HEADER HYDROLASE 06-APR-04 1VEV TITLE CRYSTAL STRUCTURE OF PEPTIDE DEFORMYLASE FROM LEPTOSPIRA TITLE 2 INTERROGANS (LIPDF) AT PH6.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIPDF, PDF, POLYPEPTIDE DEFORMYLASE; COMPND 5 EC: 3.5.1.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA INTERROGANS; SOURCE 3 ORGANISM_TAXID: 173; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CLOSED CONFORMATION, MES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHOU,X.SONG,Y.LI,W.GONG REVDAT 3 24-FEB-09 1VEV 1 VERSN REVDAT 2 23-JAN-07 1VEV 1 JRNL REVDAT 1 23-AUG-05 1VEV 0 JRNL AUTH Z.ZHOU,X.SONG,W.GONG JRNL TITL NOVEL CONFORMATIONAL STATES OF PEPTIDE DEFORMYLASE JRNL TITL 2 FROM PATHOGENIC BACTERIUM LEPTOSPIRA INTERROGANS: JRNL TITL 3 IMPLICATIONS FOR POPULATION SHIFT JRNL REF J.BIOL.CHEM. V. 280 42391 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16239225 JRNL DOI 10.1074/JBC.M506370200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.7 REMARK 3 NUMBER OF REFLECTIONS : 21663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2152 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2688 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.38 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VEV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB006541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.20 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21663 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 43.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ID 1SV2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M FORMATE SODIUM, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.52000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.09600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.09600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.26000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.09600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.09600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 150.78000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.09600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.09600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.26000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.09600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.09600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 150.78000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 100.52000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT 1 IS GENERATED BY CHAIN A (X,Y,Z (1_ REMARK 300 555),1-Y,1-X,1/2-Z(8_665)). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 82.19200 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 82.19200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 100.52000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 172 REMARK 465 HIS A 173 REMARK 465 ASN A 174 REMARK 465 VAL A 175 REMARK 465 LEU A 176 REMARK 465 ASP A 177 REMARK 465 SER B 172 REMARK 465 HIS B 173 REMARK 465 ASN B 174 REMARK 465 VAL B 175 REMARK 465 LEU B 176 REMARK 465 ASP B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 THR A 27 OG1 CG2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 39 OD1 OD2 REMARK 470 SER A 65 OG REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 ASP A 170 CG OD1 OD2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 THR B 27 OG1 CG2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 39 OD1 OD2 REMARK 470 SER B 65 OG REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 ASP B 170 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 -9.12 -59.06 REMARK 500 ILE A 25 1.30 -66.94 REMARK 500 SER A 65 -58.24 -140.77 REMARK 500 GLU A 66 117.77 57.64 REMARK 500 THR A 74 140.22 -27.40 REMARK 500 ASP A 130 85.73 -158.48 REMARK 500 LEU A 162 69.90 -106.88 REMARK 500 ASP A 170 0.53 -67.92 REMARK 500 SER B 65 -67.71 -121.89 REMARK 500 GLU B 66 97.75 71.92 REMARK 500 ASP B 130 76.34 -158.14 REMARK 500 ASP B 170 -13.62 -46.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1513 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 101 SG REMARK 620 2 HIS A 143 NE2 111.0 REMARK 620 3 HIS A 147 NE2 97.9 107.0 REMARK 620 4 FMT A1800 O1 93.6 108.2 135.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2513 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 101 SG REMARK 620 2 HIS B 143 NE2 119.3 REMARK 620 3 HIS B 147 NE2 97.7 111.8 REMARK 620 4 FMT B2800 O2 96.8 119.7 108.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1513 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2513 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 1716 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 2716 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 3716 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 2800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SV2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LIPDF AT PH7.5 REMARK 900 RELATED ID: 1RN5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LIPDF AT PH3.0 REMARK 900 RELATED ID: 1VEY RELATED DB: PDB REMARK 900 LIPDF AT PH7.0 REMARK 900 RELATED ID: 1VEZ RELATED DB: PDB REMARK 900 LIPDF AT PH8.0 DBREF 1VEV A 1 177 UNP Q93LE9 DEF_LEPIN 2 178 DBREF 1VEV B 1 177 UNP Q93LE9 DEF_LEPIN 2 178 SEQRES 1 A 177 SER VAL ARG LYS ILE LEU ARG MET GLY ASP PRO ILE LEU SEQRES 2 A 177 ARG LYS ILE SER GLU PRO VAL THR GLU ASP GLU ILE GLN SEQRES 3 A 177 THR LYS GLU PHE LYS LYS LEU ILE ARG ASP MET PHE ASP SEQRES 4 A 177 THR MET ARG HIS ALA GLU GLY VAL GLY LEU ALA ALA PRO SEQRES 5 A 177 GLN ILE GLY ILE LEU LYS GLN ILE VAL VAL VAL GLY SER SEQRES 6 A 177 GLU ASP ASN GLU ARG TYR PRO GLY THR PRO ASP VAL PRO SEQRES 7 A 177 GLU ARG ILE ILE LEU ASN PRO VAL ILE THR PRO LEU THR SEQRES 8 A 177 LYS ASP THR SER GLY PHE TRP GLU GLY CYS LEU SER VAL SEQRES 9 A 177 PRO GLY MET ARG GLY TYR VAL GLU ARG PRO ASN GLN ILE SEQRES 10 A 177 ARG MET GLN TRP MET ASP GLU LYS GLY ASN GLN PHE ASP SEQRES 11 A 177 GLU THR ILE ASP GLY TYR LYS ALA ILE VAL TYR GLN HIS SEQRES 12 A 177 GLU CYS ASP HIS LEU GLN GLY ILE LEU TYR VAL ASP ARG SEQRES 13 A 177 LEU LYS ASP THR LYS LEU PHE GLY PHE ASN GLU THR LEU SEQRES 14 A 177 ASP SER SER HIS ASN VAL LEU ASP SEQRES 1 B 177 SER VAL ARG LYS ILE LEU ARG MET GLY ASP PRO ILE LEU SEQRES 2 B 177 ARG LYS ILE SER GLU PRO VAL THR GLU ASP GLU ILE GLN SEQRES 3 B 177 THR LYS GLU PHE LYS LYS LEU ILE ARG ASP MET PHE ASP SEQRES 4 B 177 THR MET ARG HIS ALA GLU GLY VAL GLY LEU ALA ALA PRO SEQRES 5 B 177 GLN ILE GLY ILE LEU LYS GLN ILE VAL VAL VAL GLY SER SEQRES 6 B 177 GLU ASP ASN GLU ARG TYR PRO GLY THR PRO ASP VAL PRO SEQRES 7 B 177 GLU ARG ILE ILE LEU ASN PRO VAL ILE THR PRO LEU THR SEQRES 8 B 177 LYS ASP THR SER GLY PHE TRP GLU GLY CYS LEU SER VAL SEQRES 9 B 177 PRO GLY MET ARG GLY TYR VAL GLU ARG PRO ASN GLN ILE SEQRES 10 B 177 ARG MET GLN TRP MET ASP GLU LYS GLY ASN GLN PHE ASP SEQRES 11 B 177 GLU THR ILE ASP GLY TYR LYS ALA ILE VAL TYR GLN HIS SEQRES 12 B 177 GLU CYS ASP HIS LEU GLN GLY ILE LEU TYR VAL ASP ARG SEQRES 13 B 177 LEU LYS ASP THR LYS LEU PHE GLY PHE ASN GLU THR LEU SEQRES 14 B 177 ASP SER SER HIS ASN VAL LEU ASP HET ZN A1513 1 HET ZN B2513 1 HET MES A1716 12 HET MES B2716 12 HET MES A3716 12 HET FMT A1800 3 HET FMT B2800 3 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM FMT FORMIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 5 MES 3(C6 H13 N O4 S) FORMUL 8 FMT 2(C H2 O2) FORMUL 10 HOH *210(H2 O) HELIX 1 1 ASP A 10 LYS A 15 5 6 HELIX 2 2 ASP A 23 GLN A 26 5 4 HELIX 3 3 THR A 27 GLU A 45 1 19 HELIX 4 4 PRO A 52 GLY A 55 5 4 HELIX 5 5 GLY A 135 GLN A 149 1 15 HELIX 6 6 LEU A 152 LEU A 157 5 6 HELIX 7 7 ASN A 166 ASP A 170 1 5 HELIX 8 8 ASP B 10 LYS B 15 5 6 HELIX 9 9 ASP B 23 GLN B 26 5 4 HELIX 10 10 THR B 27 ARG B 42 1 16 HELIX 11 11 HIS B 43 GLU B 45 5 3 HELIX 12 12 PRO B 52 GLY B 55 5 4 HELIX 13 13 GLY B 135 GLN B 149 1 15 HELIX 14 14 LEU B 152 LEU B 157 5 6 HELIX 15 15 ASN B 166 ASP B 170 1 5 SHEET 1 A 5 GLY A 48 ALA A 50 0 SHEET 2 A 5 ILE A 60 VAL A 63 -1 O VAL A 62 N LEU A 49 SHEET 3 A 5 ARG A 80 PRO A 89 -1 O ILE A 82 N VAL A 61 SHEET 4 A 5 GLN A 116 MET A 122 -1 O ARG A 118 N THR A 88 SHEET 5 A 5 GLN A 128 ASP A 134 -1 O ILE A 133 N ILE A 117 SHEET 1 B 3 PHE A 97 CYS A 101 0 SHEET 2 B 3 VAL A 104 VAL A 111 -1 O VAL A 111 N PHE A 97 SHEET 3 B 3 PHE A 163 PHE A 165 -1 O GLY A 164 N ARG A 108 SHEET 1 C 5 GLY B 48 ALA B 50 0 SHEET 2 C 5 ILE B 60 VAL B 63 -1 O VAL B 62 N LEU B 49 SHEET 3 C 5 ARG B 80 PRO B 89 -1 O ILE B 82 N VAL B 61 SHEET 4 C 5 GLN B 116 MET B 122 -1 O ARG B 118 N THR B 88 SHEET 5 C 5 GLN B 128 ASP B 134 -1 O ILE B 133 N ILE B 117 SHEET 1 D 3 PHE B 97 GLU B 99 0 SHEET 2 D 3 MET B 107 VAL B 111 -1 O GLY B 109 N GLU B 99 SHEET 3 D 3 PHE B 163 PHE B 165 -1 O GLY B 164 N ARG B 108 LINK ZN ZN A1513 SG CYS A 101 1555 1555 2.76 LINK ZN ZN A1513 NE2 HIS A 143 1555 1555 2.28 LINK ZN ZN A1513 NE2 HIS A 147 1555 1555 2.07 LINK ZN ZN B2513 SG CYS B 101 1555 1555 2.57 LINK ZN ZN B2513 NE2 HIS B 143 1555 1555 2.13 LINK ZN ZN B2513 NE2 HIS B 147 1555 1555 2.15 LINK ZN ZN A1513 O1 FMT A1800 1555 1555 2.50 LINK ZN ZN B2513 O2 FMT B2800 1555 1555 2.46 SITE 1 AC1 5 GLN A 53 CYS A 101 HIS A 143 HIS A 147 SITE 2 AC1 5 FMT A1800 SITE 1 AC2 5 GLN B 53 CYS B 101 HIS B 143 HIS B 147 SITE 2 AC2 5 FMT B2800 SITE 1 AC3 15 GLY A 46 VAL A 47 GLY A 48 ARG A 70 SITE 2 AC3 15 TYR A 71 PHE A 97 GLY A 100 CYS A 101 SITE 3 AC3 15 LEU A 102 TYR A 136 ILE A 139 VAL A 140 SITE 4 AC3 15 HIS A 143 FMT A1800 HOH A3805 SITE 1 AC4 13 GLY B 46 VAL B 47 ARG B 70 TYR B 71 SITE 2 AC4 13 PHE B 97 GLU B 99 GLY B 100 CYS B 101 SITE 3 AC4 13 LEU B 102 TYR B 136 ILE B 139 HIS B 143 SITE 4 AC4 13 FMT B2800 SITE 1 AC5 10 PRO A 78 ARG A 80 LYS A 137 HOH A3778 SITE 2 AC5 10 HOH A3782 HOH A3790 HOH A3798 PHE B 38 SITE 3 AC5 10 ARG B 42 GLU B 79 SITE 1 AC6 7 GLY A 48 LEU A 49 GLN A 53 LEU A 102 SITE 2 AC6 7 GLU A 144 ZN A1513 MES A1716 SITE 1 AC7 8 GLY B 48 GLN B 53 LEU B 102 HIS B 143 SITE 2 AC7 8 GLU B 144 HIS B 147 ZN B2513 MES B2716 CRYST1 82.192 82.192 201.040 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012167 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004974 0.00000 MASTER 367 0 7 15 16 0 19 6 0 0 0 28 END