HEADER TRANSLATION 24-MAY-04 1VKI TITLE CRYSTAL STRUCTURE OF A PUTATIVE OLIGO-NUCLEOTIDE BINDING PROTEIN TITLE 2 (ATU3699, AGR_L_2275) FROM AGROBACTERIUM TUMEFACIENS STR. C58 AT 1.60 TITLE 3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN ATU3699; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 GENE: ATU3699; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 13-JUL-11 1VKI 1 VERSN REVDAT 5 23-MAR-11 1VKI 1 HEADER TITLE KEYWDS REVDAT 4 24-FEB-09 1VKI 1 VERSN REVDAT 3 28-MAR-06 1VKI 1 JRNL REVDAT 2 18-JAN-05 1VKI 1 AUTHOR KEYWDS REMARK REVDAT 1 08-JUN-04 1VKI 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (ATU3699) FROM JRNL TITL 2 AGROBACTERIUM TUMEFACIENS AT 1.60 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2191 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2550 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.364 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2652 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2456 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3595 ; 1.497 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5727 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 5.675 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;36.143 ;24.867 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 463 ; 9.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.524 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2881 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 495 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 524 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2609 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1600 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 374 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.108 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.236 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.203 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1749 ; 2.220 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 676 ; 0.581 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2700 ; 2.630 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1049 ; 4.590 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 895 ; 6.451 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 169 4 REMARK 3 1 B 5 B 169 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2410 ; 0.33 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2410 ; 0.72 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. TWO SULFATE IONS COULD BE SOMETHING ELSE REMARK 4 REMARK 4 1VKI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB001952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44165 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 2.560 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 19.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.76 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30300 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1VJF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.025% PEG 8000, 0.08M HEPES, 0.02M REMARK 280 HEPES_NA , VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.42400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 58 CE NZ REMARK 470 GLU A 93 CD OE1 OE2 REMARK 470 LYS A 149 CE NZ REMARK 470 LYS B 79 CE NZ REMARK 470 GLU B 93 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 32 -40.99 -132.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 258 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH A 345 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A 367 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A 379 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A 409 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH B 270 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH B 285 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH B 342 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 384 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH B 398 DISTANCE = 5.12 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 171 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 354222 RELATED DB: TARGETDB DBREF 1VKI A 1 169 UNP Q8U9M7 Q8U9M7_AGRT5 1 169 DBREF 1VKI B 1 169 UNP Q8U9M7 Q8U9M7_AGRT5 1 169 SEQADV 1VKI MET A -11 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI GLY A -10 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI SER A -9 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI ASP A -8 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI LYS A -7 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI ILE A -6 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS A -5 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS A -4 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS A -3 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS A -2 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS A -1 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS A 0 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI MET B -11 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI GLY B -10 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI SER B -9 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI ASP B -8 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI LYS B -7 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI ILE B -6 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS B -5 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS B -4 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS B -3 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS B -2 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS B -1 UNP Q8U9M7 LEADER SEQUENCE SEQADV 1VKI HIS B 0 UNP Q8U9M7 LEADER SEQUENCE SEQRES 1 A 181 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 181 THR GLU ASN SER ARG LYS THR ALA THR GLU LEU PHE GLU SEQRES 3 A 181 PHE LEU ASP GLY LEU GLY ILE SER HIS THR THR LYS GLN SEQRES 4 A 181 HIS GLU PRO VAL PHE THR VAL ALA GLU SER GLN SER LEU SEQRES 5 A 181 ARG ASP LEU ILE PRO GLY GLY HIS THR LYS ASN LEU PHE SEQRES 6 A 181 VAL LYS ASP LYS LYS ASP GLN TYR PHE VAL LEU THR VAL SEQRES 7 A 181 GLU GLU ASN ALA VAL VAL ASP LEU LYS SER VAL HIS LYS SEQRES 8 A 181 THR ILE GLY ALA ALA SER ARG VAL SER PHE GLY ARG PRO SEQRES 9 A 181 GLU LYS MET LEU GLU TYR LEU GLY VAL VAL PRO GLY SER SEQRES 10 A 181 VAL THR VAL PHE GLY ALA ILE ASN ASP THR ALA ARG GLN SEQRES 11 A 181 VAL THR PHE VAL LEU ASP SER ASP LEU LEU GLU ASN GLU SEQRES 12 A 181 LEU VAL ASN GLY HIS PRO LEU SER ASN ASP GLN THR THR SEQRES 13 A 181 THR ILE ALA SER LYS ASP LEU ILE ARG PHE LEU GLU ALA SEQRES 14 A 181 THR GLY HIS ALA PRO LEU VAL LEU LYS VAL SER GLU SEQRES 1 B 181 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 181 THR GLU ASN SER ARG LYS THR ALA THR GLU LEU PHE GLU SEQRES 3 B 181 PHE LEU ASP GLY LEU GLY ILE SER HIS THR THR LYS GLN SEQRES 4 B 181 HIS GLU PRO VAL PHE THR VAL ALA GLU SER GLN SER LEU SEQRES 5 B 181 ARG ASP LEU ILE PRO GLY GLY HIS THR LYS ASN LEU PHE SEQRES 6 B 181 VAL LYS ASP LYS LYS ASP GLN TYR PHE VAL LEU THR VAL SEQRES 7 B 181 GLU GLU ASN ALA VAL VAL ASP LEU LYS SER VAL HIS LYS SEQRES 8 B 181 THR ILE GLY ALA ALA SER ARG VAL SER PHE GLY ARG PRO SEQRES 9 B 181 GLU LYS MET LEU GLU TYR LEU GLY VAL VAL PRO GLY SER SEQRES 10 B 181 VAL THR VAL PHE GLY ALA ILE ASN ASP THR ALA ARG GLN SEQRES 11 B 181 VAL THR PHE VAL LEU ASP SER ASP LEU LEU GLU ASN GLU SEQRES 12 B 181 LEU VAL ASN GLY HIS PRO LEU SER ASN ASP GLN THR THR SEQRES 13 B 181 THR ILE ALA SER LYS ASP LEU ILE ARG PHE LEU GLU ALA SEQRES 14 B 181 THR GLY HIS ALA PRO LEU VAL LEU LYS VAL SER GLU HET SO4 B 170 5 HET SO4 A 170 5 HET GOL B 171 6 HET GOL B 172 6 HET GOL B 173 6 HET GOL A 171 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *510(H2 O) HELIX 1 1 THR A 8 GLY A 20 1 13 HELIX 2 2 THR A 33 ASP A 42 1 10 HELIX 3 3 SER A 76 GLY A 82 1 7 HELIX 4 4 ARG A 91 GLY A 100 1 10 HELIX 5 5 THR A 107 ASP A 114 5 8 HELIX 6 6 ASP A 126 ASN A 130 5 5 HELIX 7 7 SER A 148 THR A 158 1 11 HELIX 8 8 THR B 8 GLY B 20 1 13 HELIX 9 9 THR B 33 LEU B 43 1 11 HELIX 10 10 SER B 76 GLY B 82 1 7 HELIX 11 11 ARG B 91 GLY B 100 1 10 HELIX 12 12 THR B 107 ASP B 114 5 8 HELIX 13 13 ASP B 126 ASN B 130 5 5 HELIX 14 14 SER B 148 THR B 158 1 11 SHEET 1 A 5 THR A 24 GLN A 27 0 SHEET 2 A 5 GLN A 142 ALA A 147 -1 O THR A 145 N THR A 24 SHEET 3 A 5 LEU A 132 GLY A 135 -1 N GLY A 135 O THR A 144 SHEET 4 A 5 GLY A 47 LYS A 55 1 N GLY A 47 O LEU A 132 SHEET 5 A 5 SER A 88 PHE A 89 -1 O SER A 88 N LYS A 55 SHEET 1 B 7 THR A 24 GLN A 27 0 SHEET 2 B 7 GLN A 142 ALA A 147 -1 O THR A 145 N THR A 24 SHEET 3 B 7 LEU A 132 GLY A 135 -1 N GLY A 135 O THR A 144 SHEET 4 B 7 GLY A 47 LYS A 55 1 N GLY A 47 O LEU A 132 SHEET 5 B 7 TYR A 61 GLU A 67 -1 O PHE A 62 N VAL A 54 SHEET 6 B 7 VAL A 119 ASP A 124 1 O VAL A 122 N VAL A 63 SHEET 7 B 7 LEU A 163 LEU A 165 1 O LEU A 163 N LEU A 123 SHEET 1 C 5 THR B 24 GLN B 27 0 SHEET 2 C 5 GLN B 142 ALA B 147 -1 O THR B 145 N THR B 24 SHEET 3 C 5 LEU B 132 GLY B 135 -1 N VAL B 133 O ILE B 146 SHEET 4 C 5 GLY B 47 LYS B 55 1 N GLY B 47 O LEU B 132 SHEET 5 C 5 SER B 88 PHE B 89 -1 O SER B 88 N LYS B 55 SHEET 1 D 7 THR B 24 GLN B 27 0 SHEET 2 D 7 GLN B 142 ALA B 147 -1 O THR B 145 N THR B 24 SHEET 3 D 7 LEU B 132 GLY B 135 -1 N VAL B 133 O ILE B 146 SHEET 4 D 7 GLY B 47 LYS B 55 1 N GLY B 47 O LEU B 132 SHEET 5 D 7 TYR B 61 GLU B 67 -1 O PHE B 62 N VAL B 54 SHEET 6 D 7 VAL B 119 ASP B 124 1 O VAL B 122 N VAL B 63 SHEET 7 D 7 LEU B 163 LEU B 165 1 O LEU B 163 N LEU B 123 SITE 1 AC1 8 THR A 33 VAL A 34 GLY B 104 SER B 105 SITE 2 AC1 8 VAL B 106 HOH B 182 HOH B 186 HOH B 382 SITE 1 AC2 9 GLY A 104 SER A 105 VAL A 106 HOH A 187 SITE 2 AC2 9 HOH A 189 HOH A 322 PHE B 32 THR B 33 SITE 3 AC2 9 VAL B 34 SITE 1 AC3 9 LYS A 50 VAL A 72 VAL B 34 GLN B 38 SITE 2 AC3 9 ARG B 41 ASN B 69 HOH B 224 HOH B 296 SITE 3 AC3 9 HOH B 320 SITE 1 AC4 10 VAL A 34 GLN A 38 HOH A 206 HOH A 253 SITE 2 AC4 10 HOH A 285 LYS B 50 LEU B 52 ALA B 70 SITE 3 AC4 10 VAL B 71 VAL B 72 SITE 1 AC5 7 GLY B 46 HIS B 48 GLU B 67 GLU B 68 SITE 2 AC5 7 ASN B 69 HOH B 356 HOH B 364 SITE 1 AC6 8 THR A 24 THR A 25 LYS A 26 LEU A 43 SITE 2 AC6 8 PRO A 45 HOH A 180 HOH A 181 HOH A 216 CRYST1 35.997 64.848 77.427 90.00 100.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027780 0.000000 0.005360 0.00000 SCALE2 0.000000 0.015421 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013154 0.00000 MASTER 352 0 6 14 24 0 15 6 0 0 0 28 END