HEADER HYDROLASE 06-OCT-04 1VP2 TITLE CRYSTAL STRUCTURE OF A PUTATIVE XANTHOSINE TRIPHOSPHATE TITLE 2 PYROPHOSPHATASE/HAM1 PROTEIN HOMOLOG (TM0159) FROM THERMOTOGA TITLE 3 MARITIMA AT 1.78 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE XANTHOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 COMPND 3 PROTEIN HOMOLOG; COMPND 4 CHAIN: A, B; COMPND 5 EC: 3.6.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0159; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PUTATIVE XANTHOSINE TRIPHOSPHATE PYROPHOSPHATASE, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 13-JUL-11 1VP2 1 VERSN REVDAT 5 28-JUL-10 1VP2 1 HEADER TITLE KEYWDS REVDAT 4 24-FEB-09 1VP2 1 VERSN REVDAT 3 18-JAN-05 1VP2 1 REMARK REVDAT 2 23-NOV-04 1VP2 1 REMARK REVDAT 1 26-OCT-04 1VP2 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE XANTHOSINE TRIPHOSPHATE JRNL TITL 2 PYROPHOSPHATASE1/HAM1 PROTEIN HOMOLOG (TM0159) FROM JRNL TITL 3 THERMOTOGA MARITIMA AT 1.78 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 3 NUMBER OF REFLECTIONS : 35706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1280 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.286 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3055 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2823 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4123 ; 1.592 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6575 ; 0.889 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 5.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;35.957 ;23.548 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;14.410 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.980 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3316 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 618 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 558 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2717 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1743 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 64 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2060 ; 2.485 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 768 ; 0.644 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3049 ; 3.090 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1297 ; 5.264 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1074 ; 7.232 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 191 REMARK 3 ORIGIN FOR THE GROUP (A): 54.0477 31.9733 7.0013 REMARK 3 T TENSOR REMARK 3 T11: -0.0758 T22: 0.0011 REMARK 3 T33: -0.0837 T12: -0.0351 REMARK 3 T13: -0.0115 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.3687 L22: 1.9763 REMARK 3 L33: 0.7128 L12: -0.9743 REMARK 3 L13: -0.1611 L23: -0.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: -0.1895 S13: 0.0605 REMARK 3 S21: 0.2085 S22: -0.0366 S23: -0.1283 REMARK 3 S31: -0.0738 S32: -0.0103 S33: 0.0271 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 191 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9127 10.1906 -7.4960 REMARK 3 T TENSOR REMARK 3 T11: -0.0236 T22: -0.0828 REMARK 3 T33: -0.0733 T12: 0.0245 REMARK 3 T13: -0.0233 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 2.1940 L22: 1.4645 REMARK 3 L33: 1.0496 L12: -0.8755 REMARK 3 L13: 0.2718 L23: -0.3171 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: 0.2323 S13: -0.1860 REMARK 3 S21: -0.1634 S22: -0.0478 S23: 0.0810 REMARK 3 S31: -0.0145 S32: -0.0785 S33: -0.0362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-04. REMARK 100 THE RCSB ID CODE IS RCSB002027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 34.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 42.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50200 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1V7R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M (NH4)2SO4, 0.1M NACL, 0.1M HEPES REMARK 280 PH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.54100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 71.42550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 71.42550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.27050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 71.42550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 71.42550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.81150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 71.42550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.42550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 11.27050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 71.42550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.42550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.81150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 22.54100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY DATA SUPPORT THE ASSIGNMENT REMARK 300 OF THE TETRAMER AS THE BIOLOGICALLY SIGNIFICANT STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 192 REMARK 465 SER A 193 REMARK 465 GLU A 194 REMARK 465 ASN A 195 REMARK 465 ARG A 196 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 192 REMARK 465 SER B 193 REMARK 465 GLU B 194 REMARK 465 ASN B 195 REMARK 465 ARG B 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 GLU A 34 CB CG CD OE1 OE2 REMARK 470 LYS A 35 CB CG CD CE NZ REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 ARG A 86 CD NE CZ NH1 NH2 REMARK 470 LYS A 94 CD CE NZ REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 ARG B 86 CD NE CZ NH1 NH2 REMARK 470 LYS B 94 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 33 N - CD - CG ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP B 68 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 133 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG B 133 NE - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 52.81 -99.35 REMARK 500 ASN B 12 109.79 -56.35 REMARK 500 MET B 88 49.44 36.84 REMARK 500 ILE B 166 57.95 -119.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 198 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282039 RELATED DB: TARGETDB DBREF 1VP2 A 1 196 UNP Q9WY06 HAM1_THEMA 1 196 DBREF 1VP2 B 1 196 UNP Q9WY06 HAM1_THEMA 1 196 SEQADV 1VP2 MET A -11 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 GLY A -10 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 SER A -9 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 ASP A -8 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 LYS A -7 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 ILE A -6 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS A -5 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS A -4 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS A -3 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS A -2 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS A -1 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS A 0 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 MET B -11 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 GLY B -10 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 SER B -9 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 ASP B -8 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 LYS B -7 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 ILE B -6 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS B -5 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS B -4 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS B -3 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS B -2 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS B -1 UNP Q9WY06 LEADER SEQUENCE SEQADV 1VP2 HIS B 0 UNP Q9WY06 LEADER SEQUENCE SEQRES 1 A 208 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 208 LYS LYS LEU THR VAL TYR LEU ALA THR THR ASN PRO HIS SEQRES 3 A 208 LYS VAL GLU GLU ILE LYS MET ILE ALA PRO GLU TRP MET SEQRES 4 A 208 GLU ILE LEU PRO SER PRO GLU LYS ILE GLU VAL VAL GLU SEQRES 5 A 208 ASP GLY GLU THR PHE LEU GLU ASN SER VAL LYS LYS ALA SEQRES 6 A 208 VAL VAL TYR GLY LYS LYS LEU LYS HIS PRO VAL MET ALA SEQRES 7 A 208 ASP ASP SER GLY LEU VAL ILE TYR SER LEU GLY GLY PHE SEQRES 8 A 208 PRO GLY VAL MET SER ALA ARG PHE MET GLU GLU HIS SER SEQRES 9 A 208 TYR LYS GLU LYS MET ARG THR ILE LEU LYS MET LEU GLU SEQRES 10 A 208 GLY LYS ASP ARG ARG ALA ALA PHE VAL CYS SER ALA THR SEQRES 11 A 208 PHE PHE ASP PRO VAL GLU ASN THR LEU ILE SER VAL GLU SEQRES 12 A 208 ASP ARG VAL GLU GLY ARG ILE ALA ASN GLU ILE ARG GLY SEQRES 13 A 208 THR GLY GLY PHE GLY TYR ASP PRO PHE PHE ILE PRO ASP SEQRES 14 A 208 GLY TYR ASP LYS THR PHE GLY GLU ILE PRO HIS LEU LYS SEQRES 15 A 208 GLU LYS ILE SER HIS ARG SER LYS ALA PHE ARG LYS LEU SEQRES 16 A 208 PHE SER VAL LEU GLU LYS ILE LEU GLU SER GLU ASN ARG SEQRES 1 B 208 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 208 LYS LYS LEU THR VAL TYR LEU ALA THR THR ASN PRO HIS SEQRES 3 B 208 LYS VAL GLU GLU ILE LYS MET ILE ALA PRO GLU TRP MET SEQRES 4 B 208 GLU ILE LEU PRO SER PRO GLU LYS ILE GLU VAL VAL GLU SEQRES 5 B 208 ASP GLY GLU THR PHE LEU GLU ASN SER VAL LYS LYS ALA SEQRES 6 B 208 VAL VAL TYR GLY LYS LYS LEU LYS HIS PRO VAL MET ALA SEQRES 7 B 208 ASP ASP SER GLY LEU VAL ILE TYR SER LEU GLY GLY PHE SEQRES 8 B 208 PRO GLY VAL MET SER ALA ARG PHE MET GLU GLU HIS SER SEQRES 9 B 208 TYR LYS GLU LYS MET ARG THR ILE LEU LYS MET LEU GLU SEQRES 10 B 208 GLY LYS ASP ARG ARG ALA ALA PHE VAL CYS SER ALA THR SEQRES 11 B 208 PHE PHE ASP PRO VAL GLU ASN THR LEU ILE SER VAL GLU SEQRES 12 B 208 ASP ARG VAL GLU GLY ARG ILE ALA ASN GLU ILE ARG GLY SEQRES 13 B 208 THR GLY GLY PHE GLY TYR ASP PRO PHE PHE ILE PRO ASP SEQRES 14 B 208 GLY TYR ASP LYS THR PHE GLY GLU ILE PRO HIS LEU LYS SEQRES 15 B 208 GLU LYS ILE SER HIS ARG SER LYS ALA PHE ARG LYS LEU SEQRES 16 B 208 PHE SER VAL LEU GLU LYS ILE LEU GLU SER GLU ASN ARG HET SO4 A 197 5 HET SO4 B 197 5 HET SO4 A 198 5 HET SO4 B 198 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *256(H2 O) HELIX 1 1 ASN A 12 MET A 21 1 10 HELIX 2 2 THR A 44 LYS A 61 1 18 HELIX 3 3 SER A 75 GLY A 77 5 3 HELIX 4 4 PRO A 80 SER A 84 5 5 HELIX 5 5 SER A 92 LEU A 104 1 13 HELIX 6 6 TYR A 150 PRO A 152 5 3 HELIX 7 7 ILE A 166 HIS A 168 5 3 HELIX 8 8 LEU A 169 SER A 174 1 6 HELIX 9 9 SER A 174 LEU A 191 1 18 HELIX 10 10 ASN B 12 MET B 21 1 10 HELIX 11 11 THR B 44 LYS B 61 1 18 HELIX 12 12 SER B 75 GLY B 77 5 3 HELIX 13 13 PRO B 80 SER B 84 5 5 HELIX 14 14 SER B 92 LEU B 104 1 13 HELIX 15 15 TYR B 150 PRO B 152 5 3 HELIX 16 16 ILE B 166 HIS B 168 5 3 HELIX 17 17 LEU B 169 SER B 174 1 6 HELIX 18 18 SER B 174 LEU B 191 1 18 SHEET 1 A 6 MET A 27 PRO A 31 0 SHEET 2 A 6 LEU A 4 LEU A 8 1 N LEU A 4 O GLU A 28 SHEET 3 A 6 VAL A 64 ILE A 73 1 O MET A 65 N TYR A 7 SHEET 4 A 6 ARG A 110 ASP A 121 -1 O ALA A 112 N VAL A 72 SHEET 5 A 6 THR A 126 ILE A 138 -1 O ILE A 128 N PHE A 119 SHEET 6 A 6 PHE A 154 PRO A 156 -1 O ILE A 155 N ARG A 137 SHEET 1 B 6 MET B 27 PRO B 31 0 SHEET 2 B 6 LEU B 4 LEU B 8 1 N VAL B 6 O GLU B 28 SHEET 3 B 6 VAL B 64 ILE B 73 1 O MET B 65 N TYR B 7 SHEET 4 B 6 ARG B 110 ASP B 121 -1 O ALA B 112 N VAL B 72 SHEET 5 B 6 THR B 126 ILE B 138 -1 O ILE B 128 N PHE B 119 SHEET 6 B 6 PHE B 154 PRO B 156 -1 O ILE B 155 N ARG B 137 CISPEP 1 PHE A 79 PRO A 80 0 -4.32 CISPEP 2 PHE B 79 PRO B 80 0 -5.89 SITE 1 AC1 7 THR A 10 ASN A 12 LYS A 15 LYS A 52 SITE 2 AC1 7 ASP A 67 HOH A 214 HOH A 264 SITE 1 AC2 7 THR B 10 LYS B 15 LYS B 52 ASP B 67 SITE 2 AC2 7 HOH B 203 HOH B 237 HOH B 257 SITE 1 AC3 9 ALA A 139 ASN A 140 ARG A 143 ILE A 155 SITE 2 AC3 9 HOH A 218 HOH A 268 HOH A 289 HOH A 314 SITE 3 AC3 9 HOH B 311 SITE 1 AC4 8 HOH A 241 ARG B 137 ASN B 140 ARG B 143 SITE 2 AC4 8 ILE B 155 HOH B 239 HOH B 264 HOH B 310 CRYST1 142.851 142.851 45.082 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022182 0.00000 MASTER 419 0 4 18 12 0 9 6 0 0 0 32 END