYST1 114.079 114.079 52.307 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008766 0.005061 0.000000 0.00000 SCALE2 0.000000 0.010122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019118 0.00000 MASTER 438 0 14 11 9 0 6 6 0 0 0 23 END