HEADER TRANSCRIPTION 27-NOV-03 1V64 TITLE SOLUTION STRUCTURE OF THE 3RD HMG BOX OF MOUSE UBF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLAR TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG BOX DOMAIN; COMPND 5 SYNONYM: UPSTREAM BINDING FACTOR 1, UBF-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1300010N03; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030107-50; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TRANSCRIPTION FACTOR, DNA BINDING, STRUCTURAL GENOMICS, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 1V64 1 VERSN REVDAT 1 27-MAY-04 1V64 0 JRNL AUTH K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 3RD HMG BOX OF MOUSE UBF1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V64 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB006253. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM HMG BOX DOMAIN, 20MM D- REMARK 210 TRIS-HCL, 100MM NACL, 1MM D- REMARK 210 DTT, 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5, CNS 1.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 32.39 -99.29 REMARK 500 1 PHE A 13 45.09 -94.61 REMARK 500 1 ASP A 14 -48.59 -147.62 REMARK 500 1 PRO A 17 -174.35 -66.73 REMARK 500 1 ASP A 38 43.02 -94.95 REMARK 500 1 ASN A 101 41.75 -96.30 REMARK 500 1 ILE A 102 72.75 63.27 REMARK 500 2 SER A 3 90.14 -173.04 REMARK 500 2 PHE A 13 30.34 -97.12 REMARK 500 2 ASP A 14 -57.67 -130.84 REMARK 500 2 PRO A 17 -175.96 -68.57 REMARK 500 2 THR A 18 107.95 -58.92 REMARK 500 2 ASP A 38 45.40 -94.41 REMARK 500 2 ILE A 102 104.78 64.52 REMARK 500 2 PRO A 105 -169.54 -69.82 REMARK 500 3 SER A 3 -46.28 -165.30 REMARK 500 3 GLN A 8 -46.17 -133.46 REMARK 500 3 PRO A 17 -167.67 -69.10 REMARK 500 3 ASP A 38 43.39 -94.55 REMARK 500 3 ASN A 101 30.01 -99.20 REMARK 500 3 ILE A 102 41.54 -106.97 REMARK 500 3 PRO A 105 -167.98 -69.90 REMARK 500 4 SER A 3 -47.23 -139.54 REMARK 500 4 SER A 6 -44.37 -168.73 REMARK 500 4 LYS A 12 35.36 -98.87 REMARK 500 4 PHE A 13 39.51 -177.03 REMARK 500 4 ASP A 14 -59.37 -127.58 REMARK 500 4 PRO A 17 -178.41 -64.82 REMARK 500 4 THR A 18 103.76 -58.12 REMARK 500 4 ASP A 38 44.17 -94.95 REMARK 500 4 SER A 103 94.67 -179.45 REMARK 500 4 SER A 106 81.87 60.46 REMARK 500 4 SER A 107 103.50 60.85 REMARK 500 5 SER A 3 104.57 -164.71 REMARK 500 5 SER A 6 -46.85 -150.90 REMARK 500 5 PHE A 13 31.58 -162.97 REMARK 500 5 PRO A 17 -167.64 -68.13 REMARK 500 5 THR A 18 105.09 -59.79 REMARK 500 5 ASP A 38 35.90 -96.37 REMARK 500 5 LEU A 100 54.08 -106.65 REMARK 500 5 ASN A 101 33.59 -98.18 REMARK 500 5 SER A 103 34.25 -98.26 REMARK 500 5 SER A 107 102.45 60.33 REMARK 500 6 SER A 5 -46.32 -164.47 REMARK 500 6 SER A 6 -47.33 -146.15 REMARK 500 6 LYS A 12 30.49 -98.05 REMARK 500 6 PHE A 13 30.42 -155.89 REMARK 500 6 ASP A 14 -53.38 -157.90 REMARK 500 6 PRO A 17 -169.23 -68.96 REMARK 500 6 ASP A 38 42.38 -94.85 REMARK 500 6 ASN A 101 42.67 -101.89 REMARK 500 7 SER A 2 175.60 58.59 REMARK 500 7 PHE A 13 64.52 -102.63 REMARK 500 7 PRO A 17 -167.06 -68.15 REMARK 500 7 ASP A 38 43.14 -95.04 REMARK 500 7 SER A 107 122.66 -173.91 REMARK 500 8 SER A 6 62.74 60.29 REMARK 500 8 LYS A 12 30.42 -98.61 REMARK 500 8 PHE A 13 32.44 -167.31 REMARK 500 8 ASP A 14 -68.83 -141.17 REMARK 500 8 PRO A 17 -168.43 -68.09 REMARK 500 8 ASP A 38 42.62 -95.33 REMARK 500 8 GLU A 97 -60.73 -95.49 REMARK 500 8 ASN A 101 30.65 -98.50 REMARK 500 8 SER A 107 34.93 -98.39 REMARK 500 9 SER A 6 -70.41 -93.49 REMARK 500 9 PHE A 13 30.91 -146.69 REMARK 500 9 PRO A 17 -172.70 -68.14 REMARK 500 9 THR A 18 107.25 -59.26 REMARK 500 9 ASP A 38 43.12 -94.64 REMARK 500 9 SER A 103 158.95 60.23 REMARK 500 9 SER A 107 34.74 -148.36 REMARK 500 10 SER A 6 77.18 -166.10 REMARK 500 10 ASP A 14 -72.02 -140.79 REMARK 500 10 PRO A 17 -172.75 -67.92 REMARK 500 10 THR A 18 104.79 -59.28 REMARK 500 10 ASP A 38 43.30 -94.93 REMARK 500 11 SER A 2 -70.44 -91.86 REMARK 500 11 PHE A 13 35.25 -97.83 REMARK 500 11 ASP A 14 -65.08 -141.44 REMARK 500 11 PRO A 17 -166.72 -65.73 REMARK 500 11 THR A 18 99.09 -58.18 REMARK 500 11 ASP A 38 43.73 -94.10 REMARK 500 11 GLU A 97 -60.99 -96.37 REMARK 500 11 ILE A 102 -46.12 -145.04 REMARK 500 11 SER A 107 81.72 -66.61 REMARK 500 12 SER A 2 -67.07 -141.50 REMARK 500 12 SER A 5 158.40 60.44 REMARK 500 12 SER A 6 -46.94 -134.63 REMARK 500 12 ASP A 38 44.13 -94.71 REMARK 500 12 LEU A 100 61.25 -112.07 REMARK 500 12 ASN A 101 37.09 -99.67 REMARK 500 13 ASP A 14 -68.03 -147.87 REMARK 500 13 ASP A 38 42.72 -94.75 REMARK 500 14 PHE A 13 38.80 -97.77 REMARK 500 14 PRO A 17 -179.28 -67.62 REMARK 500 14 ASP A 38 44.66 -95.10 REMARK 500 14 SER A 106 168.56 60.11 REMARK 500 15 SER A 2 -68.96 68.57 REMARK 500 15 PHE A 13 41.10 -105.67 REMARK 500 15 ASP A 14 -46.82 -146.60 REMARK 500 15 PRO A 17 -168.20 -68.82 REMARK 500 15 PRO A 21 171.33 -58.08 REMARK 500 15 ASP A 38 44.68 -94.46 REMARK 500 16 SER A 6 -74.51 -81.24 REMARK 500 16 LYS A 12 31.55 -98.43 REMARK 500 16 PHE A 13 31.29 -148.41 REMARK 500 16 PRO A 17 -168.04 -73.45 REMARK 500 16 PRO A 21 171.08 -58.91 REMARK 500 16 ASP A 38 44.20 -93.99 REMARK 500 16 SER A 107 -42.16 -174.35 REMARK 500 17 SER A 2 -53.56 -136.24 REMARK 500 17 SER A 5 177.21 60.70 REMARK 500 17 ASP A 14 -62.33 -157.45 REMARK 500 17 PRO A 17 -167.66 -69.39 REMARK 500 17 ASP A 38 43.42 -94.80 REMARK 500 17 SER A 103 94.06 -68.82 REMARK 500 17 SER A 107 161.90 60.08 REMARK 500 18 SER A 3 -49.27 -136.01 REMARK 500 18 PRO A 17 -167.40 -68.42 REMARK 500 18 PRO A 21 172.30 -58.87 REMARK 500 18 ASP A 38 41.77 -95.21 REMARK 500 18 SER A 103 -43.14 -168.08 REMARK 500 19 SER A 3 -70.51 67.95 REMARK 500 19 PHE A 13 32.17 -98.48 REMARK 500 19 ASP A 14 -46.81 -148.69 REMARK 500 19 PRO A 17 -174.19 -69.82 REMARK 500 19 ASP A 38 42.81 -96.24 REMARK 500 19 LEU A 100 73.92 -103.45 REMARK 500 19 SER A 106 62.64 64.76 REMARK 500 19 SER A 107 -51.28 -149.29 REMARK 500 20 SER A 5 31.64 -144.05 REMARK 500 20 PHE A 13 46.37 -108.70 REMARK 500 20 PRO A 17 -167.84 -67.38 REMARK 500 20 ASP A 38 45.07 -94.78 REMARK 500 20 ILE A 102 89.70 61.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011339.1 RELATED DB: TARGETDB DBREF 1V64 A 8 102 UNP P25976 UBF1_MOUSE 288 382 SEQADV 1V64 GLY A 1 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 2 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 3 UNP P25976 CLONING ARTIFACT SEQADV 1V64 GLY A 4 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 5 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 6 UNP P25976 CLONING ARTIFACT SEQADV 1V64 GLY A 7 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 103 UNP P25976 CLONING ARTIFACT SEQADV 1V64 GLY A 104 UNP P25976 CLONING ARTIFACT SEQADV 1V64 PRO A 105 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 106 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 107 UNP P25976 CLONING ARTIFACT SEQADV 1V64 GLY A 108 UNP P25976 CLONING ARTIFACT SEQRES 1 A 108 GLY SER SER GLY SER SER GLY GLN LEU LYS ASP LYS PHE SEQRES 2 A 108 ASP GLY ARG PRO THR LYS PRO PRO PRO ASN SER TYR SER SEQRES 3 A 108 LEU TYR CYS ALA GLU LEU MET ALA ASN MET LYS ASP VAL SEQRES 4 A 108 PRO SER THR GLU ARG MET VAL LEU CYS SER GLN GLN TRP SEQRES 5 A 108 LYS LEU LEU SER GLN LYS GLU LYS ASP ALA TYR HIS LYS SEQRES 6 A 108 LYS CYS ASP GLN LYS LYS LYS ASP TYR GLU VAL GLU LEU SEQRES 7 A 108 LEU ARG PHE LEU GLU SER LEU PRO GLU GLU GLU GLN GLN SEQRES 8 A 108 ARG VAL LEU GLY GLU GLU LYS MET LEU ASN ILE SER GLY SEQRES 9 A 108 PRO SER SER GLY HELIX 1 1 SER A 24 MET A 36 1 13 HELIX 2 2 SER A 41 LEU A 55 1 15 HELIX 3 3 GLN A 57 LEU A 85 1 29 HELIX 4 4 GLU A 87 GLY A 95 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 209 0 0 4 0 0 0 6 0 0 0 9 END