HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-AUG-04 1VM0 TITLE X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G34160 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNKNOWN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT2G34160; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: B834-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP13-GW KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, CESG, AT2G34160, KEYWDS 2 UNKNOWN FUNCTION, NITRATE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 3 GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,D.W.SMITH,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN, AUTHOR 2 S.T.M.ALLARD,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 7 20-OCT-21 1VM0 1 REMARK SEQADV LINK REVDAT 6 04-OCT-17 1VM0 1 REMARK REVDAT 5 13-JUL-11 1VM0 1 VERSN REVDAT 4 24-FEB-09 1VM0 1 VERSN REVDAT 3 12-FEB-08 1VM0 1 REMARK REVDAT 2 01-FEB-05 1VM0 1 AUTHOR KEYWDS REMARK REVDAT 1 31-AUG-04 1VM0 0 JRNL AUTH CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS JRNL TITL X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA JRNL TITL 2 AT2G34160 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.198 REMARK 3 FREE R VALUE TEST SET COUNT : 1030 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1342 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1554 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.15800 REMARK 3 B22 (A**2) : -0.16500 REMARK 3 B33 (A**2) : -0.99300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1581 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1502 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2115 ; 2.001 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3519 ; 1.019 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 193 ; 5.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1680 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 278 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 285 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1718 ; 0.247 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 761 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1008 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.345 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 100 ; 0.304 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.291 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 988 ; 1.590 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 391 ; 0.347 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1584 ; 3.013 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1334 ; 1.349 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 593 ; 5.327 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1111 ; 1.287 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 531 ; 8.468 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2185 ; 3.776 ; 8.000 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000001996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97908,0.97931,0.97623 REMARK 200 MONOCHROMATOR : DIAMOND 111 MIRROR REMARK 200 OPTICS : RH MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37012 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE 2.06, RESOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN 10 MG/ML, 18% PEG2K, POTASSIUM REMARK 280 NITRATE 0.200 M, MOPS 0.100 M, PH 7.0, BATCH, TEMPERATURE 293 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.89250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.53950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.89250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.53950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE PROBABLE BIOLOGICAL UNIT REMARK 300 IS A TETRAMER. SEE REMARK 350 FOR INFORMATION ON REMARK 300 GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 59.78500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 79.07900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 GLY A 7 REMARK 465 VAL A 8 REMARK 465 ASN A 9 REMARK 465 ASN A 10 REMARK 465 MSE A 11 REMARK 465 ASN A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 THR A 15 REMARK 465 ASP A 16 REMARK 465 SER A 17 REMARK 465 GLN A 18 REMARK 465 ASP A 88 REMARK 465 ASP A 89 REMARK 465 ALA A 90 REMARK 465 ARG A 91 REMARK 465 GLY A 92 REMARK 465 ARG A 93 REMARK 465 ASN A 118 REMARK 465 GLU A 119 REMARK 465 GLU A 120 REMARK 465 LYS A 121 REMARK 465 GLU A 122 REMARK 465 ASP A 123 REMARK 465 ALA A 124 REMARK 465 GLU A 125 REMARK 465 THR A 126 REMARK 465 GLN A 127 REMARK 465 VAL A 128 REMARK 465 GLN A 129 REMARK 465 ASN A 130 REMARK 465 SER B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 ILE B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 GLY B 7 REMARK 465 VAL B 8 REMARK 465 ASN B 9 REMARK 465 ASN B 10 REMARK 465 MSE B 11 REMARK 465 ASN B 12 REMARK 465 LEU B 13 REMARK 465 ALA B 14 REMARK 465 THR B 15 REMARK 465 ASP B 16 REMARK 465 SER B 17 REMARK 465 GLN B 18 REMARK 465 LYS B 19 REMARK 465 ASP B 123 REMARK 465 ALA B 124 REMARK 465 GLU B 125 REMARK 465 THR B 126 REMARK 465 GLN B 127 REMARK 465 VAL B 128 REMARK 465 GLN B 129 REMARK 465 ASN B 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 37 O HOH A 468 2.08 REMARK 500 O HOH B 459 O HOH B 472 2.11 REMARK 500 OE2 GLU B 50 O HOH B 494 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 434 O HOH B 434 2665 2.01 REMARK 500 O HOH A 418 O HOH A 418 2665 2.04 REMARK 500 O HOH A 420 O HOH B 422 2664 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE B 43 SE MSE B 43 CE -0.831 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 89 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 -41.52 86.52 REMARK 500 SER B 26 -10.42 -150.02 REMARK 500 ASN B 47 -31.86 80.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 19 O REMARK 620 2 LYS A 20 O 67.6 REMARK 620 3 ARG A 22 O 86.5 101.2 REMARK 620 4 TYR A 42 OH 132.1 66.8 88.4 REMARK 620 5 HOH A 422 O 75.8 139.4 93.3 152.1 REMARK 620 6 HOH B 423 O 151.0 140.8 91.0 76.6 75.5 REMARK 620 7 HOH B 432 O 92.6 73.1 174.1 87.9 92.0 92.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 300 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 26 O REMARK 620 2 SER B 26 O 107.7 REMARK 620 3 GLU B 120 O 101.4 150.8 REMARK 620 4 GLU B 120 OE1 84.7 90.8 90.3 REMARK 620 5 GLU B 122 OE2 81.9 81.9 104.1 162.0 REMARK 620 6 HOH B 437 O 175.4 76.4 74.6 97.3 96.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.8793 RELATED DB: TARGETDB DBREF 1VM0 A 2 130 UNP O22969 Y2416_ARATH 2 130 DBREF 1VM0 B 2 130 UNP O22969 Y2416_ARATH 2 130 SEQADV 1VM0 SER A 1 UNP O22969 CLONING ARTIFACT SEQADV 1VM0 MSE A 11 UNP O22969 MET 11 MODIFIED RESIDUE SEQADV 1VM0 MSE A 43 UNP O22969 MET 43 MODIFIED RESIDUE SEQADV 1VM0 MSE A 56 UNP O22969 MET 56 MODIFIED RESIDUE SEQADV 1VM0 MSE A 80 UNP O22969 MET 80 MODIFIED RESIDUE SEQADV 1VM0 ILE A 83 UNP O22969 THR 83 ENGINEERED MUTATION SEQADV 1VM0 MSE A 114 UNP O22969 MET 114 MODIFIED RESIDUE SEQADV 1VM0 THR A 126 UNP O22969 ALA 126 ENGINEERED MUTATION SEQADV 1VM0 SER B 1 UNP O22969 CLONING ARTIFACT SEQADV 1VM0 MSE B 11 UNP O22969 MET 11 MODIFIED RESIDUE SEQADV 1VM0 MSE B 43 UNP O22969 MET 43 MODIFIED RESIDUE SEQADV 1VM0 MSE B 56 UNP O22969 MET 56 MODIFIED RESIDUE SEQADV 1VM0 MSE B 80 UNP O22969 MET 80 MODIFIED RESIDUE SEQADV 1VM0 ILE B 83 UNP O22969 THR 83 ENGINEERED MUTATION SEQADV 1VM0 MSE B 114 UNP O22969 MET 114 MODIFIED RESIDUE SEQADV 1VM0 THR B 126 UNP O22969 ALA 126 ENGINEERED MUTATION SEQRES 1 A 130 SER GLU GLU ILE THR ASP GLY VAL ASN ASN MSE ASN LEU SEQRES 2 A 130 ALA THR ASP SER GLN LYS LYS ASN ARG ILE GLN VAL SER SEQRES 3 A 130 ASN THR LYS LYS PRO LEU PHE PHE TYR VAL ASN LEU ALA SEQRES 4 A 130 LYS ARG TYR MSE GLN GLN TYR ASN ASP VAL GLU LEU SER SEQRES 5 A 130 ALA LEU GLY MSE ALA ILE ALA THR VAL VAL THR VAL THR SEQRES 6 A 130 GLU ILE LEU LYS ASN ASN GLY PHE ALA VAL GLU LYS LYS SEQRES 7 A 130 ILE MSE THR SER ILE VAL ASP ILE LYS ASP ASP ALA ARG SEQRES 8 A 130 GLY ARG PRO VAL GLN LYS ALA LYS ILE GLU ILE THR LEU SEQRES 9 A 130 VAL LYS SER GLU LYS PHE ASP GLU LEU MSE ALA ALA ALA SEQRES 10 A 130 ASN GLU GLU LYS GLU ASP ALA GLU THR GLN VAL GLN ASN SEQRES 1 B 130 SER GLU GLU ILE THR ASP GLY VAL ASN ASN MSE ASN LEU SEQRES 2 B 130 ALA THR ASP SER GLN LYS LYS ASN ARG ILE GLN VAL SER SEQRES 3 B 130 ASN THR LYS LYS PRO LEU PHE PHE TYR VAL ASN LEU ALA SEQRES 4 B 130 LYS ARG TYR MSE GLN GLN TYR ASN ASP VAL GLU LEU SER SEQRES 5 B 130 ALA LEU GLY MSE ALA ILE ALA THR VAL VAL THR VAL THR SEQRES 6 B 130 GLU ILE LEU LYS ASN ASN GLY PHE ALA VAL GLU LYS LYS SEQRES 7 B 130 ILE MSE THR SER ILE VAL ASP ILE LYS ASP ASP ALA ARG SEQRES 8 B 130 GLY ARG PRO VAL GLN LYS ALA LYS ILE GLU ILE THR LEU SEQRES 9 B 130 VAL LYS SER GLU LYS PHE ASP GLU LEU MSE ALA ALA ALA SEQRES 10 B 130 ASN GLU GLU LYS GLU ASP ALA GLU THR GLN VAL GLN ASN MODRES 1VM0 MSE A 43 MET SELENOMETHIONINE MODRES 1VM0 MSE A 56 MET SELENOMETHIONINE MODRES 1VM0 MSE A 80 MET SELENOMETHIONINE MODRES 1VM0 MSE A 114 MET SELENOMETHIONINE MODRES 1VM0 MSE B 43 MET SELENOMETHIONINE MODRES 1VM0 MSE B 56 MET SELENOMETHIONINE MODRES 1VM0 MSE B 80 MET SELENOMETHIONINE MODRES 1VM0 MSE B 114 MET SELENOMETHIONINE HET MSE A 43 8 HET MSE A 56 8 HET MSE A 80 8 HET MSE A 114 8 HET MSE B 43 8 HET MSE B 56 8 HET MSE B 80 8 HET MSE B 114 8 HET K A 301 1 HET NO3 A 402 4 HET K B 300 1 HET NO3 B 400 4 HET NO3 B 401 4 HET NO3 B 403 4 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM NO3 NITRATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 K 2(K 1+) FORMUL 4 NO3 4(N O3 1-) FORMUL 9 HOH *161(H2 O) HELIX 1 1 PRO A 31 ASN A 47 1 17 HELIX 2 2 ALA A 57 ASN A 71 1 15 HELIX 3 3 LYS A 109 ALA A 117 1 9 HELIX 4 4 PRO B 31 ASN B 47 1 17 HELIX 5 5 ALA B 57 ASN B 71 1 15 HELIX 6 6 LYS B 109 ASN B 118 1 10 SHEET 1 A 4 ARG A 22 GLN A 24 0 SHEET 2 A 4 ASP A 48 LEU A 54 1 O GLU A 50 N ILE A 23 SHEET 3 A 4 VAL A 95 LYS A 106 -1 O ILE A 102 N LEU A 51 SHEET 4 A 4 ALA A 74 ILE A 86 -1 N LYS A 78 O THR A 103 SHEET 1 B 4 ARG B 22 VAL B 25 0 SHEET 2 B 4 ASP B 48 LEU B 54 1 O GLU B 50 N ILE B 23 SHEET 3 B 4 VAL B 95 LYS B 106 -1 O ILE B 102 N LEU B 51 SHEET 4 B 4 ALA B 74 ILE B 86 -1 N ILE B 86 O VAL B 95 LINK C TYR A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N GLN A 44 1555 1555 1.32 LINK C GLY A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N ALA A 57 1555 1555 1.34 LINK C ILE A 79 N MSE A 80 1555 1555 1.34 LINK C MSE A 80 N THR A 81 1555 1555 1.33 LINK C LEU A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N ALA A 115 1555 1555 1.33 LINK C TYR B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N GLN B 44 1555 1555 1.33 LINK C GLY B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N ALA B 57 1555 1555 1.33 LINK C ILE B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N THR B 81 1555 1555 1.33 LINK C LEU B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N ALA B 115 1555 1555 1.33 LINK O LYS A 19 K K A 301 1555 1555 2.62 LINK O LYS A 20 K K A 301 1555 1555 3.47 LINK O ARG A 22 K K A 301 1555 1555 2.58 LINK O SER A 26 K K B 300 3557 1555 2.57 LINK OH TYR A 42 K K A 301 1555 1555 2.93 LINK K K A 301 O HOH A 422 1555 1555 2.77 LINK K K A 301 O HOH B 423 1555 3547 2.72 LINK K K A 301 O HOH B 432 1555 3547 2.75 LINK O SER B 26 K K B 300 3557 1555 2.54 LINK O GLU B 120 K K B 300 1555 1555 2.82 LINK OE1 GLU B 120 K K B 300 1555 1555 2.67 LINK OE2 GLU B 122 K K B 300 1555 1555 2.76 LINK K K B 300 O HOH B 437 1555 1555 2.85 SITE 1 AC1 7 LYS A 19 LYS A 20 ARG A 22 TYR A 42 SITE 2 AC1 7 HOH A 422 HOH B 423 HOH B 432 SITE 1 AC2 5 LYS A 40 ILE A 67 ASN A 71 PHE A 73 SITE 2 AC2 5 PHE B 33 SITE 1 AC3 5 SER A 26 SER B 26 GLU B 120 GLU B 122 SITE 2 AC3 5 HOH B 437 SITE 1 AC4 7 GLU A 66 ILE A 67 ASN A 70 ASN A 71 SITE 2 AC4 7 HOH A 406 LEU B 32 PHE B 33 SITE 1 AC5 8 PRO A 31 LEU A 32 PHE A 33 GLU B 66 SITE 2 AC5 8 ILE B 67 ASN B 70 ASN B 71 HOH B 409 SITE 1 AC6 5 PHE A 33 LYS B 40 ILE B 67 ASN B 71 SITE 2 AC6 5 PHE B 73 CRYST1 59.785 79.079 43.730 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016727 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022868 0.00000 MASTER 459 0 14 6 8 0 12 6 0 0 0 20 END