HEADER RECEPTOR 24-FEB-04 1UXF TITLE HOMOLOGY MODEL OF HEMOGLOBIN BINDING PROTEIN HGBA FROM TITLE 2 ACTINOBACILLUS PLEUROPNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HGBA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOBACILLUS PLEUROPNEUMONIAE KEYWDS HOMOLOGY MODELLING, HEMOGLOBIN RECEPTOR, OUTER MEMBRANE KEYWDS 2 PROTEINS, BETA-BARREL, TONB EXPDTA THEORETICAL MODEL AUTHOR P.D.PAWELEK,J.W.COULTON REVDAT 2 10-NOV-04 1UXF 1 JRNL REVDAT 1 19-MAR-04 1UXF 0 JRNL AUTH P.D.PAWELEK,J.W.COULTON JRNL TITL HEMOGLOBIN-BINDING PROTEIN HGBA IN THE OUTER JRNL TITL 2 MEMBRANE OF ACTINOBACILLUS PLEUROPNEUMONIAE: JRNL TITL 3 HOMOLOGY MODELLING REVEALS REGIONS OF POTENTIAL JRNL TITL 4 INTERACTIONS WITH HEMOGLOBIN AND HEME JRNL REF J.MOL.GRAPH.MODEL. V. 23 211 2004 JRNL REFN ASTM JMGMFI US ISSN 1093-3263 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MODEL REFINED BY MOLECULAR DYNAMICS REMARK 3 ROUTINES WITHIN MODELLER REMARK 4 REMARK 4 1UXF COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 25-FEB-2004. REMARK 100 THE EBI ID CODE IS EBI-14556. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 89 N - CA - C ANGL. DEV. =-22.3 DEGREES REMARK 500 PHE A 89 C - N - CA ANGL. DEV. = 19.2 DEGREES REMARK 500 ASN A 864 CB - CG - OD1 ANGL. DEV. =-76.6 DEGREES REMARK 500 ASN A 864 CB - CG - ND2 ANGL. DEV. =-22.8 DEGREES REMARK 700 REMARK 700 SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS " REMARK 700 AC" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 22- REMARK 700 STRANDED BARREL THIS IS REPRESENTED BY A 23-STRANDED SHEET REMARK 700 IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. REMARK 999 REMARK 999 SEQUENCE REMARK 999 PREDICTED EXTRACELLULAR LOOP REGIONS NOT MODELED. THESE REMARK 999 INCLUDE GLU 193 TO ILE 217, ASN 247 TO GLU 268, ARG 309 REMARK 999 TO ILE 441, GLY 488 TO LEU 543, VAL 583 TO SER 623, SER 660 REMARK 999 TO VAL 678, PHE 713 TO ARG 745, TYR 832 TO LYS 844 AND REMARK 999 LEU 880 TO GLY 904. RESIDUES NUMBERED ACCORDING TO MATURE REMARK 999 PROTEIN SEQUENCE. DBREF 1UXF A 7 192 UNP Q84I43 Q84I43 32 217 DBREF 1UXF A 218 246 UNP Q84I43 Q84I43 243 271 DBREF 1UXF A 269 308 UNP Q84I43 Q84I43 294 333 DBREF 1UXF A 442 487 UNP Q84I43 Q84I43 467 512 DBREF 1UXF A 544 582 UNP Q84I43 Q84I43 569 607 DBREF 1UXF A 624 659 UNP Q84I43 Q84I43 649 684 DBREF 1UXF A 679 712 UNP Q84I43 Q84I43 704 737 DBREF 1UXF A 746 831 UNP Q84I43 Q84I43 771 856 DBREF 1UXF A 845 879 UNP Q84I43 Q84I43 870 904 DBREF 1UXF A 905 923 UNP Q84I43 Q84I43 930 948 SEQRES 1 A 550 ASP THR VAL ILE VAL LYS ASP GLY ILE GLN GLN GLN LYS SEQRES 2 A 550 ILE SER GLU ILE LYS LYS SER ALA LYS GLN LEU ALA LYS SEQRES 3 A 550 GLN GLN VAL GLN ASP SER ARG ASP LEU VAL ARG TYR GLU SEQRES 4 A 550 THR GLY VAL THR VAL VAL GLU THR GLY ARG MET GLY SER SEQRES 5 A 550 SER GLY TYR ALA VAL ARG GLY VAL ASP GLU ASN ARG VAL SEQRES 6 A 550 ALA ILE THR VAL ASP GLY LEU HIS GLN ALA GLU THR LEU SEQRES 7 A 550 SER SER GLN GLY PHE LYS GLU LEU PHE GLU GLY TYR GLY SEQRES 8 A 550 ASN PHE ASN ASN THR ARG ASN SER VAL GLU ILE GLU THR SEQRES 9 A 550 LEU LYS GLN ALA THR ILE ARG LYS GLY ALA ASP SER VAL SEQRES 10 A 550 ARG VAL GLY SER GLY ALA LEU GLY GLY ALA VAL MET PHE SEQRES 11 A 550 GLU THR LYS ASP ALA ARG ASP PHE LEU THR GLU LYS ASP SEQRES 12 A 550 TYR HIS PHE GLY TYR LYS THR GLY TYR SER SER ALA ASP SEQRES 13 A 550 ASN GLN LYS ALA ASN SER LEU THR PHE ALA GLY ARG TYR SEQRES 14 A 550 LYS ASN PHE ASP ILE LEU ALA LEU LYS THR TRP ARG ASP SEQRES 15 A 550 GLY HIS GLU LEU LYS LYS ASP SER THR LEU ILE LYS PHE SEQRES 16 A 550 GLY TYR SER PRO SER ASP ASN HIS ARG PHE SER VAL VAL SEQRES 17 A 550 ALA ASP LEU TYR GLU LYS LYS LEU ARG HIS THR ASN ASP SEQRES 18 A 550 LYS SER LYS ARG GLN ASN TYR ALA PHE VAL TYR GLU ASN SEQRES 19 A 550 PHE SER ALA ASN PRO LEU TRP ASP THR LEU LYS LEU THR SEQRES 20 A 550 TYR SER THR GLN LYS ILE LYS ASN TYR THR GLU ARG ASP SEQRES 21 A 550 LEU ASP THR ASP THR LYS GLN LEU ASN LEU ASP LEU THR SEQRES 22 A 550 LYS SER PHE SER LEU LEU GLY GLN GLU HIS SER LEU GLU SEQRES 23 A 550 TYR GLY GLY SER TYR SER ARG THR GLU LYS LYS MET VAL SEQRES 24 A 550 ASN ARG ILE PRO VAL GLU ALA LYS ASN GLY SER LEU TYR SEQRES 25 A 550 PHE ALA ASP ASN LEU LYS ALA ASN ASP TYR LEU SER PHE SEQRES 26 A 550 ASP ILE GLY TYR ARG TYR ASP ASP ILE SER TYR LYS PRO SEQRES 27 A 550 LYS TYR ARG ASN VAL LYS TYR GLN LYS HIS SER TYR SER SEQRES 28 A 550 LEU ALA ALA THR ALA ASP PRO PHE SER PHE LEU ARG VAL SEQRES 29 A 550 GLN VAL LYS TYR ALA ASN GLY PHE ARG ALA PRO THR ASP SEQRES 30 A 550 LEU LYS SER GLU ARG ALA GLU THR LYS GLU ALA ALA LEU SEQRES 31 A 550 THR LEU HIS GLY ASP LEU GLY PHE ILE THR THR SER TYR SEQRES 32 A 550 PHE LYS THR ASP TYR ASP ASN GLN GLU ALA ARG VAL ASN SEQRES 33 A 550 GLY LEU GLU ILE SER SER LYS LEU ASN PHE GLY GLN LEU SEQRES 34 A 550 TRP GLN ALA LEU GLU GLY PHE ASN ALA SER TYR LYS TYR SEQRES 35 A 550 THR TYR GLN LYS GLY LYS MET GLU GLY ASN LEU PRO LEU SEQRES 36 A 550 ASN ALA ILE GLN PRO ARG THR SER VAL PHE GLY LEU GLY SEQRES 37 A 550 TYR ALA HIS PRO GLU ASP LYS PHE GLY VAL ASP VAL TYR SEQRES 38 A 550 VAL THR ARG VAL SER ALA LYS LYS ALA GLU ASP THR TYR SEQRES 39 A 550 ASN MET TRP ARG SER ASP ALA TYR THR LEU LEU ASP MET SEQRES 40 A 550 ILE ALA TYR VAL LYS PRO TRP LYS ASN VAL THR LEU GLN SEQRES 41 A 550 ALA GLY VAL TYR ASN LEU GLN ASN ARG LYS TYR LEU ASN SEQRES 42 A 550 ARG PHE THR ALA PRO GLY ARG ASN PHE LYS LEU THR ALA SEQRES 43 A 550 GLU VAL THR PHE HELIX 1 1 ILE A 15 GLN A 18 5 4 HELIX 2 2 LYS A 25 ALA A 31 1 7 HELIX 3 3 GLN A 36 TYR A 44 1 9 HELIX 4 4 ALA A 120 GLY A 126 1 7 SHEET 1 AA 5 ILE A 20 LYS A 24 0 SHEET 2 AA 5 THR A 110 ARG A 117 -1 O GLN A 113 N ILE A 23 SHEET 3 AA 5 GLY A 132 THR A 138 -1 O ALA A 133 N ILE A 116 SHEET 4 AA 5 ALA A 72 VAL A 75 1 O ALA A 72 N VAL A 134 SHEET 5 AA 5 LEU A 78 HIS A 79 -1 O LEU A 78 N VAL A 75 SHEET 1 AB 2 VAL A 48 THR A 49 0 SHEET 2 AB 2 ALA A 62 VAL A 63 -1 O ALA A 62 N THR A 49 SHEET 1 AC62 LYS A 148 GLY A 157 0 SHEET 2 AC62 ASP A 162 ALA A 172 -1 O GLN A 164 N LYS A 155 SHEET 3 AC62 ASP A 179 HIS A 190 -1 O ILE A 180 N PHE A 171 SHEET 4 AC62 LYS A 218 SER A 229 -1 O LYS A 219 N ARG A 187 SHEET 5 AC62 ARG A 235 LYS A 246 -1 O VAL A 238 N PHE A 226 SHEET 6 AC62 THR A 272 PHE A 288 -1 O SER A 276 N LYS A 245 SHEET 7 AC62 TRP A 294 ASN A 308 -1 O ASP A 295 N ASN A 287 SHEET 8 AC62 THR A 443 PHE A 462 -1 O ARG A 445 N ILE A 306 SHEET 9 AC62 LEU A 465 MET A 484 -1 O LEU A 465 N PHE A 462 SHEET 10 AC62 ILE A 544 ALA A 561 -1 O VAL A 546 N THR A 480 SHEET 11 AC62 LEU A 565 LYS A 581 -1 O PHE A 567 N LEU A 559 SHEET 12 AC62 ARG A 624 ASP A 640 -1 O VAL A 626 N TYR A 578 SHEET 13 AC62 ARG A 646 ALA A 657 -1 O ARG A 646 N THR A 693 SHEET 14 AC62 SER A 682 GLY A 696 -1 O GLU A 683 N ARG A 656 SHEET 15 AC62 GLY A 699 ASN A 712 -1 O ILE A 701 N LEU A 694 SHEET 16 AC62 GLN A 746 ASN A 760 -1 O ALA A 748 N TYR A 710 SHEET 17 AC62 GLU A 769 LYS A 781 -1 O PHE A 771 N LEU A 759 SHEET 18 AC62 PRO A 795 PRO A 807 -1 O PRO A 795 N THR A 778 SHEET 19 AC62 ASP A 162 ALA A 172 0 SHEET 20 AC62 LYS A 148 GLY A 157 -1 O ASP A 149 N THR A 170 SHEET 21 AC62 ASP A 179 HIS A 190 0 SHEET 22 AC62 ASP A 162 ALA A 172 -1 O ASN A 163 N ASP A 188 SHEET 23 AC62 LYS A 218 SER A 229 0 SHEET 24 AC62 ASP A 179 HIS A 190 -1 O ASP A 179 N GLY A 227 SHEET 25 AC62 ARG A 235 LYS A 246 0 SHEET 26 AC62 LYS A 218 SER A 229 -1 O ASP A 220 N GLU A 244 SHEET 27 AC62 THR A 272 ASN A 308 0 SHEET 28 AC62 ARG A 235 LYS A 246 -1 O ARG A 235 N GLU A 286 SHEET 29 AC62 TRP A 294 ASN A 308 0 SHEET 30 AC62 THR A 272 PHE A 288 -1 O LYS A 275 N LYS A 307 SHEET 31 AC62 THR A 443 PHE A 462 0 SHEET 32 AC62 TRP A 294 ASN A 308 -1 O TRP A 294 N ASP A 457 SHEET 33 AC62 LEU A 465 MET A 484 0 SHEET 34 AC62 THR A 443 PHE A 462 -1 O GLU A 444 N LYS A 483 SHEET 35 AC62 ILE A 544 ALA A 561 0 SHEET 36 AC62 LEU A 465 MET A 484 -1 O GLY A 466 N LYS A 560 SHEET 37 AC62 LEU A 565 LYS A 581 0 SHEET 38 AC62 ILE A 544 ALA A 561 -1 O GLU A 547 N LYS A 579 SHEET 39 AC62 ARG A 624 ASP A 640 0 SHEET 40 AC62 LEU A 565 LYS A 581 -1 O SER A 566 N THR A 638 SHEET 41 AC62 ARG A 646 ALA A 657 0 SHEET 42 AC62 ARG A 624 ASP A 640 -1 O TYR A 633 N ASN A 653 SHEET 43 AC62 SER A 682 GLY A 696 0 SHEET 44 AC62 ARG A 646 ALA A 657 -1 O ARG A 646 N THR A 693 SHEET 45 AC62 GLY A 699 ASN A 712 0 SHEET 46 AC62 SER A 682 GLY A 696 -1 O ARG A 684 N ASP A 711 SHEET 47 AC62 GLN A 746 ASN A 760 0 SHEET 48 AC62 GLY A 699 ASN A 712 -1 O PHE A 700 N LYS A 758 SHEET 49 AC62 GLU A 769 LYS A 781 0 SHEET 50 AC62 GLN A 746 ASN A 760 -1 O GLU A 747 N LYS A 783 SHEET 51 AC62 ASN A 787 PRO A 789 0 SHEET 52 AC62 GLU A 769 LYS A 781 -1 N GLY A 782 O LEU A 788 SHEET 53 AC62 PRO A 795 PRO A 807 -1 O THR A 797 N LYS A 776 SHEET 54 AC62 ARG A 846 LYS A 860 0 SHEET 55 AC62 LYS A 810 LYS A 824 -1 O GLY A 812 N TYR A 858 SHEET 56 AC62 VAL A 865 ASN A 873 0 SHEET 57 AC62 ARG A 846 LYS A 860 -1 O MET A 855 N VAL A 871 SHEET 58 AC62 ASN A 914 PHE A 923 0 SHEET 59 AC62 ASP A 149 GLY A 157 -1 O TYR A 150 N PHE A 923 SHEET 1 AD 2 LYS A 823 LYS A 824 0 SHEET 2 AD 2 ARG A 846 SER A 847 -1 O SER A 847 N LYS A 823 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 -0.000001 -0.000001 0.00000 SCALE2 0.000000 1.000000 -0.000001 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 57 0 0 4 68 0 0 6 0 0 0 43 END