HEADER LIPID BINDING PROTEIN 18-NOV-04 1VPV TITLE CRYSTAL STRUCTURE OF A DEGV LIPID BINDING PROTEIN (TM1468) FROM TITLE 2 THERMOTOGA MARITIMA AT 2.45 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0230 PROTEIN TM1468; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1468; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DAK1/DEGV-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, LIPID BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 13-JUL-11 1VPV 1 VERSN REVDAT 3 23-MAR-11 1VPV 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 1VPV 1 VERSN REVDAT 1 07-DEC-04 1VPV 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UPF0230 PROTEIN TM1468 (TM1468) FROM JRNL TITL 2 THERMOTOGA MARITIMA AT 2.45 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 21579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1174 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1593 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 43.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.529 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.292 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4516 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4320 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6093 ; 1.549 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10047 ; 0.845 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 556 ; 6.044 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;35.628 ;24.022 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 834 ;15.947 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.625 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 701 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4867 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 852 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 910 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4299 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2195 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2647 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 149 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.139 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 23 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2864 ; 2.262 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1133 ; 0.584 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4533 ; 2.856 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 5.820 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1560 ; 8.135 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 284 4 REMARK 3 1 B 1 B 284 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 4208 ; 0.31 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 4208 ; 0.85 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): -30.7640 -0.1940 -9.3550 REMARK 3 T TENSOR REMARK 3 T11: -0.0302 T22: -0.1029 REMARK 3 T33: -0.0486 T12: 0.0048 REMARK 3 T13: -0.0101 T23: -0.0429 REMARK 3 L TENSOR REMARK 3 L11: 1.8955 L22: 1.0720 REMARK 3 L33: 1.6471 L12: 0.1524 REMARK 3 L13: -0.6987 L23: -0.4469 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.0606 S13: 0.0856 REMARK 3 S21: -0.1794 S22: -0.0414 S23: -0.0512 REMARK 3 S31: -0.0122 S32: 0.0160 S33: 0.0300 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 287 REMARK 3 ORIGIN FOR THE GROUP (A): -55.1800 -31.3450 12.0980 REMARK 3 T TENSOR REMARK 3 T11: -0.0492 T22: -0.0176 REMARK 3 T33: -0.0506 T12: -0.0207 REMARK 3 T13: 0.0129 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.6914 L22: 1.5294 REMARK 3 L33: 0.6287 L12: 0.5656 REMARK 3 L13: -0.0819 L23: -0.1062 REMARK 3 S TENSOR REMARK 3 S11: 0.0850 S12: -0.1447 S13: 0.0093 REMARK 3 S21: 0.0901 S22: -0.0639 S23: 0.1380 REMARK 3 S31: 0.0375 S32: -0.0770 S33: -0.0211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. PALMITIC ACID WAS PLACED BASED ON COMPARISON OF REMARK 3 RELATED MODELS. NO DENSITY FOR RESIDUES A177-181 AND B177-185. REMARK 3 VERY POOR DENSITY FOR A182-186. REMARK 4 REMARK 4 1VPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-04. REMARK 100 THE RCSB ID CODE IS RCSB002044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : SAGITALLY FOCUSING. 2ND CRYSTAL, REMARK 200 ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22755 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.453 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.090 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 13.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.89 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29300 REMARK 200 FOR SHELL : 4.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1MGP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CACODYLATE PH 6.5, 0.2M MG(OAC)2, REMARK 280 27.5% PEG-8000, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.93150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.62800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.62800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.96575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.62800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.62800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.89725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.62800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.62800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.96575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.62800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.62800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.89725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.93150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 SER A 177 REMARK 465 LYS A 178 REMARK 465 PHE A 179 REMARK 465 GLN A 180 REMARK 465 GLY A 181 REMARK 465 ARG A 288 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 SER B 177 REMARK 465 LYS B 178 REMARK 465 PHE B 179 REMARK 465 GLN B 180 REMARK 465 GLY B 181 REMARK 465 PHE B 182 REMARK 465 VAL B 183 REMARK 465 GLY B 184 REMARK 465 ASN B 185 REMARK 465 ARG B 288 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 19 CD OE1 OE2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 LYS A 73 CE NZ REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 LYS A 156 CD CE NZ REMARK 470 PHE A 182 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 186 CG CD1 CD2 REMARK 470 GLU A 240 CD OE1 OE2 REMARK 470 GLU A 245 CD OE1 OE2 REMARK 470 LYS B 2 CD CE NZ REMARK 470 ARG B 36 NE CZ NH1 NH2 REMARK 470 LYS B 62 CD CE NZ REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 LYS B 205 CE NZ REMARK 470 LYS B 210 CD CE NZ REMARK 470 GLU B 240 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 251 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 251 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 122 -143.63 58.95 REMARK 500 SER B 92 130.24 -37.08 REMARK 500 LEU B 120 -169.13 -127.87 REMARK 500 SER B 122 -139.48 58.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283326 RELATED DB: TARGETDB DBREF 1VPV A 1 288 UNP Q9X1H9 Y1468_THEMA 1 288 DBREF 1VPV B 1 288 UNP Q9X1H9 Y1468_THEMA 1 288 SEQADV 1VPV MSE A -11 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV GLY A -10 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV SER A -9 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV ASP A -8 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV LYS A -7 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV ILE A -6 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS A -5 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS A -4 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS A -3 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS A -2 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS A -1 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS A 0 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV MSE A 1 UNP Q9X1H9 MET 1 MODIFIED RESIDUE SEQADV 1VPV MSE A 18 UNP Q9X1H9 MET 18 MODIFIED RESIDUE SEQADV 1VPV MSE A 48 UNP Q9X1H9 MET 48 MODIFIED RESIDUE SEQADV 1VPV MSE A 135 UNP Q9X1H9 MET 135 MODIFIED RESIDUE SEQADV 1VPV MSE A 153 UNP Q9X1H9 MET 153 MODIFIED RESIDUE SEQADV 1VPV MSE A 264 UNP Q9X1H9 MET 264 MODIFIED RESIDUE SEQADV 1VPV MSE B -11 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV GLY B -10 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV SER B -9 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV ASP B -8 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV LYS B -7 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV ILE B -6 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS B -5 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS B -4 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS B -3 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS B -2 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS B -1 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV HIS B 0 UNP Q9X1H9 LEADER SEQUENCE SEQADV 1VPV MSE B 1 UNP Q9X1H9 MET 1 MODIFIED RESIDUE SEQADV 1VPV MSE B 18 UNP Q9X1H9 MET 18 MODIFIED RESIDUE SEQADV 1VPV MSE B 48 UNP Q9X1H9 MET 48 MODIFIED RESIDUE SEQADV 1VPV MSE B 135 UNP Q9X1H9 MET 135 MODIFIED RESIDUE SEQADV 1VPV MSE B 153 UNP Q9X1H9 MET 153 MODIFIED RESIDUE SEQADV 1VPV MSE B 264 UNP Q9X1H9 MET 264 MODIFIED RESIDUE SEQRES 1 A 300 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 300 LYS VAL LYS ILE LEU VAL ASP SER THR ALA ASP VAL PRO SEQRES 3 A 300 PHE SER TRP MSE GLU LYS TYR ASP ILE ASP SER ILE PRO SEQRES 4 A 300 LEU TYR VAL VAL TRP GLU ASP GLY ARG SER GLU PRO ASP SEQRES 5 A 300 GLU ARG GLU PRO GLU GLU ILE MSE ASN PHE TYR LYS ARG SEQRES 6 A 300 ILE ARG GLU ALA GLY SER VAL PRO LYS THR SER GLN PRO SEQRES 7 A 300 SER VAL GLU ASP PHE LYS LYS ARG TYR LEU LYS TYR LYS SEQRES 8 A 300 GLU GLU ASP TYR ASP VAL VAL LEU VAL LEU THR LEU SER SEQRES 9 A 300 SER LYS LEU SER GLY THR TYR ASN SER ALA VAL LEU ALA SEQRES 10 A 300 SER LYS GLU VAL ASP ILE PRO VAL TYR VAL VAL ASP THR SEQRES 11 A 300 LEU LEU ALA SER GLY ALA ILE PRO LEU PRO ALA ARG VAL SEQRES 12 A 300 ALA ARG GLU MSE LEU GLU ASN GLY ALA THR ILE GLU GLU SEQRES 13 A 300 VAL LEU LYS LYS LEU ASP GLU ARG MSE LYS ASN LYS ASP SEQRES 14 A 300 PHE LYS ALA ILE PHE TYR VAL SER ASN PHE ASP TYR LEU SEQRES 15 A 300 VAL LYS GLY GLY ARG VAL SER LYS PHE GLN GLY PHE VAL SEQRES 16 A 300 GLY ASN LEU LEU LYS ILE ARG VAL CYS LEU HIS ILE GLU SEQRES 17 A 300 ASN GLY GLU LEU ILE PRO TYR ARG LYS VAL ARG GLY ASP SEQRES 18 A 300 LYS LYS ALA ILE GLU ALA LEU ILE GLU LYS LEU ARG GLU SEQRES 19 A 300 ASP THR PRO GLU GLY SER LYS LEU ARG VAL ILE GLY VAL SEQRES 20 A 300 HIS ALA ASP ASN GLU ALA GLY VAL VAL GLU LEU LEU ASN SEQRES 21 A 300 THR LEU ARG LYS SER TYR GLU VAL VAL ASP GLU ILE ILE SEQRES 22 A 300 SER PRO MSE GLY LYS VAL ILE THR THR HIS VAL GLY PRO SEQRES 23 A 300 GLY THR VAL GLY PHE GLY ILE GLU VAL LEU GLU ARG LYS SEQRES 24 A 300 ARG SEQRES 1 B 300 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 300 LYS VAL LYS ILE LEU VAL ASP SER THR ALA ASP VAL PRO SEQRES 3 B 300 PHE SER TRP MSE GLU LYS TYR ASP ILE ASP SER ILE PRO SEQRES 4 B 300 LEU TYR VAL VAL TRP GLU ASP GLY ARG SER GLU PRO ASP SEQRES 5 B 300 GLU ARG GLU PRO GLU GLU ILE MSE ASN PHE TYR LYS ARG SEQRES 6 B 300 ILE ARG GLU ALA GLY SER VAL PRO LYS THR SER GLN PRO SEQRES 7 B 300 SER VAL GLU ASP PHE LYS LYS ARG TYR LEU LYS TYR LYS SEQRES 8 B 300 GLU GLU ASP TYR ASP VAL VAL LEU VAL LEU THR LEU SER SEQRES 9 B 300 SER LYS LEU SER GLY THR TYR ASN SER ALA VAL LEU ALA SEQRES 10 B 300 SER LYS GLU VAL ASP ILE PRO VAL TYR VAL VAL ASP THR SEQRES 11 B 300 LEU LEU ALA SER GLY ALA ILE PRO LEU PRO ALA ARG VAL SEQRES 12 B 300 ALA ARG GLU MSE LEU GLU ASN GLY ALA THR ILE GLU GLU SEQRES 13 B 300 VAL LEU LYS LYS LEU ASP GLU ARG MSE LYS ASN LYS ASP SEQRES 14 B 300 PHE LYS ALA ILE PHE TYR VAL SER ASN PHE ASP TYR LEU SEQRES 15 B 300 VAL LYS GLY GLY ARG VAL SER LYS PHE GLN GLY PHE VAL SEQRES 16 B 300 GLY ASN LEU LEU LYS ILE ARG VAL CYS LEU HIS ILE GLU SEQRES 17 B 300 ASN GLY GLU LEU ILE PRO TYR ARG LYS VAL ARG GLY ASP SEQRES 18 B 300 LYS LYS ALA ILE GLU ALA LEU ILE GLU LYS LEU ARG GLU SEQRES 19 B 300 ASP THR PRO GLU GLY SER LYS LEU ARG VAL ILE GLY VAL SEQRES 20 B 300 HIS ALA ASP ASN GLU ALA GLY VAL VAL GLU LEU LEU ASN SEQRES 21 B 300 THR LEU ARG LYS SER TYR GLU VAL VAL ASP GLU ILE ILE SEQRES 22 B 300 SER PRO MSE GLY LYS VAL ILE THR THR HIS VAL GLY PRO SEQRES 23 B 300 GLY THR VAL GLY PHE GLY ILE GLU VAL LEU GLU ARG LYS SEQRES 24 B 300 ARG MODRES 1VPV MSE A 1 MET SELENOMETHIONINE MODRES 1VPV MSE A 18 MET SELENOMETHIONINE MODRES 1VPV MSE A 48 MET SELENOMETHIONINE MODRES 1VPV MSE A 135 MET SELENOMETHIONINE MODRES 1VPV MSE A 153 MET SELENOMETHIONINE MODRES 1VPV MSE A 264 MET SELENOMETHIONINE MODRES 1VPV MSE B 1 MET SELENOMETHIONINE MODRES 1VPV MSE B 18 MET SELENOMETHIONINE MODRES 1VPV MSE B 48 MET SELENOMETHIONINE MODRES 1VPV MSE B 135 MET SELENOMETHIONINE MODRES 1VPV MSE B 153 MET SELENOMETHIONINE MODRES 1VPV MSE B 264 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 18 8 HET MSE A 48 8 HET MSE A 135 8 HET MSE A 153 8 HET MSE A 264 8 HET MSE B 1 8 HET MSE B 18 8 HET MSE B 48 8 HET MSE B 135 8 HET MSE B 153 8 HET MSE B 264 8 HET PO4 B 289 5 HET PO4 A 289 5 HET PLM A 501 18 HET PLM B 501 18 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM PLM PALMITIC ACID FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 PLM 2(C16 H32 O2) FORMUL 7 HOH *107(H2 O) HELIX 1 1 THR A 10 ASP A 12 5 3 HELIX 2 2 SER A 16 TYR A 21 1 6 HELIX 3 3 GLU A 43 ALA A 57 1 15 HELIX 4 4 SER A 67 GLU A 81 1 15 HELIX 5 5 GLY A 97 LYS A 107 1 11 HELIX 6 6 ALA A 121 ALA A 124 5 4 HELIX 7 7 ILE A 125 ASN A 138 1 14 HELIX 8 8 THR A 141 ASN A 155 1 15 HELIX 9 9 PHE A 167 GLY A 174 1 8 HELIX 10 10 GLY A 208 ARG A 221 1 14 HELIX 11 11 ASN A 239 LYS A 252 1 14 HELIX 12 12 GLY A 265 GLY A 273 1 9 HELIX 13 13 THR B 10 ASP B 12 5 3 HELIX 14 14 SER B 16 TYR B 21 1 6 HELIX 15 15 GLU B 43 ALA B 57 1 15 HELIX 16 16 SER B 67 GLU B 81 1 15 HELIX 17 17 GLY B 97 GLU B 108 1 12 HELIX 18 18 ALA B 121 ALA B 124 5 4 HELIX 19 19 ILE B 125 ASN B 138 1 14 HELIX 20 20 THR B 141 ASN B 155 1 15 HELIX 21 21 PHE B 167 GLY B 174 1 8 HELIX 22 22 GLY B 208 GLU B 222 1 15 HELIX 23 23 ASN B 239 ARG B 251 1 13 HELIX 24 24 GLY B 265 GLY B 273 1 9 SHEET 1 A 4 ILE A 23 ILE A 26 0 SHEET 2 A 4 VAL A 3 ASP A 8 1 N VAL A 7 O ASP A 24 SHEET 3 A 4 VAL A 85 THR A 90 1 O LEU A 87 N LYS A 4 SHEET 4 A 4 VAL A 113 ASP A 117 1 O VAL A 116 N VAL A 88 SHEET 1 B 3 SER A 37 PRO A 39 0 SHEET 2 B 3 TYR A 29 VAL A 31 -1 N VAL A 30 O GLU A 38 SHEET 3 B 3 LYS A 62 SER A 64 -1 O LYS A 62 N VAL A 31 SHEET 1 C 6 GLU A 199 ARG A 207 0 SHEET 2 C 6 ILE A 189 GLU A 196 -1 N CYS A 192 O ARG A 204 SHEET 3 C 6 PHE A 158 VAL A 164 -1 N PHE A 162 O LEU A 193 SHEET 4 C 6 VAL A 277 GLU A 285 -1 O PHE A 279 N ILE A 161 SHEET 5 C 6 LYS A 229 HIS A 236 -1 N ARG A 231 O GLU A 282 SHEET 6 C 6 GLU A 255 PRO A 263 1 O SER A 262 N GLY A 234 SHEET 1 D 4 ILE B 23 ILE B 26 0 SHEET 2 D 4 VAL B 3 ASP B 8 1 N ILE B 5 O ASP B 24 SHEET 3 D 4 VAL B 85 THR B 90 1 O LEU B 87 N LYS B 4 SHEET 4 D 4 VAL B 113 ASP B 117 1 O TYR B 114 N VAL B 88 SHEET 1 E 3 SER B 37 PRO B 39 0 SHEET 2 E 3 TYR B 29 VAL B 31 -1 N VAL B 30 O GLU B 38 SHEET 3 E 3 LYS B 62 SER B 64 -1 O SER B 64 N TYR B 29 SHEET 1 F 6 GLU B 199 ARG B 207 0 SHEET 2 F 6 ILE B 189 GLU B 196 -1 N HIS B 194 O ILE B 201 SHEET 3 F 6 PHE B 158 VAL B 164 -1 N PHE B 162 O LEU B 193 SHEET 4 F 6 VAL B 277 GLU B 285 -1 O ILE B 281 N LYS B 159 SHEET 5 F 6 LYS B 229 HIS B 236 -1 N VAL B 235 O GLY B 278 SHEET 6 F 6 GLU B 255 PRO B 263 1 O SER B 262 N GLY B 234 LINK C MSE A 1 N LYS A 2 1555 1555 1.32 LINK C TRP A 17 N MSE A 18 1555 1555 1.32 LINK C MSE A 18 N GLU A 19 1555 1555 1.33 LINK C ILE A 47 N MSE A 48 1555 1555 1.32 LINK C MSE A 48 N ASN A 49 1555 1555 1.33 LINK C GLU A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N LEU A 136 1555 1555 1.33 LINK C ARG A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N LYS A 154 1555 1555 1.33 LINK C PRO A 263 N MSE A 264 1555 1555 1.32 LINK C MSE A 264 N GLY A 265 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C TRP B 17 N MSE B 18 1555 1555 1.32 LINK C MSE B 18 N GLU B 19 1555 1555 1.33 LINK C ILE B 47 N MSE B 48 1555 1555 1.33 LINK C MSE B 48 N ASN B 49 1555 1555 1.33 LINK C GLU B 134 N MSE B 135 1555 1555 1.32 LINK C MSE B 135 N LEU B 136 1555 1555 1.34 LINK C ARG B 152 N MSE B 153 1555 1555 1.33 LINK C MSE B 153 N LYS B 154 1555 1555 1.33 LINK C PRO B 263 N MSE B 264 1555 1555 1.32 LINK C MSE B 264 N GLY B 265 1555 1555 1.32 SITE 1 AC1 5 ARG A 55 TYR A 169 LYS B 188 ARG B 190 SITE 2 AC1 5 HOH B 524 SITE 1 AC2 6 LYS A 188 ARG A 190 HOH A 506 HOH A 531 SITE 2 AC2 6 ARG B 55 TYR B 169 SITE 1 AC3 15 LEU A 28 THR A 63 SER A 64 GLN A 65 SITE 2 AC3 15 SER A 96 SER A 122 GLY A 123 ALA A 124 SITE 3 AC3 15 PHE A 162 ARG A 175 MSE A 264 HIS A 271 SITE 4 AC3 15 PHE A 279 GLY A 280 HOH A 525 SITE 1 AC4 14 LEU B 28 THR B 63 SER B 64 SER B 96 SITE 2 AC4 14 SER B 122 GLY B 123 PHE B 162 ARG B 175 SITE 3 AC4 14 VAL B 235 HIS B 271 VAL B 272 PHE B 279 SITE 4 AC4 14 GLY B 280 HOH B 554 CRYST1 103.256 103.256 115.863 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009685 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008631 0.00000 MASTER 435 0 16 24 26 0 12 6 0 0 0 48 END